Wall clock time and date at job start Tue Mar 31 2020 23:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.05448 * 2 1 4 4 C 1.54265 * 110.03174 * 238.58410 * 2 1 3 5 5 C 1.54896 * 104.19438 * 264.32114 * 4 2 1 6 6 C 1.54888 * 102.74663 * 322.05731 * 5 4 2 7 7 C 1.53876 * 110.03607 * 121.41434 * 2 1 3 8 8 O 1.42898 * 110.06928 * 359.97438 * 7 2 1 9 9 C 1.52998 * 110.03511 * 238.57073 * 7 2 1 10 10 N 1.46498 * 109.47472 * 186.37563 * 9 7 2 11 11 S 1.65598 * 120.00015 * 164.67417 * 10 9 7 12 12 O 1.42097 * 106.40158 * 307.67688 * 11 10 9 13 13 O 1.42103 * 106.40176 * 174.75816 * 11 10 9 14 14 C 1.76198 * 107.21841 * 61.22004 * 11 10 9 15 15 C 1.37633 * 120.12681 * 244.76312 * 14 11 10 16 16 C 1.38623 * 120.24944 * 179.97438 * 15 14 11 17 17 C 1.38654 * 120.49746 * 0.02562 * 16 15 14 18 18 C 1.37604 * 120.25074 * 359.97438 * 17 16 15 19 19 C 1.40698 * 120.12613 * 64.48683 * 14 11 10 20 20 C 1.41393 * 120.24615 * 359.97438 * 19 14 11 21 21 H 1.08002 * 120.00478 * 331.71903 * 20 19 14 22 22 C 1.39953 * 119.99863 * 151.71461 * 20 19 14 23 23 N 1.30819 * 119.99954 * 347.92156 * 22 20 19 24 24 Si 1.86801 * 119.99625 * 167.92161 * 22 20 19 25 25 H 1.48500 * 109.46698 * 90.00447 * 24 22 20 26 26 H 1.48494 * 109.46862 * 209.99868 * 24 22 20 27 27 H 1.48499 * 109.47377 * 330.00123 * 24 22 20 28 28 H 1.09008 * 109.47130 * 298.58100 * 1 2 3 29 29 H 1.09003 * 109.47764 * 58.58422 * 1 2 3 30 30 H 1.09008 * 109.47058 * 178.58597 * 1 2 3 31 31 H 1.09003 * 110.48523 * 145.64293 * 4 2 1 32 32 H 1.08996 * 110.48775 * 23.00390 * 4 2 1 33 33 H 1.09001 * 110.75340 * 203.74221 * 5 4 2 34 34 H 1.08997 * 110.75401 * 80.37300 * 5 4 2 35 35 H 1.08995 * 110.48669 * 279.26355 * 6 5 4 36 36 H 1.09005 * 110.48294 * 156.61709 * 6 5 4 37 37 H 0.96698 * 114.00123 * 179.28250 * 8 7 2 38 38 H 1.09005 * 109.47108 * 66.37697 * 9 7 2 39 39 H 1.09002 * 109.46866 * 306.38448 * 9 7 2 40 40 H 0.96997 * 119.99668 * 344.68181 * 10 9 7 41 41 H 1.07994 * 119.88075 * 359.97438 * 15 14 11 42 42 H 1.07994 * 119.74959 * 179.97438 * 16 15 14 43 43 H 1.07997 * 119.87697 * 179.97438 * 17 16 15 44 44 H 1.08004 * 120.12462 * 180.02562 * 18 17 16 45 45 H 0.97000 * 119.99697 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9037 1.0240 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 2.3281 -2.1902 -0.7191 6 6 2.8875 -1.9405 0.7035 7 6 2.0571 -0.7535 1.2337 8 8 0.9642 -1.2328 2.0197 9 6 2.9409 0.1704 2.0741 10 7 3.5574 -0.5972 3.1589 11 16 4.8429 0.0320 3.9918 12 8 5.8018 0.4190 3.0172 13 8 5.1273 -0.8825 5.0417 14 6 4.2890 1.5169 4.7619 15 6 4.8243 2.7291 4.3902 16 6 4.3900 3.8989 4.9940 17 6 3.4137 3.8625 5.9778 18 6 2.8644 2.6618 6.3653 19 6 3.2935 1.4684 5.7550 20 6 2.7318 0.2295 6.1405 21 1 2.6884 -0.5868 5.4347 22 6 2.2319 0.0609 7.4368 23 7 2.4912 0.9519 8.3589 24 14 1.1943 -1.4364 7.8502 25 1 2.0766 -2.5370 8.3146 26 1 0.2296 -1.0888 8.9243 27 1 0.4521 -1.8737 6.6407 28 1 -0.3634 0.4917 0.9025 29 1 -0.3635 0.5357 -0.8770 30 1 -0.3633 -1.0274 -0.0254 31 1 2.9810 -0.3000 -1.5967 32 1 1.3061 -0.7696 -2.0255 33 1 3.0676 -2.6931 -1.3423 34 1 1.4032 -2.7652 -0.6751 35 1 3.9440 -1.6765 0.6571 36 1 2.7402 -2.8196 1.3310 37 1 1.2323 -1.7264 2.8067 38 1 2.3325 0.9707 2.4956 39 1 3.7201 0.5997 1.4442 40 1 3.2127 -1.4742 3.3892 41 1 5.5856 2.7692 3.6252 42 1 4.8159 4.8457 4.6964 43 1 3.0831 4.7799 6.4419 44 1 2.1038 2.6358 7.1315 45 1 2.1444 0.8352 9.2572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601421102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:43 Heat of formation + Delta-G solvation = -146.564305 kcal Electronic energy + Delta-G solvation = -28977.943054 eV Core-core repulsion = 25085.137883 eV Total energy + Delta-G solvation = -3892.805171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.69771 -39.37857 -38.04002 -36.68017 -36.23534 -35.68924 -35.22439 -32.04585 -31.91750 -31.36133 -29.52905 -27.36433 -26.84151 -24.42826 -23.45553 -22.94117 -21.73998 -20.65362 -20.02773 -19.51054 -18.66965 -18.16552 -17.31568 -17.14797 -16.96944 -16.37805 -16.23567 -16.02843 -15.49613 -15.06931 -15.02033 -14.82918 -14.47087 -14.33531 -13.86688 -13.69674 -13.47461 -13.30089 -13.25460 -13.11259 -12.98884 -12.95728 -12.90190 -12.82988 -12.77631 -12.49209 -12.14558 -12.11450 -11.82446 -11.66019 -11.46525 -11.41352 -11.26746 -11.18707 -11.16589 -10.79926 -10.27418 -9.84478 -9.43812 -8.79496 -6.61096 -0.18694 0.52963 0.97380 1.37520 1.49150 1.53811 2.15606 2.30689 2.63448 2.96524 3.26630 3.47297 3.54575 3.67725 3.75066 3.91725 4.26091 4.32017 4.39291 4.43704 4.46216 4.49247 4.49944 4.67502 4.71530 4.73289 4.85873 4.92741 5.00254 5.02963 5.10052 5.12284 5.14568 5.22276 5.29916 5.30716 5.39809 5.47191 5.51768 5.62325 5.70148 5.81875 6.00264 6.07390 6.13616 6.47260 6.67275 6.83288 6.83756 8.16425 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011023 B = 0.004953 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.551016 B = 5651.899138 C = 6501.665530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.089 4.089 3 H 0.081 0.919 4 C -0.118 4.118 5 C -0.116 4.116 6 C -0.154 4.154 7 C 0.134 3.866 8 O -0.556 6.556 9 C 0.099 3.901 10 N -1.106 6.106 11 S 2.723 3.277 12 O -1.008 7.008 13 O -0.998 6.998 14 C -0.794 4.794 15 C -0.017 4.017 16 C -0.251 4.251 17 C -0.077 4.077 18 C -0.187 4.187 19 C 0.162 3.838 20 C -0.471 4.471 21 H 0.097 0.903 22 C 0.038 3.962 23 N -0.808 5.808 24 Si 0.975 3.025 25 H -0.267 1.267 26 H -0.263 1.263 27 H -0.238 1.238 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.380 0.620 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.418 0.582 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.114 0.886 45 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.226 -4.282 -13.536 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.108 4.108 3 H 0.099 0.901 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.191 4.191 7 C 0.091 3.909 8 O -0.363 6.363 9 C -0.027 4.027 10 N -0.867 5.867 11 S 2.820 3.180 12 O -0.998 6.998 13 O -0.988 6.988 14 C -0.888 4.888 15 C -0.037 4.037 16 C -0.272 4.272 17 C -0.096 4.096 18 C -0.207 4.207 19 C 0.158 3.842 20 C -0.499 4.499 21 H 0.115 0.885 22 C -0.180 4.180 23 N -0.432 5.432 24 Si 0.794 3.206 25 H -0.192 1.192 26 H -0.188 1.188 27 H -0.161 1.161 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.229 0.771 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.254 0.746 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.139 0.861 44 H 0.131 0.869 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.683 -4.133 -13.774 15.124 hybrid contribution -0.399 -0.231 1.685 1.746 sum -5.082 -4.364 -12.089 13.821 Atomic orbital electron populations 1.21455 0.93694 1.01870 1.00924 1.21835 0.97405 0.99195 0.92365 0.90069 1.22471 1.01551 0.95099 0.96377 1.22428 1.01052 0.97037 0.94857 1.23099 0.99878 0.97807 0.98351 1.22026 0.85541 0.92840 0.90471 1.86566 1.33376 1.75420 1.40955 1.22090 0.97375 0.94823 0.88424 1.55192 1.53604 1.29757 1.48132 1.00277 0.72494 0.73371 0.71898 1.93424 1.59694 1.84752 1.61941 1.93495 1.84035 1.64234 1.57085 1.30151 1.18473 1.17034 1.23098 1.20583 0.95285 0.91930 0.95895 1.20882 1.04929 0.97639 1.03701 1.21248 0.95459 0.97352 0.95513 1.21586 1.03450 0.92355 1.03277 1.17313 0.85916 0.93966 0.87043 1.20152 1.33486 0.97814 0.98450 0.88506 1.26850 0.94852 1.00976 0.95369 1.69826 1.34215 1.35245 1.03959 0.85287 0.78105 0.77117 0.80062 1.19157 1.18752 1.16100 0.93887 0.91904 0.92618 0.90773 0.89930 0.90400 0.91227 0.90847 0.90404 0.77114 0.92081 0.89737 0.74641 0.85988 0.85567 0.86116 0.86853 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 8.08 71.98 0.58 -1.95 16 2 C -0.09 -1.84 3.16 -10.07 -0.03 -1.88 16 3 H 0.08 1.67 7.67 -2.38 -0.02 1.66 16 4 C -0.12 -1.95 6.37 31.67 0.20 -1.75 16 5 C -0.12 -1.97 6.91 31.89 0.22 -1.75 16 6 C -0.15 -3.16 5.46 31.67 0.17 -2.99 16 7 C 0.13 3.14 1.02 -10.07 -0.01 3.13 16 8 O -0.56 -13.84 11.13 -148.98 -1.66 -15.50 16 9 C 0.10 2.87 4.97 86.38 0.43 3.30 16 10 N -1.11 -35.74 4.55 -187.49 -0.85 -36.59 16 11 S 2.72 115.63 4.94 -56.49 -0.28 115.35 16 12 O -1.01 -44.21 16.57 -128.00 -2.12 -46.33 16 13 O -1.00 -48.95 16.61 -128.00 -2.13 -51.08 16 14 C -0.79 -37.61 5.86 22.73 0.13 -37.48 16 15 C -0.02 -0.77 9.53 22.22 0.21 -0.56 16 16 C -0.25 -10.60 10.05 22.46 0.23 -10.38 16 17 C -0.08 -3.40 10.02 22.22 0.22 -3.18 16 18 C -0.19 -9.33 8.67 22.73 0.20 -9.14 16 19 C 0.16 8.27 5.55 -21.29 -0.12 8.15 16 20 C -0.47 -23.37 7.67 23.46 0.18 -23.19 16 21 H 0.10 4.37 5.79 -2.91 -0.02 4.35 16 22 C 0.04 1.79 5.23 85.26 0.45 2.23 16 23 N -0.81 -40.19 10.87 21.83 0.24 -39.95 16 24 Si 0.98 35.76 29.58 68.60 2.03 37.79 16 25 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 26 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 27 H -0.24 -8.01 7.11 99.48 0.71 -7.30 16 28 H 0.04 1.04 7.87 -2.38 -0.02 1.02 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 1.18 7.87 -2.38 -0.02 1.16 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.16 7.84 -2.39 -0.02 1.14 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.62 7.85 -2.39 -0.02 1.60 16 36 H 0.08 1.49 8.05 -2.38 -0.02 1.47 16 37 H 0.38 8.20 7.96 -74.06 -0.59 7.61 16 38 H 0.06 1.94 8.14 -2.38 -0.02 1.93 16 39 H 0.08 2.38 7.84 -2.39 -0.02 2.36 16 40 H 0.42 11.53 7.30 -96.75 -0.71 10.83 16 41 H 0.12 4.95 7.33 -2.91 -0.02 4.93 16 42 H 0.13 4.44 8.06 -2.91 -0.02 4.41 16 43 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 44 H 0.11 5.81 6.22 -2.91 -0.02 5.79 16 45 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 Total: -1.00 -65.04 368.82 -1.99 -67.03 By element: Atomic # 1 Polarization: 46.96 SS G_CDS: -0.28 Total: 46.69 kcal Atomic # 6 Polarization: -80.47 SS G_CDS: 3.06 Total: -77.41 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -0.62 Total: -76.54 kcal Atomic # 8 Polarization: -107.00 SS G_CDS: -5.90 Total: -112.91 kcal Atomic # 14 Polarization: 35.76 SS G_CDS: 2.03 Total: 37.79 kcal Atomic # 16 Polarization: 115.63 SS G_CDS: -0.28 Total: 115.35 kcal Total: -65.04 -1.99 -67.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601421102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.539 kcal (2) G-P(sol) polarization free energy of solvation -65.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds