Wall clock time and date at job start Tue Mar 31 2020 23:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.55370 * 2 1 4 4 C 1.54997 * 110.75879 * 237.02729 * 2 1 3 5 5 C 1.54802 * 102.09332 * 278.45986 * 4 2 1 6 6 H 1.08998 * 110.60336 * 97.84774 * 5 4 2 7 7 C 1.52999 * 110.48737 * 220.43914 * 5 4 2 8 8 N 1.46497 * 109.47211 * 292.34738 * 7 5 4 9 9 S 1.65599 * 119.99799 * 163.91301 * 8 7 5 10 10 O 1.42102 * 106.40800 * 313.17399 * 9 8 7 11 11 O 1.42106 * 106.40298 * 180.25468 * 9 8 7 12 12 C 1.76205 * 107.21892 * 66.71604 * 9 8 7 13 13 C 1.37639 * 120.12755 * 111.94399 * 12 9 8 14 14 C 1.38609 * 120.24693 * 179.97438 * 13 12 9 15 15 C 1.38659 * 120.50073 * 0.02562 * 14 13 12 16 16 C 1.37592 * 120.25095 * 359.97438 * 15 14 13 17 17 C 1.40700 * 120.12744 * 291.92434 * 12 9 8 18 18 C 1.41402 * 120.24356 * 359.97438 * 17 12 9 19 19 H 1.07997 * 119.99828 * 332.29342 * 18 17 12 20 20 C 1.39944 * 119.99993 * 152.29438 * 18 17 12 21 21 N 1.30825 * 119.99802 * 161.41040 * 20 18 17 22 22 Si 1.86796 * 120.00076 * 341.41185 * 20 18 17 23 23 H 1.48502 * 109.47083 * 93.35425 * 22 20 18 24 24 H 1.48502 * 109.47048 * 213.35878 * 22 20 18 25 25 H 1.48507 * 109.47082 * 333.35362 * 22 20 18 26 26 C 1.54105 * 104.18912 * 339.11559 * 5 4 2 27 27 H 1.08999 * 109.87861 * 117.39151 * 26 5 4 28 28 C 1.53001 * 109.88025 * 238.40054 * 26 5 4 29 29 O 1.43742 * 107.29147 * 357.97197 * 26 5 4 30 30 H 1.08998 * 109.47228 * 298.57541 * 1 2 3 31 31 H 1.08998 * 109.46725 * 58.57726 * 1 2 3 32 32 H 1.08997 * 109.46911 * 178.57304 * 1 2 3 33 33 H 1.08999 * 110.90977 * 160.25286 * 4 2 1 34 34 H 1.09005 * 110.90315 * 36.65537 * 4 2 1 35 35 H 1.09002 * 109.47301 * 172.34950 * 7 5 4 36 36 H 1.08998 * 109.46858 * 52.35277 * 7 5 4 37 37 H 0.96993 * 120.00221 * 343.92449 * 8 7 5 38 38 H 1.07994 * 119.87563 * 0.26164 * 13 12 9 39 39 H 1.07995 * 119.75046 * 179.97438 * 14 13 12 40 40 H 1.08002 * 119.87601 * 179.97438 * 15 14 13 41 41 H 1.07995 * 120.13166 * 180.02562 * 16 15 14 42 42 H 0.97002 * 119.99873 * 179.97438 * 21 20 18 43 43 H 1.08998 * 109.47480 * 60.64473 * 28 26 5 44 44 H 1.08997 * 109.46902 * 180.65327 * 28 26 5 45 45 H 1.09004 * 109.46579 * 300.64875 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0793 -0.7888 -1.2159 5 6 1.9861 -2.2528 -0.7217 6 1 1.0804 -2.7280 -1.0987 7 6 3.2231 -3.0433 -1.1526 8 7 3.2222 -3.1957 -2.6097 9 16 4.6079 -3.6472 -3.3958 10 8 5.6498 -2.8358 -2.8709 11 8 4.2857 -3.6999 -4.7788 12 6 4.9703 -5.3006 -2.9060 13 6 4.8713 -6.3282 -3.8163 14 6 5.1563 -7.6297 -3.4339 15 6 5.5432 -7.9121 -2.1327 16 6 5.6490 -6.9006 -1.2059 17 6 5.3625 -5.5754 -1.5830 18 6 5.4686 -4.5276 -0.6394 19 1 5.6946 -3.5245 -0.9696 20 6 5.2809 -4.7905 0.7222 21 7 5.7224 -3.9459 1.6184 22 14 4.4000 -6.3474 1.2601 23 1 5.3978 -7.4166 1.5185 24 1 3.6310 -6.0774 2.5014 25 1 3.4709 -6.7861 0.1878 26 6 1.9319 -2.1306 0.8135 27 1 0.9855 -2.5248 1.1836 28 6 3.0965 -2.9016 1.4383 29 8 2.0384 -0.7336 1.1349 30 1 -0.3633 0.4915 0.9025 31 1 -0.3633 0.5358 -0.8770 32 1 -0.3633 -1.0273 -0.0256 33 1 3.1133 -0.5133 -1.4233 34 1 1.4533 -0.6343 -2.0948 35 1 3.2067 -4.0275 -0.6844 36 1 4.1215 -2.5090 -0.8437 37 1 2.4100 -3.0319 -3.1139 38 1 4.5749 -6.1191 -4.8335 39 1 5.0755 -8.4299 -4.1546 40 1 5.7625 -8.9299 -1.8455 41 1 5.9509 -7.1227 -0.1931 42 1 5.5920 -4.1279 2.5622 43 1 4.0395 -2.4831 1.0867 44 1 3.0451 -2.8203 2.5240 45 1 3.0343 -3.9507 1.1491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601440178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:41 Heat of formation + Delta-G solvation = -101.641931 kcal Electronic energy + Delta-G solvation = -29765.043495 eV Core-core repulsion = 25874.186304 eV Total energy + Delta-G solvation = -3890.857191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.91473 -37.94226 -36.42638 -35.37522 -34.90808 -33.99756 -32.28963 -31.60536 -30.74076 -30.12773 -28.28606 -25.70072 -25.08582 -23.99466 -22.12209 -21.23236 -20.81814 -19.55633 -18.57634 -17.76302 -17.20747 -16.48030 -16.11454 -15.76473 -15.43944 -15.12542 -15.09239 -14.43227 -14.29270 -14.20140 -13.60671 -13.51989 -13.03986 -12.80397 -12.64459 -12.57517 -12.25145 -12.12104 -11.88422 -11.80577 -11.63069 -11.42433 -11.36189 -11.24255 -11.20966 -10.94225 -10.84104 -10.75014 -10.58379 -10.46336 -10.40354 -10.12895 -10.00833 -9.53059 -9.39368 -9.23695 -8.66055 -8.27061 -7.87096 -7.28874 -4.90772 1.46434 2.05237 2.48454 2.86386 2.95961 3.05452 3.66778 3.90614 4.03173 4.17599 4.61443 4.68132 4.90375 4.95523 5.07894 5.14004 5.27483 5.32951 5.45024 5.53375 5.67888 5.71364 5.80973 5.81683 5.88215 5.93467 5.98730 6.06345 6.17459 6.22538 6.24834 6.29259 6.36136 6.37836 6.55221 6.59340 6.75225 6.89518 6.97675 7.07217 7.21568 7.22800 7.38986 7.53369 7.63218 7.79454 8.06972 8.28307 8.46670 9.66588 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012201 B = 0.006101 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.309952 B = 4588.464524 C = 6102.134949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.069 3.931 3 H 0.098 0.902 4 C -0.145 4.145 5 C -0.129 4.129 6 H 0.082 0.918 7 C 0.132 3.868 8 N -1.122 6.122 9 S 2.706 3.294 10 O -0.967 6.967 11 O -0.998 6.998 12 C -0.773 4.773 13 C 0.020 3.980 14 C -0.262 4.262 15 C -0.043 4.043 16 C -0.239 4.239 17 C 0.160 3.840 18 C -0.460 4.460 19 H 0.137 0.863 20 C 0.092 3.908 21 N -0.759 5.759 22 Si 0.893 3.107 23 H -0.267 1.267 24 H -0.281 1.281 25 H -0.240 1.240 26 C 0.082 3.918 27 H 0.060 0.940 28 C -0.161 4.161 29 O -0.366 6.366 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.404 0.596 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.294 0.706 43 H 0.099 0.901 44 H 0.051 0.949 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.389 2.520 0.213 9.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.011 3.989 3 H 0.116 0.884 4 C -0.182 4.182 5 C -0.149 4.149 6 H 0.101 0.899 7 C 0.006 3.994 8 N -0.879 5.879 9 S 2.803 3.197 10 O -0.957 6.957 11 O -0.989 6.989 12 C -0.867 4.867 13 C 0.000 4.000 14 C -0.282 4.282 15 C -0.062 4.062 16 C -0.259 4.259 17 C 0.155 3.845 18 C -0.486 4.486 19 H 0.154 0.846 20 C -0.133 4.133 21 N -0.379 5.379 22 Si 0.719 3.281 23 H -0.193 1.193 24 H -0.208 1.208 25 H -0.163 1.163 26 C 0.023 3.977 27 H 0.078 0.922 28 C -0.218 4.218 29 O -0.285 6.285 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.236 0.764 38 H 0.131 0.869 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.105 0.895 43 H 0.118 0.882 44 H 0.070 0.930 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.600 3.301 0.224 9.214 hybrid contribution -0.893 -1.635 0.434 1.913 sum -9.493 1.666 0.659 9.661 Atomic orbital electron populations 1.22237 0.96016 1.02461 1.02114 1.23103 0.93285 0.96730 0.85787 0.88429 1.23260 1.02859 0.94204 0.97912 1.22866 0.99782 0.96489 0.95765 0.89942 1.22021 0.97927 1.01032 0.78377 1.55578 1.29238 1.86553 1.16490 1.00907 0.72644 0.74674 0.71499 1.93505 1.54585 1.67852 1.79761 1.93457 1.84629 1.88541 1.32302 1.29855 1.31314 1.20914 1.04642 1.20375 0.90656 0.92319 0.96663 1.20489 1.15372 0.95859 0.96528 1.20830 0.94428 0.97234 0.93705 1.21230 1.11399 0.94149 0.99078 1.17073 0.85066 0.92336 0.90027 1.20585 1.38190 0.99341 0.90504 0.84571 1.26168 0.93204 0.97605 0.96320 1.69685 1.29692 1.35000 1.03549 0.86665 0.81050 0.81421 0.78989 1.19319 1.20840 1.16340 1.22710 0.98947 0.82816 0.93205 0.92163 1.22437 0.99453 0.99413 1.00518 1.88938 1.84036 1.16840 1.38730 0.92102 0.91766 0.92288 0.89682 0.90477 0.89980 0.88410 0.76362 0.86933 0.88189 0.88388 0.87619 0.89495 0.88247 0.92958 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 9.41 37.16 0.35 -1.39 16 2 C 0.07 0.86 4.28 -25.68 -0.11 0.75 16 3 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.14 -1.88 6.03 -24.73 -0.15 -2.03 16 5 C -0.13 -1.84 2.71 -89.09 -0.24 -2.08 16 6 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 7 C 0.13 2.30 2.53 -4.04 -0.01 2.29 16 8 N -1.12 -19.08 5.82 -10.61 -0.06 -19.14 16 9 S 2.71 56.41 5.44 -107.50 -0.58 55.82 16 10 O -0.97 -23.00 14.94 -57.17 -0.85 -23.86 16 11 O -1.00 -21.67 16.97 -57.17 -0.97 -22.64 16 12 C -0.77 -17.33 5.97 -38.87 -0.23 -17.56 16 13 C 0.02 0.42 9.53 -39.66 -0.38 0.04 16 14 C -0.26 -5.28 10.05 -39.29 -0.39 -5.68 16 15 C -0.04 -0.89 10.02 -39.66 -0.40 -1.29 16 16 C -0.24 -5.39 7.22 -38.88 -0.28 -5.67 16 17 C 0.16 3.76 5.13 -106.82 -0.55 3.21 16 18 C -0.46 -10.83 5.36 -37.74 -0.20 -11.03 16 19 H 0.14 3.44 4.13 -52.49 -0.22 3.22 16 20 C 0.09 2.02 3.04 -17.34 -0.05 1.97 16 21 N -0.76 -16.69 11.68 55.55 0.65 -16.04 16 22 Si 0.89 17.92 22.46 -169.99 -3.82 14.10 16 23 H -0.27 -5.37 6.58 56.52 0.37 -5.00 16 24 H -0.28 -5.33 7.11 56.52 0.40 -4.92 16 25 H -0.24 -4.95 6.91 56.52 0.39 -4.56 16 26 C 0.08 1.23 3.45 -26.15 -0.09 1.14 16 27 H 0.06 0.82 8.05 -51.93 -0.42 0.41 16 28 C -0.16 -2.78 6.51 37.16 0.24 -2.54 16 29 O -0.37 -5.75 10.95 -35.23 -0.39 -6.13 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.61 7.30 -51.93 -0.38 0.23 16 33 H 0.08 1.23 7.81 -51.93 -0.41 0.83 16 34 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 35 H 0.08 1.53 4.57 -51.93 -0.24 1.29 16 36 H 0.10 1.95 4.88 -51.93 -0.25 1.69 16 37 H 0.40 5.59 8.66 -34.47 -0.30 5.30 16 38 H 0.11 2.18 7.32 -52.49 -0.38 1.80 16 39 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 41 H 0.11 2.32 4.42 -52.49 -0.23 2.09 16 42 H 0.29 5.87 8.30 -40.82 -0.34 5.53 16 43 H 0.10 1.94 5.30 -51.93 -0.28 1.67 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.07 1.17 3.65 -51.93 -0.19 0.98 16 LS Contribution 339.39 15.07 5.11 5.11 Total: -1.00 -27.80 339.39 -9.25 -37.05 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -5.84 Total: 15.57 kcal Atomic # 6 Polarization: -37.36 SS G_CDS: -2.50 Total: -39.85 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.59 Total: -35.18 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -2.21 Total: -52.63 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -3.82 Total: 14.10 kcal Atomic # 16 Polarization: 56.41 SS G_CDS: -0.58 Total: 55.82 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.80 -9.25 -37.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601440178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.592 kcal (2) G-P(sol) polarization free energy of solvation -27.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds