Wall clock time and date at job start Tue Mar 31 2020 23:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00380 * 2 1 4 4 H 1.09000 * 109.45947 * 330.02551 * 3 2 1 5 5 C 1.53040 * 109.46112 * 90.00156 * 3 2 1 6 6 C 1.53187 * 109.31049 * 181.37267 * 5 3 2 7 7 N 1.46925 * 108.78140 * 305.36305 * 6 5 3 8 8 S 1.65595 * 120.63500 * 233.59144 * 7 6 5 9 9 O 1.42105 * 106.40104 * 342.78085 * 8 7 6 10 10 O 1.42095 * 106.40393 * 209.86073 * 8 7 6 11 11 C 1.76200 * 107.22037 * 96.31564 * 8 7 6 12 12 C 1.37639 * 120.12457 * 112.84598 * 11 8 7 13 13 C 1.38621 * 120.24893 * 179.97438 * 12 11 8 14 14 C 1.38658 * 120.49796 * 0.02844 * 13 12 11 15 15 C 1.37594 * 120.24807 * 359.97438 * 14 13 12 16 16 C 1.40694 * 120.12949 * 292.82901 * 11 8 7 17 17 C 1.41395 * 120.24626 * 0.02562 * 16 11 8 18 18 H 1.08005 * 119.99632 * 329.71442 * 17 16 11 19 19 C 1.39944 * 120.00289 * 149.70952 * 17 16 11 20 20 N 1.30827 * 119.99722 * 348.08554 * 19 17 16 21 21 Si 1.86791 * 120.00222 * 168.08920 * 19 17 16 22 22 H 1.48495 * 109.47311 * 59.99592 * 21 19 17 23 23 H 1.48501 * 109.47596 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46925 * 300.00114 * 21 19 17 25 25 C 1.46928 * 118.73432 * 53.85965 * 7 6 5 26 26 C 1.53039 * 109.44832 * 210.06325 * 3 2 1 27 27 H 1.08993 * 109.50217 * 298.57129 * 26 3 2 28 28 C 1.53006 * 109.49722 * 58.67229 * 26 3 2 29 29 H 1.09009 * 109.46672 * 299.99925 * 1 2 3 30 30 H 1.08994 * 109.47018 * 59.99660 * 1 2 3 31 31 H 1.08998 * 109.47833 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.49686 * 61.42056 * 5 3 2 33 33 H 1.08996 * 109.49636 * 301.32634 * 5 3 2 34 34 H 1.09006 * 109.58843 * 185.57609 * 6 5 3 35 35 H 1.08999 * 109.70688 * 65.22316 * 6 5 3 36 36 H 1.08007 * 119.87739 * 359.97438 * 12 11 8 37 37 H 1.07993 * 119.74733 * 180.02562 * 13 12 11 38 38 H 1.08004 * 119.87394 * 179.72693 * 14 13 12 39 39 H 1.08003 * 120.12339 * 179.97438 * 15 14 13 40 40 H 0.97003 * 119.99910 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.58421 * 65.92762 * 25 7 6 42 42 H 1.08998 * 109.58640 * 186.35489 * 25 7 6 43 43 H 1.08995 * 109.47421 * 59.99927 * 28 26 3 44 44 H 1.08999 * 109.46830 * 179.97438 * 28 26 3 45 45 H 1.08999 * 109.46867 * 299.99765 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3447 1.9993 -0.5135 5 6 2.2178 1.7712 1.4430 6 6 2.8091 3.1843 1.4391 7 7 4.0314 3.1833 0.6238 8 16 5.4590 3.7501 1.2426 9 8 5.1218 4.5225 2.3868 10 8 6.1947 4.2695 0.1435 11 6 6.3619 2.3564 1.8318 12 6 7.5306 1.9779 1.2111 13 6 8.2433 0.8822 1.6728 14 6 7.7887 0.1554 2.7626 15 6 6.6229 0.5157 3.3984 16 6 5.8912 1.6266 2.9387 17 6 4.6918 2.0060 3.5842 18 1 4.3917 3.0434 3.5994 19 6 3.8936 1.0375 4.2032 20 7 4.1239 -0.2328 3.9914 21 14 2.4993 1.5584 5.3318 22 1 1.5311 2.3888 4.5717 23 1 1.8114 0.3521 5.8582 24 1 3.0474 2.3483 6.4636 25 6 3.9616 2.6755 -0.7532 26 6 3.3585 1.2628 -0.7229 27 1 4.0329 0.5880 -0.1958 28 6 3.1543 0.7658 -2.1555 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3635 -1.0276 0.0005 32 1 2.9028 1.0915 1.9497 33 1 1.2604 1.7788 1.9639 34 1 3.0508 3.4821 2.4594 35 1 2.0880 3.8833 1.0156 36 1 7.8938 2.5366 0.3611 37 1 9.1595 0.5926 1.1800 38 1 8.3496 -0.6992 3.1111 39 1 6.2704 -0.0521 4.2468 40 1 3.5709 -0.9042 4.4207 41 1 3.3315 3.3320 -1.3533 42 1 4.9639 2.6373 -1.1798 43 1 2.4811 1.4421 -2.6823 44 1 4.1148 0.7361 -2.6701 45 1 2.7217 -0.2344 -2.1349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601429303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:14 Heat of formation + Delta-G solvation = -123.614213 kcal Electronic energy + Delta-G solvation = -30166.168266 eV Core-core repulsion = 26274.358285 eV Total energy + Delta-G solvation = -3891.809980 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.31620 -39.34136 -38.16615 -37.62319 -36.69308 -35.66329 -33.96884 -32.12713 -31.98140 -31.32998 -27.92741 -27.37119 -27.14182 -24.68388 -23.45472 -23.11169 -22.85249 -21.08647 -19.77696 -19.42412 -18.78901 -17.72620 -17.41467 -17.18558 -16.90624 -16.25501 -16.08285 -15.85102 -15.64191 -15.15228 -14.97962 -14.84900 -14.48040 -14.41999 -14.19866 -13.83104 -13.72558 -13.56167 -13.16427 -13.05005 -12.99618 -12.91849 -12.89009 -12.78145 -12.56689 -12.48405 -12.32876 -12.16011 -12.01044 -11.82575 -11.66219 -11.54665 -11.32490 -10.97287 -10.96630 -10.31893 -9.91305 -9.71774 -9.38168 -8.75537 -6.56654 -0.18950 0.56775 1.00034 1.36109 1.44619 1.49000 2.14685 2.24663 2.65547 2.88331 3.03492 3.51622 3.62227 3.75967 3.97695 4.06704 4.16966 4.32981 4.33069 4.45342 4.49929 4.52239 4.56656 4.60892 4.64916 4.71767 4.73593 4.84152 4.84608 4.90894 4.99610 5.01515 5.11221 5.20696 5.26570 5.32341 5.38620 5.47506 5.57546 5.62746 5.71662 5.83434 5.90769 6.02431 6.17559 6.42522 6.55240 6.74646 6.87178 8.19863 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009150 B = 0.007539 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.323681 B = 3713.160960 C = 4843.856320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.107 3.893 4 H 0.082 0.918 5 C -0.164 4.164 6 C 0.125 3.875 7 N -0.990 5.990 8 S 2.717 3.283 9 O -0.997 6.997 10 O -1.006 7.006 11 C -0.795 4.795 12 C -0.017 4.017 13 C -0.252 4.252 14 C -0.078 4.078 15 C -0.184 4.184 16 C 0.170 3.830 17 C -0.489 4.489 18 H 0.108 0.892 19 C 0.065 3.935 20 N -0.794 5.794 21 Si 0.939 3.061 22 H -0.236 1.236 23 H -0.264 1.264 24 H -0.265 1.265 25 C 0.130 3.870 26 C -0.101 4.101 27 H 0.048 0.952 28 C -0.134 4.134 29 H 0.040 0.960 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.110 0.890 40 H 0.293 0.707 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.078 0.118 -7.562 11.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C 0.049 3.951 4 H 0.100 0.900 5 C -0.204 4.204 6 C 0.001 3.999 7 N -0.827 5.827 8 S 2.815 3.185 9 O -0.988 6.988 10 O -0.996 6.996 11 C -0.888 4.888 12 C -0.037 4.037 13 C -0.272 4.272 14 C -0.097 4.097 15 C -0.204 4.204 16 C 0.166 3.834 17 C -0.517 4.517 18 H 0.126 0.874 19 C -0.155 4.155 20 N -0.417 5.417 21 Si 0.760 3.240 22 H -0.159 1.159 23 H -0.188 1.188 24 H -0.190 1.190 25 C 0.005 3.995 26 C -0.121 4.121 27 H 0.067 0.933 28 C -0.191 4.191 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.128 0.872 40 H 0.104 0.896 41 H 0.119 0.881 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.830 0.625 -7.509 11.608 hybrid contribution -0.146 -0.873 1.169 1.466 sum -8.976 -0.248 -6.340 10.992 Atomic orbital electron populations 1.22922 0.80151 1.03329 1.00627 1.87918 1.20908 1.28522 1.95058 1.22023 0.94231 0.84311 0.94504 0.89996 1.22510 1.01647 0.97840 0.98357 1.21528 0.85503 0.97004 0.95906 1.57467 1.23464 1.80109 1.21669 1.00516 0.72242 0.73918 0.71857 1.93418 1.83909 1.69876 1.51564 1.93411 1.72364 1.79127 1.54724 1.30219 1.15498 1.29781 1.13339 1.20551 0.92376 0.94718 0.96022 1.20851 1.03302 1.00371 1.02677 1.21215 0.95484 0.97830 0.95185 1.21522 0.95656 1.01017 1.02162 1.17271 0.90532 0.89009 0.86626 1.20481 1.04136 0.97153 1.29911 0.87434 1.26422 1.00237 0.93900 0.94989 1.69820 1.36090 1.02063 1.33713 0.85872 0.78881 0.79748 0.79546 1.15877 1.18831 1.18989 1.21688 1.02651 0.93927 0.81222 1.21590 0.95964 0.96717 0.97832 0.93302 1.21654 1.02340 1.01655 0.93488 0.94090 0.92409 0.89118 0.90814 0.90803 0.89844 0.89023 0.86213 0.85783 0.86348 0.87182 0.89611 0.88057 0.89814 0.90689 0.92019 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.82 113.37 1.23 1.77 16 2 O -0.40 -12.10 9.62 -148.98 -1.43 -13.54 16 3 C 0.11 3.06 2.02 30.62 0.06 3.12 16 4 H 0.08 1.86 7.79 -2.39 -0.02 1.85 16 5 C -0.16 -5.50 5.56 30.67 0.17 -5.33 16 6 C 0.13 4.22 5.51 86.36 0.48 4.70 16 7 N -0.99 -35.90 3.28 -512.27 -1.68 -37.58 16 8 S 2.72 119.51 5.10 -56.49 -0.29 119.22 16 9 O -1.00 -48.21 14.34 -128.00 -1.84 -50.04 16 10 O -1.01 -45.14 15.90 -128.00 -2.03 -47.18 16 11 C -0.79 -38.36 5.97 22.73 0.14 -38.22 16 12 C -0.02 -0.77 9.54 22.22 0.21 -0.56 16 13 C -0.25 -10.85 10.05 22.46 0.23 -10.63 16 14 C -0.08 -3.51 10.02 22.22 0.22 -3.29 16 15 C -0.18 -9.22 8.65 22.73 0.20 -9.02 16 16 C 0.17 8.70 5.52 -21.29 -0.12 8.59 16 17 C -0.49 -24.01 5.91 23.46 0.14 -23.87 16 18 H 0.11 5.35 3.89 -2.91 -0.01 5.34 16 19 C 0.06 2.93 3.69 85.26 0.31 3.24 16 20 N -0.79 -37.24 11.01 21.83 0.24 -37.00 16 21 Si 0.94 34.87 29.58 68.60 2.03 36.90 16 22 H -0.24 -7.98 7.11 99.48 0.71 -7.28 16 23 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 24 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 25 C 0.13 3.90 5.67 86.51 0.49 4.39 16 26 C -0.10 -3.03 2.64 -10.57 -0.03 -3.06 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 C -0.13 -3.11 9.04 71.98 0.65 -2.46 16 29 H 0.04 0.83 7.85 -2.38 -0.02 0.81 16 30 H 0.06 0.96 8.08 -2.39 -0.02 0.94 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.07 3.07 5.62 -2.39 -0.01 3.06 16 33 H 0.07 2.21 7.85 -2.39 -0.02 2.19 16 34 H 0.08 3.19 4.87 -2.38 -0.01 3.18 16 35 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.12 4.98 7.32 -2.91 -0.02 4.96 16 37 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 38 H 0.12 4.55 8.06 -2.91 -0.02 4.52 16 39 H 0.11 5.63 6.39 -2.91 -0.02 5.61 16 40 H 0.29 12.60 8.30 -92.71 -0.77 11.84 16 41 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.08 2.58 7.30 -2.39 -0.02 2.57 16 43 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.06 1.42 7.65 -2.39 -0.02 1.40 16 Total: -1.00 -61.87 358.61 0.37 -61.50 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: 1.00 Total: 38.36 kcal Atomic # 6 Polarization: -75.01 SS G_CDS: 4.38 Total: -70.63 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -1.44 Total: -74.58 kcal Atomic # 8 Polarization: -105.46 SS G_CDS: -5.30 Total: -110.76 kcal Atomic # 14 Polarization: 34.87 SS G_CDS: 2.03 Total: 36.90 kcal Atomic # 16 Polarization: 119.51 SS G_CDS: -0.29 Total: 119.22 kcal Total: -61.87 0.37 -61.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601429303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.117 kcal (2) G-P(sol) polarization free energy of solvation -61.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds