Wall clock time and date at job start Tue Mar 31 2020 23:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99580 * 2 1 4 4 H 1.08996 * 109.45227 * 30.03342 * 3 2 1 5 5 C 1.53039 * 109.46065 * 270.06245 * 3 2 1 6 6 C 1.53629 * 109.24296 * 178.49320 * 5 3 2 7 7 N 1.46921 * 108.53823 * 54.86103 * 6 5 3 8 8 S 1.65606 * 120.62775 * 126.37267 * 7 6 5 9 9 O 1.42098 * 106.39961 * 149.25798 * 8 7 6 10 10 O 1.42099 * 106.40023 * 16.33604 * 8 7 6 11 11 C 1.76202 * 107.21411 * 262.79627 * 8 7 6 12 12 C 1.37640 * 120.12254 * 247.44940 * 11 8 7 13 13 C 1.38616 * 120.24449 * 179.97438 * 12 11 8 14 14 C 1.38661 * 120.50410 * 359.97438 * 13 12 11 15 15 C 1.37597 * 120.24387 * 0.02562 * 14 13 12 16 16 C 1.40691 * 120.13055 * 67.42756 * 11 8 7 17 17 C 1.41398 * 120.24397 * 0.04699 * 16 11 8 18 18 H 1.07999 * 119.99945 * 28.92496 * 17 16 11 19 19 C 1.39943 * 120.00290 * 208.92821 * 17 16 11 20 20 N 1.30832 * 119.99672 * 15.82227 * 19 17 16 21 21 Si 1.86797 * 120.00186 * 195.82844 * 19 17 16 22 22 H 1.48495 * 109.47653 * 65.09419 * 21 19 17 23 23 H 1.48501 * 109.46802 * 185.09543 * 21 19 17 24 24 H 1.48503 * 109.46675 * 305.09283 * 21 19 17 25 25 C 1.46928 * 118.74027 * 306.09033 * 7 6 5 26 26 C 1.53049 * 109.45780 * 150.00149 * 3 2 1 27 27 H 1.08998 * 109.52276 * 61.41501 * 26 3 2 28 28 C 1.53000 * 109.49655 * 301.33728 * 26 3 2 29 29 H 1.09006 * 109.47343 * 59.99928 * 1 2 3 30 30 H 1.09006 * 109.47460 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47631 * 300.00059 * 1 2 3 32 32 H 1.08996 * 109.50412 * 298.57146 * 5 3 2 33 33 H 1.09007 * 109.49212 * 58.67150 * 5 3 2 34 34 H 1.09000 * 109.73639 * 295.12560 * 6 5 3 35 35 H 1.09000 * 109.65955 * 174.55392 * 6 5 3 36 36 H 1.07996 * 119.87953 * 0.02562 * 12 11 8 37 37 H 1.08001 * 119.74912 * 180.02562 * 13 12 11 38 38 H 1.07997 * 119.87615 * 180.28268 * 14 13 12 39 39 H 1.07997 * 120.12575 * 179.97438 * 15 14 13 40 40 H 0.97001 * 119.99562 * 180.02562 * 20 19 17 41 41 H 1.09001 * 109.58225 * 173.65318 * 25 7 6 42 42 H 1.08998 * 109.58694 * 294.07637 * 25 7 6 43 43 H 1.09007 * 109.46905 * 296.95478 * 28 26 3 44 44 H 1.09004 * 109.47488 * 56.94915 * 28 26 3 45 45 H 1.09000 * 109.47303 * 176.95463 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9989 0.5144 5 6 2.2160 1.7719 -1.4430 6 6 2.8057 3.1905 -1.4372 7 7 4.0300 3.1842 -0.6251 8 16 5.4568 3.7517 -1.2452 9 8 6.1873 4.2840 -0.1487 10 8 5.1193 4.5125 -2.3969 11 6 6.3674 2.3568 -1.8195 12 6 7.5328 1.9852 -1.1886 13 6 8.2508 0.8880 -1.6379 14 6 7.8049 0.1524 -2.7255 15 6 6.6425 0.5057 -3.3715 16 6 5.9057 1.6183 -2.9244 17 6 4.7100 1.9910 -3.5808 18 1 4.3967 3.0245 -3.5865 19 6 3.9325 1.0206 -4.2229 20 7 4.1258 -0.2476 -3.9661 21 14 2.6187 1.5360 -5.4467 22 1 3.2611 2.1781 -6.6215 23 1 1.8588 0.3398 -5.8902 24 1 1.6918 2.5000 -4.8010 25 6 3.9630 2.6705 0.7499 26 6 3.3592 1.2630 0.7215 27 1 4.0334 0.5884 0.1938 28 6 3.1567 0.7652 2.1540 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.9007 1.0927 -1.9508 33 1 1.2580 1.7796 -1.9630 34 1 2.0856 3.8868 -1.0074 35 1 3.0451 3.4922 -2.4569 36 1 7.8888 2.5502 -0.3398 37 1 9.1641 0.6033 -1.1366 38 1 8.3699 -0.7034 -3.0642 39 1 6.2972 -0.0683 -4.2186 40 1 3.5871 -0.9202 -4.4114 41 1 4.9664 2.6292 1.1737 42 1 3.3355 3.3253 1.3544 43 1 2.5273 1.4697 2.6979 44 1 2.6747 -0.2123 2.1343 45 1 4.1236 0.6836 2.6504 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601429305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:22 Heat of formation + Delta-G solvation = -124.200328 kcal Electronic energy + Delta-G solvation = -30142.329122 eV Core-core repulsion = 26250.493725 eV Total energy + Delta-G solvation = -3891.835396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.31322 -39.33651 -38.16428 -37.62141 -36.69110 -35.66951 -33.97648 -32.09904 -31.98271 -31.33635 -27.91818 -27.37063 -27.14735 -24.67918 -23.45194 -23.10889 -22.85687 -21.08272 -19.77094 -19.42768 -18.78272 -17.72895 -17.41271 -17.18326 -16.90780 -16.26032 -16.08619 -15.84665 -15.64044 -15.14877 -14.98472 -14.83825 -14.47390 -14.41642 -14.19229 -13.82484 -13.71613 -13.56781 -13.16806 -13.06652 -12.99516 -12.91917 -12.87979 -12.78214 -12.58591 -12.48037 -12.32111 -12.16427 -12.01075 -11.81888 -11.65324 -11.55152 -11.30868 -10.98981 -10.94342 -10.31769 -9.90952 -9.71536 -9.40377 -8.78521 -6.55769 -0.18531 0.57402 0.99962 1.36204 1.44924 1.49716 2.14504 2.24993 2.64094 2.88767 3.03872 3.52028 3.62694 3.76214 3.97993 4.07209 4.16996 4.33277 4.33382 4.45418 4.49671 4.52598 4.56700 4.61125 4.65319 4.72093 4.73812 4.84143 4.84862 4.91060 4.99573 5.01198 5.11388 5.20010 5.26529 5.32666 5.38841 5.47952 5.57681 5.63572 5.71921 5.83010 5.90293 6.02652 6.17829 6.42994 6.55107 6.73821 6.87259 8.17685 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009068 B = 0.007535 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.963317 B = 3715.346658 C = 4868.167004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.107 3.893 4 H 0.082 0.918 5 C -0.164 4.164 6 C 0.126 3.874 7 N -0.990 5.990 8 S 2.716 3.284 9 O -1.006 7.006 10 O -0.997 6.997 11 C -0.797 4.797 12 C -0.015 4.015 13 C -0.254 4.254 14 C -0.077 4.077 15 C -0.186 4.186 16 C 0.170 3.830 17 C -0.488 4.488 18 H 0.109 0.891 19 C 0.065 3.935 20 N -0.788 5.788 21 Si 0.941 3.059 22 H -0.266 1.266 23 H -0.263 1.263 24 H -0.239 1.239 25 C 0.131 3.869 26 C -0.101 4.101 27 H 0.048 0.952 28 C -0.134 4.134 29 H 0.041 0.959 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.294 0.706 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.092 0.088 7.360 11.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C 0.050 3.950 4 H 0.100 0.900 5 C -0.203 4.203 6 C 0.001 3.999 7 N -0.827 5.827 8 S 2.814 3.186 9 O -0.997 6.997 10 O -0.988 6.988 11 C -0.891 4.891 12 C -0.035 4.035 13 C -0.274 4.274 14 C -0.096 4.096 15 C -0.206 4.206 16 C 0.166 3.834 17 C -0.515 4.515 18 H 0.127 0.873 19 C -0.156 4.156 20 N -0.411 5.411 21 Si 0.761 3.239 22 H -0.190 1.190 23 H -0.187 1.187 24 H -0.162 1.162 25 C 0.006 3.994 26 C -0.121 4.121 27 H 0.067 0.933 28 C -0.192 4.192 29 H 0.059 0.941 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.137 0.863 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.119 0.881 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.850 0.595 7.307 11.492 hybrid contribution -0.112 -0.871 -1.177 1.468 sum -8.961 -0.276 6.130 10.861 Atomic orbital electron populations 1.22920 0.80154 1.03316 1.00626 1.87919 1.20904 1.28524 1.95052 1.22013 0.94203 0.84292 0.94533 0.90024 1.22577 1.01670 0.97747 0.98317 1.21617 0.85419 0.96986 0.95902 1.57471 1.23407 1.79941 1.21908 1.00518 0.72257 0.73929 0.71849 1.93411 1.72608 1.78730 1.54930 1.93415 1.83906 1.70420 1.51028 1.30176 1.15712 1.29812 1.13366 1.20542 0.92334 0.94703 0.95914 1.20833 1.03410 1.00364 1.02841 1.21197 0.95472 0.97804 0.95136 1.21468 0.95850 1.01056 1.02192 1.17250 0.90621 0.88948 0.86615 1.20501 1.04653 0.97405 1.28967 0.87349 1.26434 0.99450 0.93875 0.95808 1.69836 1.35322 1.02203 1.33716 0.85842 0.78830 0.79932 0.79300 1.19026 1.18692 1.16216 1.21585 1.02607 0.93935 0.81305 1.21508 0.95983 0.96758 0.97855 0.93331 1.21661 1.02303 1.01728 0.93489 0.94060 0.89138 0.92437 0.90784 0.90799 0.88970 0.89865 0.86261 0.85837 0.86371 0.87403 0.89511 0.89899 0.88117 0.90647 0.92321 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.82 113.37 1.23 1.77 16 2 O -0.40 -12.12 9.57 -148.98 -1.43 -13.54 16 3 C 0.11 3.07 2.02 30.62 0.06 3.13 16 4 H 0.08 1.86 7.78 -2.39 -0.02 1.84 16 5 C -0.16 -5.48 5.59 30.82 0.17 -5.30 16 6 C 0.13 4.22 5.56 86.51 0.48 4.70 16 7 N -0.99 -35.95 3.28 -512.30 -1.68 -37.63 16 8 S 2.72 119.67 5.09 -56.49 -0.29 119.38 16 9 O -1.01 -45.30 15.93 -128.00 -2.04 -47.34 16 10 O -1.00 -48.23 14.29 -128.00 -1.83 -50.06 16 11 C -0.80 -38.50 5.97 22.73 0.14 -38.36 16 12 C -0.02 -0.69 9.54 22.22 0.21 -0.48 16 13 C -0.25 -10.98 10.05 22.46 0.23 -10.76 16 14 C -0.08 -3.47 10.02 22.22 0.22 -3.25 16 15 C -0.19 -9.31 8.66 22.73 0.20 -9.11 16 16 C 0.17 8.70 5.52 -21.29 -0.12 8.58 16 17 C -0.49 -23.92 6.00 23.46 0.14 -23.78 16 18 H 0.11 5.39 3.83 -2.91 -0.01 5.37 16 19 C 0.07 2.95 3.76 85.25 0.32 3.27 16 20 N -0.79 -36.79 11.13 21.83 0.24 -36.55 16 21 Si 0.94 34.89 29.59 68.60 2.03 36.92 16 22 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 23 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 24 H -0.24 -8.22 7.11 99.48 0.71 -7.52 16 25 C 0.13 3.93 5.64 86.36 0.49 4.42 16 26 C -0.10 -3.04 2.62 -10.72 -0.03 -3.07 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 28 C -0.13 -3.14 9.08 71.98 0.65 -2.48 16 29 H 0.04 0.83 7.84 -2.38 -0.02 0.81 16 30 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.06 0.95 8.08 -2.39 -0.02 0.94 16 32 H 0.07 3.09 5.72 -2.39 -0.01 3.07 16 33 H 0.07 2.20 7.84 -2.38 -0.02 2.18 16 34 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.08 3.17 4.94 -2.39 -0.01 3.16 16 36 H 0.12 4.98 7.32 -2.91 -0.02 4.96 16 37 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 38 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 39 H 0.11 5.50 6.43 -2.91 -0.02 5.48 16 40 H 0.29 12.55 8.30 -92.71 -0.77 11.78 16 41 H 0.08 2.57 7.33 -2.39 -0.02 2.56 16 42 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.06 1.44 7.56 -2.38 -0.02 1.42 16 45 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -61.86 358.99 0.40 -61.46 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: 1.00 Total: 38.09 kcal Atomic # 6 Polarization: -75.11 SS G_CDS: 4.39 Total: -70.72 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -1.44 Total: -74.19 kcal Atomic # 8 Polarization: -105.65 SS G_CDS: -5.29 Total: -110.95 kcal Atomic # 14 Polarization: 34.89 SS G_CDS: 2.03 Total: 36.92 kcal Atomic # 16 Polarization: 119.67 SS G_CDS: -0.29 Total: 119.38 kcal Total: -61.86 0.40 -61.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601429305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.738 kcal (2) G-P(sol) polarization free energy of solvation -61.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds