Wall clock time and date at job start Tue Mar 31 2020 23:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.05679 * 2 1 4 4 C 1.54270 * 110.03270 * 121.41443 * 2 1 3 5 5 C 1.54882 * 104.19363 * 142.89502 * 4 2 1 6 6 C 1.54885 * 102.75079 * 322.05898 * 5 4 2 7 7 C 1.53874 * 110.03069 * 238.58269 * 2 1 3 8 8 O 1.42901 * 110.07078 * 121.41022 * 7 2 1 9 9 C 1.52995 * 110.03406 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47114 * 184.76867 * 9 7 2 11 11 S 1.65596 * 120.00028 * 165.66983 * 10 9 7 12 12 O 1.42096 * 106.40576 * 309.02328 * 11 10 9 13 13 O 1.42105 * 106.39996 * 176.09885 * 11 10 9 14 14 C 1.76199 * 107.21610 * 62.56502 * 11 10 9 15 15 C 1.37638 * 120.12850 * 244.13349 * 14 11 10 16 16 C 1.38612 * 120.25172 * 179.97438 * 15 14 11 17 17 C 1.38653 * 120.50096 * 359.97438 * 16 15 14 18 18 C 1.37596 * 120.24809 * 0.02562 * 17 16 15 19 19 C 1.40698 * 120.13113 * 64.11536 * 14 11 10 20 20 C 1.41395 * 120.24428 * 359.73909 * 19 14 11 21 21 H 1.08005 * 119.99770 * 330.65445 * 20 19 14 22 22 C 1.39945 * 120.00344 * 150.64610 * 20 19 14 23 23 N 1.30824 * 119.99651 * 347.55354 * 22 20 19 24 24 Si 1.86796 * 120.00329 * 167.55417 * 22 20 19 25 25 H 1.48504 * 109.47182 * 94.97477 * 24 22 20 26 26 H 1.48491 * 109.47420 * 214.97606 * 24 22 20 27 27 H 1.48500 * 109.46998 * 334.97698 * 24 22 20 28 28 H 1.09000 * 109.47221 * 181.91804 * 1 2 3 29 29 H 1.09000 * 109.46851 * 301.91837 * 1 2 3 30 30 H 1.09001 * 109.47212 * 61.91504 * 1 2 3 31 31 H 1.08996 * 110.48547 * 24.21550 * 4 2 1 32 32 H 1.08998 * 110.48418 * 261.57506 * 4 2 1 33 33 H 1.09000 * 110.75264 * 203.74148 * 5 4 2 34 34 H 1.09005 * 110.75493 * 80.37475 * 5 4 2 35 35 H 1.09001 * 110.48826 * 279.26282 * 6 5 4 36 36 H 1.09002 * 110.60068 * 156.67716 * 6 5 4 37 37 H 0.96700 * 113.99667 * 179.28166 * 8 7 2 38 38 H 1.08999 * 109.47385 * 64.76458 * 9 7 2 39 39 H 1.09005 * 109.46683 * 304.76175 * 9 7 2 40 40 H 0.97002 * 119.99644 * 345.66824 * 10 9 7 41 41 H 1.08006 * 119.87556 * 359.97438 * 15 14 11 42 42 H 1.07998 * 119.75240 * 179.97438 * 16 15 14 43 43 H 1.08002 * 119.87918 * 179.97438 * 17 16 15 44 44 H 1.08005 * 120.12891 * 180.02562 * 18 17 16 45 45 H 0.97002 * 119.99813 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7554 1.2369 5 6 3.3136 -1.5007 0.7192 6 6 2.8874 -1.9406 -0.7034 7 6 2.0570 -0.7536 -1.2337 8 8 2.8822 0.1087 -2.0196 9 6 0.8862 -1.2663 -2.0744 10 7 1.3983 -2.0773 -3.1818 11 16 0.3690 -3.0478 -4.0426 12 8 -0.3451 -3.8215 -3.0884 13 8 1.1401 -3.6223 -5.0889 14 6 -0.8142 -1.9963 -4.8164 15 6 -2.1446 -2.0840 -4.4745 16 6 -3.0775 -1.2577 -5.0813 17 6 -2.6833 -0.3343 -6.0375 18 6 -1.3587 -0.2292 -6.3950 19 6 -0.4028 -1.0634 -5.7861 20 6 0.9619 -0.9602 -6.1412 21 1 1.7276 -1.1979 -5.4175 22 6 1.3205 -0.5503 -7.4303 23 7 0.4169 -0.4974 -8.3749 24 14 3.0892 -0.0787 -7.8023 25 1 3.8081 -1.2531 -8.3586 26 1 3.1088 1.0280 -8.7922 27 1 3.7570 0.3637 -6.5519 28 1 -0.3634 -1.0271 0.0344 29 1 -0.3633 0.5433 0.8723 30 1 -0.3634 0.4838 -0.9067 31 1 1.3143 -1.4659 1.5967 32 1 2.3297 -0.0535 2.0255 33 1 3.5325 -2.3677 1.3424 34 1 4.1710 -0.8289 0.6752 35 1 2.2772 -2.8425 -0.6571 36 1 3.7625 -2.1051 -1.3322 37 1 3.2540 -0.3125 -2.8066 38 1 0.3264 -0.4199 -2.4724 39 1 0.2306 -1.8749 -1.4514 40 1 2.3404 -2.0458 -3.4108 41 1 -2.4628 -2.7994 -3.7305 42 1 -4.1193 -1.3336 -4.8071 43 1 -3.4187 0.3043 -6.5042 44 1 -1.0537 0.4911 -7.1398 45 1 0.6653 -0.2130 -9.2683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601421104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:48 Heat of formation + Delta-G solvation = -123.188880 kcal Electronic energy + Delta-G solvation = -29125.974602 eV Core-core repulsion = 25234.183066 eV Total energy + Delta-G solvation = -3891.791536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.81877 -37.60978 -36.24763 -35.23966 -34.86799 -34.08778 -33.81933 -31.52790 -30.25056 -29.58874 -28.39470 -25.57275 -25.10610 -24.09152 -21.69746 -21.16788 -21.05189 -19.07872 -18.64573 -17.73033 -17.19901 -16.90503 -16.05082 -15.71618 -15.49759 -15.23680 -14.73222 -14.40119 -14.19850 -13.87785 -13.75942 -13.33116 -13.18994 -12.90338 -12.76803 -12.62624 -12.14507 -11.98403 -11.78878 -11.56694 -11.44021 -11.33253 -11.28010 -11.19198 -11.12674 -11.09359 -11.03860 -10.76389 -10.73158 -10.65653 -10.54927 -10.23462 -9.91568 -9.77894 -9.46972 -9.43690 -8.80250 -8.05429 -7.62086 -7.05262 -4.77850 1.49438 2.31977 2.71495 2.95924 2.98986 3.10010 3.75556 3.87046 4.14670 4.39080 4.45526 4.57579 4.66431 4.78290 5.11015 5.24147 5.26755 5.30008 5.43575 5.46784 5.52012 5.62328 5.70338 5.75419 5.78864 5.86629 5.97340 6.00253 6.01957 6.07281 6.18245 6.21516 6.28493 6.34335 6.37072 6.39917 6.75448 6.91638 7.05838 7.28136 7.40545 7.48105 7.63476 7.77402 7.78594 7.86916 8.25888 8.48199 8.62731 9.88839 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011251 B = 0.005127 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.121873 B = 5459.541076 C = 6400.716516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.080 4.080 3 H 0.086 0.914 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.151 4.151 7 C 0.129 3.871 8 O -0.553 6.553 9 C 0.098 3.902 10 N -1.123 6.123 11 S 2.702 3.298 12 O -0.998 6.998 13 O -0.964 6.964 14 C -0.775 4.775 15 C -0.004 4.004 16 C -0.249 4.249 17 C -0.076 4.076 18 C -0.157 4.157 19 C 0.189 3.811 20 C -0.447 4.447 21 H 0.087 0.913 22 C 0.081 3.919 23 N -0.776 5.776 24 Si 0.914 3.086 25 H -0.264 1.264 26 H -0.273 1.273 27 H -0.254 1.254 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.377 0.623 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.405 0.595 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.122 0.878 45 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.199 2.428 12.190 13.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.099 4.099 3 H 0.105 0.895 4 C -0.157 4.157 5 C -0.159 4.159 6 C -0.189 4.189 7 C 0.087 3.913 8 O -0.359 6.359 9 C -0.028 4.028 10 N -0.880 5.880 11 S 2.800 3.200 12 O -0.988 6.988 13 O -0.955 6.955 14 C -0.870 4.870 15 C -0.024 4.024 16 C -0.270 4.270 17 C -0.095 4.095 18 C -0.177 4.177 19 C 0.184 3.816 20 C -0.475 4.475 21 H 0.105 0.895 22 C -0.141 4.141 23 N -0.399 5.399 24 Si 0.737 3.263 25 H -0.189 1.189 26 H -0.198 1.198 27 H -0.178 1.178 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.225 0.775 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.238 0.762 41 H 0.125 0.875 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.140 0.860 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.888 1.955 12.423 13.163 hybrid contribution 0.784 0.515 -1.223 1.541 sum 4.672 2.470 11.200 12.384 Atomic orbital electron populations 1.22065 0.94260 1.02597 1.02494 1.21652 0.95880 1.00291 0.92126 0.89528 1.22468 0.97467 0.98976 0.96837 1.22434 0.97822 0.99772 0.95860 1.23080 1.00153 0.98574 0.97097 1.22033 0.89290 0.89373 0.90594 1.86538 1.67434 1.41247 1.40698 1.22127 0.96780 0.95686 0.88232 1.55706 1.21910 1.63823 1.46541 1.01043 0.73285 0.73254 0.72468 1.93443 1.74088 1.68209 1.63091 1.93547 1.70397 1.75985 1.55559 1.29837 1.09383 1.24162 1.23651 1.20251 0.91791 0.95012 0.95296 1.20484 0.97558 1.03886 1.05031 1.20900 0.95897 0.96843 0.95883 1.21461 0.92222 1.01422 1.02555 1.16985 0.93096 0.85441 0.86038 1.19811 0.92261 1.37812 0.97613 0.89538 1.25944 1.00510 0.91965 0.95634 1.69783 1.36000 1.31335 1.02776 0.86176 0.81241 0.79134 0.79724 1.18863 1.19774 1.17793 0.91740 0.92357 0.91502 0.91145 0.91510 0.91608 0.91371 0.90181 0.91031 0.77515 0.90496 0.89653 0.76168 0.87462 0.88731 0.88813 0.85999 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 7.88 37.16 0.29 -1.42 16 2 C -0.08 -0.91 3.31 -89.50 -0.30 -1.21 16 3 H 0.09 1.03 7.96 -51.93 -0.41 0.62 16 4 C -0.12 -1.15 6.36 -25.07 -0.16 -1.31 16 5 C -0.12 -1.19 6.91 -24.74 -0.17 -1.36 16 6 C -0.15 -1.72 5.53 -25.07 -0.14 -1.86 16 7 C 0.13 1.64 1.04 -89.50 -0.09 1.55 16 8 O -0.55 -7.56 12.90 -35.23 -0.45 -8.02 16 9 C 0.10 1.46 4.02 -4.04 -0.02 1.44 16 10 N -1.12 -18.56 4.56 -10.61 -0.05 -18.61 16 11 S 2.70 57.43 4.95 -107.50 -0.53 56.90 16 12 O -1.00 -22.08 16.54 -57.17 -0.95 -23.03 16 13 O -0.96 -23.49 16.68 -57.17 -0.95 -24.44 16 14 C -0.77 -18.19 5.89 -38.87 -0.23 -18.42 16 15 C 0.00 -0.08 9.53 -39.66 -0.38 -0.46 16 16 C -0.25 -5.39 10.05 -39.29 -0.39 -5.78 16 17 C -0.08 -1.69 10.02 -39.66 -0.40 -2.09 16 18 C -0.16 -3.83 8.66 -38.87 -0.34 -4.17 16 19 C 0.19 4.73 5.53 -106.83 -0.59 4.14 16 20 C -0.45 -10.92 7.63 -37.74 -0.29 -11.20 16 21 H 0.09 1.93 5.79 -52.48 -0.30 1.63 16 22 C 0.08 1.91 5.21 -17.34 -0.09 1.82 16 23 N -0.78 -18.94 10.99 55.55 0.61 -18.33 16 24 Si 0.91 17.65 29.58 -169.99 -5.03 12.62 16 25 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 26 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 27 H -0.25 -4.67 7.11 56.52 0.40 -4.27 16 28 H 0.06 0.70 6.62 -51.93 -0.34 0.36 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.79 6.84 -51.93 -0.36 0.44 16 31 H 0.07 0.64 7.83 -51.93 -0.41 0.23 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.95 7.86 -51.93 -0.41 0.54 16 36 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 37 H 0.38 4.46 7.86 45.56 0.36 4.82 16 38 H 0.08 1.22 7.02 -51.93 -0.36 0.86 16 39 H 0.09 1.24 6.13 -51.93 -0.32 0.92 16 40 H 0.41 5.82 7.19 -34.47 -0.25 5.57 16 41 H 0.11 2.22 7.33 -52.48 -0.38 1.83 16 42 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 43 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.12 3.01 6.35 -52.48 -0.33 2.68 16 45 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 LS Contribution 364.91 15.07 5.50 5.50 Total: -1.00 -30.50 364.91 -10.75 -41.25 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -5.61 Total: 16.48 kcal Atomic # 6 Polarization: -37.04 SS G_CDS: -3.29 Total: -40.33 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.56 Total: -36.94 kcal Atomic # 8 Polarization: -53.13 SS G_CDS: -2.35 Total: -55.49 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Atomic # 16 Polarization: 57.43 SS G_CDS: -0.53 Total: 56.90 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.50 -10.75 -41.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601421104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.936 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds