Wall clock time and date at job start Tue Mar 31 2020 23:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00380 * 2 1 4 4 H 1.09000 * 109.45947 * 330.02551 * 3 2 1 5 5 C 1.53040 * 109.46112 * 90.00156 * 3 2 1 6 6 C 1.53187 * 109.31049 * 181.37267 * 5 3 2 7 7 N 1.46925 * 108.78140 * 305.36305 * 6 5 3 8 8 S 1.65595 * 120.63500 * 233.59144 * 7 6 5 9 9 O 1.42105 * 106.40104 * 342.78085 * 8 7 6 10 10 O 1.42095 * 106.40393 * 209.86073 * 8 7 6 11 11 C 1.76200 * 107.22037 * 96.31564 * 8 7 6 12 12 C 1.37639 * 120.12457 * 112.84598 * 11 8 7 13 13 C 1.38621 * 120.24893 * 179.97438 * 12 11 8 14 14 C 1.38658 * 120.49796 * 0.02844 * 13 12 11 15 15 C 1.37594 * 120.24807 * 359.97438 * 14 13 12 16 16 C 1.40694 * 120.12949 * 292.82901 * 11 8 7 17 17 C 1.41395 * 120.24626 * 0.02562 * 16 11 8 18 18 H 1.08005 * 119.99632 * 329.71442 * 17 16 11 19 19 C 1.39944 * 120.00289 * 149.70952 * 17 16 11 20 20 N 1.30827 * 119.99722 * 348.08554 * 19 17 16 21 21 Si 1.86791 * 120.00222 * 168.08920 * 19 17 16 22 22 H 1.48495 * 109.47311 * 59.99592 * 21 19 17 23 23 H 1.48501 * 109.47596 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46925 * 300.00114 * 21 19 17 25 25 C 1.46928 * 118.73432 * 53.85965 * 7 6 5 26 26 C 1.53039 * 109.44832 * 210.06325 * 3 2 1 27 27 H 1.08993 * 109.50217 * 298.57129 * 26 3 2 28 28 C 1.53006 * 109.49722 * 58.67229 * 26 3 2 29 29 H 1.09009 * 109.46672 * 299.99925 * 1 2 3 30 30 H 1.08994 * 109.47018 * 59.99660 * 1 2 3 31 31 H 1.08998 * 109.47833 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.49686 * 61.42056 * 5 3 2 33 33 H 1.08996 * 109.49636 * 301.32634 * 5 3 2 34 34 H 1.09006 * 109.58843 * 185.57609 * 6 5 3 35 35 H 1.08999 * 109.70688 * 65.22316 * 6 5 3 36 36 H 1.08007 * 119.87739 * 359.97438 * 12 11 8 37 37 H 1.07993 * 119.74733 * 180.02562 * 13 12 11 38 38 H 1.08004 * 119.87394 * 179.72693 * 14 13 12 39 39 H 1.08003 * 120.12339 * 179.97438 * 15 14 13 40 40 H 0.97003 * 119.99910 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.58421 * 65.92762 * 25 7 6 42 42 H 1.08998 * 109.58640 * 186.35489 * 25 7 6 43 43 H 1.08995 * 109.47421 * 59.99927 * 28 26 3 44 44 H 1.08999 * 109.46830 * 179.97438 * 28 26 3 45 45 H 1.08999 * 109.46867 * 299.99765 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3447 1.9993 -0.5135 5 6 2.2178 1.7712 1.4430 6 6 2.8091 3.1843 1.4391 7 7 4.0314 3.1833 0.6238 8 16 5.4590 3.7501 1.2426 9 8 5.1218 4.5225 2.3868 10 8 6.1947 4.2695 0.1435 11 6 6.3619 2.3564 1.8318 12 6 7.5306 1.9779 1.2111 13 6 8.2433 0.8822 1.6728 14 6 7.7887 0.1554 2.7626 15 6 6.6229 0.5157 3.3984 16 6 5.8912 1.6266 2.9387 17 6 4.6918 2.0060 3.5842 18 1 4.3917 3.0434 3.5994 19 6 3.8936 1.0375 4.2032 20 7 4.1239 -0.2328 3.9914 21 14 2.4993 1.5584 5.3318 22 1 1.5311 2.3888 4.5717 23 1 1.8114 0.3521 5.8582 24 1 3.0474 2.3483 6.4636 25 6 3.9616 2.6755 -0.7532 26 6 3.3585 1.2628 -0.7229 27 1 4.0329 0.5880 -0.1958 28 6 3.1543 0.7658 -2.1555 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3635 -1.0276 0.0005 32 1 2.9028 1.0915 1.9497 33 1 1.2604 1.7788 1.9639 34 1 3.0508 3.4821 2.4594 35 1 2.0880 3.8833 1.0156 36 1 7.8938 2.5366 0.3611 37 1 9.1595 0.5926 1.1800 38 1 8.3496 -0.6992 3.1111 39 1 6.2704 -0.0521 4.2468 40 1 3.5709 -0.9042 4.4207 41 1 3.3315 3.3320 -1.3533 42 1 4.9639 2.6373 -1.1798 43 1 2.4811 1.4421 -2.6823 44 1 4.1148 0.7361 -2.6701 45 1 2.7217 -0.2344 -2.1349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601429303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:15 Heat of formation + Delta-G solvation = -106.739243 kcal Electronic energy + Delta-G solvation = -30165.436512 eV Core-core repulsion = 26274.358285 eV Total energy + Delta-G solvation = -3891.078227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.08587 -37.59288 -36.41631 -36.37662 -34.90782 -33.94001 -32.72137 -30.80525 -30.21777 -29.55365 -26.87057 -26.17603 -25.47944 -23.40183 -21.89127 -21.61108 -21.12135 -19.81458 -18.16229 -17.67695 -17.20973 -16.26452 -15.98986 -15.55898 -15.37187 -15.07250 -14.70958 -14.41931 -14.10794 -13.70257 -13.45178 -13.22937 -13.12078 -12.98716 -12.75962 -12.49144 -12.21824 -12.00664 -11.93707 -11.58687 -11.36188 -11.33494 -11.25679 -11.23689 -11.17269 -11.01739 -10.78338 -10.65422 -10.63254 -10.56684 -10.25955 -10.00670 -9.87180 -9.35702 -9.23776 -9.14476 -8.42347 -8.00283 -7.58246 -7.05105 -4.77430 1.47954 2.34673 2.72320 2.93506 2.97216 3.08857 3.73680 3.80350 3.98987 4.38263 4.74093 4.93384 5.08644 5.23078 5.27613 5.37989 5.42231 5.46818 5.52171 5.57881 5.68818 5.73299 5.76598 5.89347 5.93037 5.96072 6.04214 6.13871 6.20255 6.23648 6.31261 6.38908 6.41774 6.61874 6.70950 6.80253 6.95603 6.99041 7.05496 7.24669 7.34633 7.49346 7.52001 7.69359 7.81124 7.94975 8.35262 8.51246 8.65810 9.88153 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009150 B = 0.007539 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.323681 B = 3713.160960 C = 4843.856320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.379 6.379 3 C 0.103 3.897 4 H 0.052 0.948 5 C -0.165 4.165 6 C 0.131 3.869 7 N -0.994 5.994 8 S 2.702 3.298 9 O -0.973 6.973 10 O -0.996 6.996 11 C -0.774 4.774 12 C -0.004 4.004 13 C -0.247 4.247 14 C -0.077 4.077 15 C -0.155 4.155 16 C 0.195 3.805 17 C -0.477 4.477 18 H 0.115 0.885 19 C 0.086 3.914 20 N -0.773 5.773 21 Si 0.897 3.103 22 H -0.254 1.254 23 H -0.275 1.275 24 H -0.258 1.258 25 C 0.137 3.863 26 C -0.103 4.103 27 H 0.092 0.908 28 C -0.141 4.141 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.054 0.946 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.122 0.878 40 H 0.287 0.713 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.048 0.952 44 H 0.055 0.945 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.274 -0.211 -6.063 9.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.298 6.298 3 C 0.045 3.955 4 H 0.070 0.930 5 C -0.204 4.204 6 C 0.005 3.995 7 N -0.829 5.829 8 S 2.802 3.198 9 O -0.964 6.964 10 O -0.986 6.986 11 C -0.870 4.870 12 C -0.024 4.024 13 C -0.268 4.268 14 C -0.096 4.096 15 C -0.175 4.175 16 C 0.191 3.809 17 C -0.505 4.505 18 H 0.133 0.867 19 C -0.136 4.136 20 N -0.396 5.396 21 Si 0.720 3.280 22 H -0.178 1.178 23 H -0.200 1.200 24 H -0.182 1.182 25 C 0.011 3.989 26 C -0.123 4.123 27 H 0.110 0.890 28 C -0.199 4.199 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.079 0.921 34 H 0.123 0.877 35 H 0.072 0.928 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.139 0.861 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.107 0.893 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.042 0.315 -6.004 9.260 hybrid contribution -0.715 -0.719 0.739 1.255 sum -7.758 -0.404 -5.265 9.384 Atomic orbital electron populations 1.22701 0.82141 1.02099 0.99448 1.87941 1.18622 1.28253 1.94987 1.22065 0.93915 0.83709 0.95765 0.92990 1.22569 1.02117 0.98826 0.96922 1.21381 0.85469 0.95949 0.96677 1.57694 1.24444 1.80151 1.20578 1.01056 0.71838 0.74478 0.72452 1.93460 1.83435 1.69132 1.50326 1.93437 1.71521 1.78948 1.54733 1.29853 1.14522 1.29352 1.13233 1.20236 0.92429 0.94146 0.95581 1.20487 1.02440 1.00879 1.02952 1.20898 0.96052 0.97244 0.95397 1.21474 0.94315 1.00219 1.01508 1.16970 0.89767 0.88342 0.85844 1.20454 1.03905 0.97178 1.28959 0.86735 1.25904 0.98825 0.94254 0.94595 1.69786 1.35231 1.01257 1.33305 0.86514 0.80689 0.79517 0.81248 1.17833 1.19988 1.18232 1.21391 1.01954 0.93110 0.82455 1.21669 0.96490 0.97786 0.96401 0.88997 1.21711 1.01395 1.01519 0.95278 0.94377 0.94611 0.90192 0.87115 0.92072 0.87725 0.92797 0.87554 0.88792 0.88917 0.86064 0.90144 0.91743 0.89300 0.93265 0.92556 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.82 101.05 1.09 1.49 16 2 O -0.38 -5.99 9.62 -35.23 -0.34 -6.33 16 3 C 0.10 1.59 2.02 -26.69 -0.05 1.53 16 4 H 0.05 0.70 7.79 -51.93 -0.40 0.30 16 5 C -0.17 -2.86 5.56 -26.61 -0.15 -3.01 16 6 C 0.13 2.28 5.51 -3.71 -0.02 2.26 16 7 N -0.99 -18.42 3.28 -113.27 -0.37 -18.79 16 8 S 2.70 59.03 5.10 -107.50 -0.55 58.48 16 9 O -0.97 -23.13 14.34 -57.17 -0.82 -23.95 16 10 O -1.00 -22.50 15.90 -57.17 -0.91 -23.41 16 11 C -0.77 -18.25 5.97 -38.87 -0.23 -18.48 16 12 C 0.00 -0.09 9.54 -39.66 -0.38 -0.47 16 13 C -0.25 -5.38 10.05 -39.29 -0.39 -5.77 16 14 C -0.08 -1.71 10.02 -39.66 -0.40 -2.11 16 15 C -0.16 -3.77 8.65 -38.87 -0.34 -4.11 16 16 C 0.20 4.83 5.52 -106.83 -0.59 4.24 16 17 C -0.48 -11.35 5.91 -37.74 -0.22 -11.57 16 18 H 0.12 2.76 3.89 -52.48 -0.20 2.55 16 19 C 0.09 1.91 3.69 -17.34 -0.06 1.85 16 20 N -0.77 -17.63 11.01 55.55 0.61 -17.02 16 21 Si 0.90 17.16 29.58 -169.99 -5.03 12.13 16 22 H -0.25 -4.60 7.11 56.52 0.40 -4.20 16 23 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 24 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 25 C 0.14 2.17 5.67 -3.48 -0.02 2.15 16 26 C -0.10 -1.62 2.64 -90.27 -0.24 -1.86 16 27 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 28 C -0.14 -1.81 9.04 37.16 0.34 -1.47 16 29 H 0.04 0.44 7.85 -51.92 -0.41 0.03 16 30 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.11 2.27 5.62 -51.93 -0.29 1.98 16 33 H 0.06 0.97 7.85 -51.93 -0.41 0.56 16 34 H 0.10 2.01 4.87 -51.93 -0.25 1.75 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.11 2.22 7.32 -52.48 -0.38 1.84 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 38 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.12 2.97 6.39 -52.48 -0.34 2.63 16 40 H 0.29 6.06 8.30 -40.82 -0.34 5.72 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.09 1.42 7.30 -51.93 -0.38 1.04 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.84 7.65 -51.93 -0.40 0.44 16 LS Contribution 358.61 15.07 5.40 5.40 Total: -1.00 -27.88 358.61 -10.07 -37.94 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -6.40 Total: 10.87 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: -1.67 Total: -35.33 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.24 Total: -35.81 kcal Atomic # 8 Polarization: -51.61 SS G_CDS: -2.07 Total: -53.68 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Atomic # 16 Polarization: 59.03 SS G_CDS: -0.55 Total: 58.48 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.88 -10.07 -37.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601429303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.798 kcal (2) G-P(sol) polarization free energy of solvation -27.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds