Wall clock time and date at job start Tue Mar 31 2020 23:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42891 * 114.00457 * 2 1 4 4 H 1.08998 * 109.45222 * 30.03439 * 3 2 1 5 5 C 1.53043 * 109.46287 * 270.06970 * 3 2 1 6 6 C 1.53616 * 109.24361 * 178.49061 * 5 3 2 7 7 N 1.46929 * 108.54640 * 54.85729 * 6 5 3 8 8 S 1.65594 * 120.63552 * 126.36763 * 7 6 5 9 9 O 1.42100 * 106.39890 * 343.72484 * 8 7 6 10 10 O 1.42102 * 106.40630 * 210.80551 * 8 7 6 11 11 C 1.76202 * 107.21858 * 97.26117 * 8 7 6 12 12 C 1.37643 * 120.12559 * 115.58817 * 11 8 7 13 13 C 1.38611 * 120.24712 * 180.02562 * 12 11 8 14 14 C 1.38653 * 120.50207 * 359.97438 * 13 12 11 15 15 C 1.37592 * 120.25046 * 359.97438 * 14 13 12 16 16 C 1.40695 * 120.13222 * 295.60909 * 11 8 7 17 17 C 1.41399 * 120.24105 * 359.97438 * 16 11 8 18 18 H 1.07995 * 120.00180 * 328.76457 * 17 16 11 19 19 C 1.39940 * 119.99915 * 148.75571 * 17 16 11 20 20 N 1.30828 * 120.00191 * 348.10243 * 19 17 16 21 21 Si 1.86799 * 120.00141 * 168.10040 * 19 17 16 22 22 H 1.48497 * 109.47275 * 90.00074 * 21 19 17 23 23 H 1.48507 * 109.47255 * 210.00570 * 21 19 17 24 24 H 1.48503 * 109.46940 * 330.00421 * 21 19 17 25 25 C 1.46925 * 118.73600 * 306.09195 * 7 6 5 26 26 C 1.53041 * 109.46188 * 149.99838 * 3 2 1 27 27 H 1.08996 * 109.52668 * 301.35665 * 26 3 2 28 28 C 1.53002 * 109.49707 * 61.43645 * 26 3 2 29 29 H 1.09007 * 109.47113 * 300.00087 * 1 2 3 30 30 H 1.08999 * 109.47118 * 59.99704 * 1 2 3 31 31 H 1.08994 * 109.47733 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.49044 * 298.56340 * 5 3 2 33 33 H 1.09000 * 109.49429 * 58.62863 * 5 3 2 34 34 H 1.09002 * 109.74215 * 295.11476 * 6 5 3 35 35 H 1.09003 * 109.66632 * 174.54959 * 6 5 3 36 36 H 1.08007 * 119.87542 * 0.02562 * 12 11 8 37 37 H 1.07999 * 119.74737 * 180.02562 * 13 12 11 38 38 H 1.08005 * 119.87682 * 179.72801 * 14 13 12 39 39 H 1.07997 * 120.13080 * 179.97438 * 15 14 13 40 40 H 0.97007 * 120.00022 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.58907 * 173.64462 * 25 7 6 42 42 H 1.09005 * 109.59061 * 294.07366 * 25 7 6 43 43 H 1.08995 * 109.47220 * 185.53423 * 28 26 3 44 44 H 1.09004 * 109.46913 * 305.53561 * 28 26 3 45 45 H 1.09001 * 109.46964 * 65.53184 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 1 1.3451 1.9989 0.5144 5 6 2.2161 1.7719 -1.4430 6 6 2.8059 3.1903 -1.4372 7 7 4.0303 3.1840 -0.6251 8 16 5.4571 3.7513 -1.2451 9 8 5.2866 3.8108 -2.6546 10 8 6.4918 3.0058 -0.6183 11 6 5.6397 5.4154 -0.6954 12 6 6.6762 5.7560 0.1437 13 6 6.8219 7.0642 0.5781 14 6 5.9279 8.0438 0.1735 15 6 4.8849 7.7263 -0.6658 16 6 4.7263 6.4011 -1.1120 17 6 3.6576 6.0629 -1.9740 18 1 3.7776 5.2703 -2.6977 19 6 2.4444 6.7552 -1.8892 20 7 2.2124 7.5467 -0.8737 21 14 1.1561 6.5492 -3.2261 22 1 0.2531 5.4240 -2.8742 23 1 0.3645 7.7998 -3.3477 24 1 1.8265 6.2600 -4.5192 25 6 3.9633 2.6703 0.7499 26 6 3.3592 1.2628 0.7215 27 1 3.2155 0.9079 1.7420 28 6 4.3052 0.3160 -0.0199 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 2.9008 1.0925 -1.9507 33 1 1.2582 1.7790 -1.9631 34 1 2.0859 3.8867 -1.0074 35 1 3.0454 3.4921 -2.4569 36 1 7.3787 5.0010 0.4648 37 1 7.6384 7.3225 1.2361 38 1 6.0484 9.0590 0.5217 39 1 4.1895 8.4908 -0.9794 40 1 1.3716 8.0269 -0.8152 41 1 4.9667 2.6288 1.1738 42 1 3.3358 3.3251 1.3545 43 1 5.2303 0.2095 0.5466 44 1 3.8313 -0.6596 -0.1285 45 1 4.5279 0.7235 -1.0060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601429302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:10 Heat of formation + Delta-G solvation = -106.911066 kcal Electronic energy + Delta-G solvation = -29636.059070 eV Core-core repulsion = 25744.973392 eV Total energy + Delta-G solvation = -3891.085677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.35445 -37.62792 -36.59965 -36.38697 -34.89781 -33.92779 -32.37196 -30.92703 -30.23596 -29.60003 -26.93384 -26.41697 -25.54991 -23.46511 -22.65083 -21.66327 -21.17939 -19.25939 -18.12218 -17.64053 -17.27120 -16.32109 -16.05547 -15.51499 -15.37424 -15.05723 -14.97412 -14.60981 -14.32430 -14.05947 -13.43484 -13.25298 -13.20030 -12.92207 -12.78879 -12.57147 -12.35325 -12.00885 -11.76347 -11.66410 -11.44770 -11.30925 -11.27475 -11.23203 -11.15403 -11.00311 -10.95492 -10.86238 -10.62428 -10.54679 -10.39174 -10.08810 -9.90376 -9.48965 -9.37155 -9.26087 -8.40170 -8.03902 -7.61649 -7.09027 -4.81693 1.47248 2.30704 2.67338 2.91761 2.97924 3.04877 3.71732 3.73639 3.87077 4.34845 4.71988 4.84341 4.91545 5.14837 5.21799 5.30137 5.30963 5.35335 5.47402 5.50885 5.57554 5.63135 5.70671 5.80208 5.92702 6.00013 6.04555 6.13043 6.16931 6.20110 6.27472 6.31949 6.36999 6.50243 6.63950 6.64581 6.77002 6.91946 7.01982 7.22734 7.26130 7.30841 7.48136 7.65235 7.76854 7.90664 8.30757 8.48250 8.61766 9.85534 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010984 B = 0.006100 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.490416 B = 4589.156466 C = 6157.990284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.096 3.904 4 H 0.062 0.938 5 C -0.157 4.157 6 C 0.130 3.870 7 N -0.989 5.989 8 S 2.704 3.296 9 O -0.974 6.974 10 O -0.992 6.992 11 C -0.775 4.775 12 C -0.005 4.005 13 C -0.247 4.247 14 C -0.077 4.077 15 C -0.156 4.156 16 C 0.195 3.805 17 C -0.478 4.478 18 H 0.113 0.887 19 C 0.083 3.917 20 N -0.780 5.780 21 Si 0.900 3.100 22 H -0.261 1.261 23 H -0.273 1.273 24 H -0.252 1.252 25 C 0.131 3.869 26 C -0.096 4.096 27 H 0.082 0.918 28 C -0.142 4.142 29 H 0.038 0.962 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.120 0.880 40 H 0.286 0.714 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.252 -7.755 2.717 9.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.039 3.961 4 H 0.080 0.920 5 C -0.197 4.197 6 C 0.004 3.996 7 N -0.825 5.825 8 S 2.803 3.197 9 O -0.965 6.965 10 O -0.983 6.983 11 C -0.870 4.870 12 C -0.024 4.024 13 C -0.267 4.267 14 C -0.096 4.096 15 C -0.176 4.176 16 C 0.190 3.810 17 C -0.506 4.506 18 H 0.130 0.870 19 C -0.138 4.138 20 N -0.403 5.403 21 Si 0.723 3.277 22 H -0.186 1.186 23 H -0.198 1.198 24 H -0.175 1.175 25 C 0.005 3.995 26 C -0.116 4.116 27 H 0.100 0.900 28 C -0.199 4.199 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.138 0.862 40 H 0.097 0.903 41 H 0.111 0.889 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.761 -8.277 2.278 9.817 hybrid contribution -1.168 1.155 0.013 1.643 sum -5.930 -7.122 2.291 9.546 Atomic orbital electron populations 1.22737 0.81743 1.02183 0.99877 1.87891 1.19012 1.28366 1.95101 1.22106 0.94381 0.83834 0.95803 0.92014 1.22567 1.01652 0.98312 0.97153 1.21528 0.86391 0.94869 0.96804 1.57539 1.25619 1.77412 1.21888 1.00999 0.71311 0.74124 0.73236 1.93462 1.85404 1.87999 1.29605 1.93440 1.55186 1.71620 1.78073 1.29944 1.12801 1.20980 1.23280 1.20258 0.94039 0.95973 0.92176 1.20509 1.03149 0.94099 1.08938 1.20909 0.94857 0.97254 0.96556 1.21453 0.97875 0.96896 1.01330 1.17004 0.87738 0.90047 0.86188 1.20419 0.95772 1.17869 1.16537 0.86984 1.25946 0.99738 0.92692 0.95408 1.69797 1.24562 1.20003 1.25944 0.86398 0.79919 0.79193 0.82185 1.18597 1.19786 1.17485 1.21324 1.02320 0.92817 0.83033 1.21513 0.93960 0.96361 0.99741 0.89975 1.21762 0.98523 0.98903 1.00701 0.94295 0.94168 0.90092 0.90458 0.91263 0.90947 0.88113 0.87419 0.88664 0.88805 0.86190 0.90282 0.88938 0.91458 0.92468 0.92172 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.41 16 2 O -0.38 -5.07 9.64 -35.23 -0.34 -5.41 16 3 C 0.10 1.31 2.25 -26.69 -0.06 1.25 16 4 H 0.06 0.80 7.79 -51.93 -0.40 0.40 16 5 C -0.16 -2.29 5.37 -26.39 -0.14 -2.43 16 6 C 0.13 2.24 4.91 -3.49 -0.02 2.22 16 7 N -0.99 -18.16 2.58 -113.27 -0.29 -18.45 16 8 S 2.70 58.92 5.08 -107.50 -0.55 58.37 16 9 O -0.97 -23.24 14.35 -57.17 -0.82 -24.06 16 10 O -0.99 -22.16 15.79 -57.17 -0.90 -23.06 16 11 C -0.78 -18.36 5.96 -38.87 -0.23 -18.59 16 12 C 0.00 -0.10 9.53 -39.66 -0.38 -0.48 16 13 C -0.25 -5.35 10.05 -39.29 -0.39 -5.74 16 14 C -0.08 -1.70 10.02 -39.66 -0.40 -2.10 16 15 C -0.16 -3.79 8.65 -38.88 -0.34 -4.13 16 16 C 0.19 4.85 5.51 -106.82 -0.59 4.26 16 17 C -0.48 -11.46 6.70 -37.74 -0.25 -11.72 16 18 H 0.11 2.70 4.09 -52.49 -0.21 2.48 16 19 C 0.08 1.86 5.21 -17.34 -0.09 1.77 16 20 N -0.78 -17.87 11.08 55.55 0.62 -17.25 16 21 Si 0.90 16.92 29.58 -169.99 -5.03 11.89 16 22 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 23 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 24 H -0.25 -4.84 7.11 56.52 0.40 -4.44 16 25 C 0.13 2.06 5.84 -3.71 -0.02 2.04 16 26 C -0.10 -1.32 2.94 -90.50 -0.27 -1.59 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 C -0.14 -2.04 8.53 37.16 0.32 -1.73 16 29 H 0.04 0.36 8.09 -51.92 -0.42 -0.06 16 30 H 0.04 0.39 7.84 -51.93 -0.41 -0.02 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.16 6.46 -51.93 -0.34 0.82 16 33 H 0.07 0.90 7.84 -51.93 -0.41 0.49 16 34 H 0.07 1.26 8.10 -51.93 -0.42 0.83 16 35 H 0.10 1.87 5.51 -51.93 -0.29 1.58 16 36 H 0.11 2.24 7.33 -52.48 -0.38 1.86 16 37 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.12 2.94 6.47 -52.49 -0.34 2.60 16 40 H 0.29 5.95 8.30 -40.82 -0.34 5.61 16 41 H 0.09 1.46 7.11 -51.93 -0.37 1.09 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.82 7.57 -51.93 -0.39 0.42 16 45 H 0.05 0.88 6.14 -51.93 -0.32 0.57 16 LS Contribution 359.04 15.07 5.41 5.41 Total: -1.00 -28.15 359.04 -10.04 -38.20 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -6.37 Total: 9.91 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: -1.77 Total: -35.55 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.32 Total: -35.70 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -2.06 Total: -52.53 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.89 kcal Atomic # 16 Polarization: 58.92 SS G_CDS: -0.55 Total: 58.37 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.15 -10.04 -38.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601429302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.715 kcal (2) G-P(sol) polarization free energy of solvation -28.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds