Wall clock time and date at job start Tue Mar 31 2020 23:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.55370 * 2 1 4 4 C 1.54997 * 110.75879 * 237.02729 * 2 1 3 5 5 C 1.54802 * 102.09332 * 278.45986 * 4 2 1 6 6 H 1.08998 * 110.60336 * 97.84774 * 5 4 2 7 7 C 1.52999 * 110.48737 * 220.43914 * 5 4 2 8 8 N 1.46497 * 109.47211 * 292.34738 * 7 5 4 9 9 S 1.65599 * 119.99799 * 163.91301 * 8 7 5 10 10 O 1.42102 * 106.40800 * 313.17399 * 9 8 7 11 11 O 1.42106 * 106.40298 * 180.25468 * 9 8 7 12 12 C 1.76205 * 107.21892 * 66.71604 * 9 8 7 13 13 C 1.37639 * 120.12755 * 111.94399 * 12 9 8 14 14 C 1.38609 * 120.24693 * 179.97438 * 13 12 9 15 15 C 1.38659 * 120.50073 * 0.02562 * 14 13 12 16 16 C 1.37592 * 120.25095 * 359.97438 * 15 14 13 17 17 C 1.40700 * 120.12744 * 291.92434 * 12 9 8 18 18 C 1.41402 * 120.24356 * 359.97438 * 17 12 9 19 19 H 1.07997 * 119.99828 * 332.29342 * 18 17 12 20 20 C 1.39944 * 119.99993 * 152.29438 * 18 17 12 21 21 N 1.30825 * 119.99802 * 161.41040 * 20 18 17 22 22 Si 1.86796 * 120.00076 * 341.41185 * 20 18 17 23 23 H 1.48502 * 109.47083 * 93.35425 * 22 20 18 24 24 H 1.48502 * 109.47048 * 213.35878 * 22 20 18 25 25 H 1.48507 * 109.47082 * 333.35362 * 22 20 18 26 26 C 1.54105 * 104.18912 * 339.11559 * 5 4 2 27 27 H 1.08999 * 109.87861 * 117.39151 * 26 5 4 28 28 C 1.53001 * 109.88025 * 238.40054 * 26 5 4 29 29 O 1.43742 * 107.29147 * 357.97197 * 26 5 4 30 30 H 1.08998 * 109.47228 * 298.57541 * 1 2 3 31 31 H 1.08998 * 109.46725 * 58.57726 * 1 2 3 32 32 H 1.08997 * 109.46911 * 178.57304 * 1 2 3 33 33 H 1.08999 * 110.90977 * 160.25286 * 4 2 1 34 34 H 1.09005 * 110.90315 * 36.65537 * 4 2 1 35 35 H 1.09002 * 109.47301 * 172.34950 * 7 5 4 36 36 H 1.08998 * 109.46858 * 52.35277 * 7 5 4 37 37 H 0.96993 * 120.00221 * 343.92449 * 8 7 5 38 38 H 1.07994 * 119.87563 * 0.26164 * 13 12 9 39 39 H 1.07995 * 119.75046 * 179.97438 * 14 13 12 40 40 H 1.08002 * 119.87601 * 179.97438 * 15 14 13 41 41 H 1.07995 * 120.13166 * 180.02562 * 16 15 14 42 42 H 0.97002 * 119.99873 * 179.97438 * 21 20 18 43 43 H 1.08998 * 109.47480 * 60.64473 * 28 26 5 44 44 H 1.08997 * 109.46902 * 180.65327 * 28 26 5 45 45 H 1.09004 * 109.46579 * 300.64875 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0793 -0.7888 -1.2159 5 6 1.9861 -2.2528 -0.7217 6 1 1.0804 -2.7280 -1.0987 7 6 3.2231 -3.0433 -1.1526 8 7 3.2222 -3.1957 -2.6097 9 16 4.6079 -3.6472 -3.3958 10 8 5.6498 -2.8358 -2.8709 11 8 4.2857 -3.6999 -4.7788 12 6 4.9703 -5.3006 -2.9060 13 6 4.8713 -6.3282 -3.8163 14 6 5.1563 -7.6297 -3.4339 15 6 5.5432 -7.9121 -2.1327 16 6 5.6490 -6.9006 -1.2059 17 6 5.3625 -5.5754 -1.5830 18 6 5.4686 -4.5276 -0.6394 19 1 5.6946 -3.5245 -0.9696 20 6 5.2809 -4.7905 0.7222 21 7 5.7224 -3.9459 1.6184 22 14 4.4000 -6.3474 1.2601 23 1 5.3978 -7.4166 1.5185 24 1 3.6310 -6.0774 2.5014 25 1 3.4709 -6.7861 0.1878 26 6 1.9319 -2.1306 0.8135 27 1 0.9855 -2.5248 1.1836 28 6 3.0965 -2.9016 1.4383 29 8 2.0384 -0.7336 1.1349 30 1 -0.3633 0.4915 0.9025 31 1 -0.3633 0.5358 -0.8770 32 1 -0.3633 -1.0273 -0.0256 33 1 3.1133 -0.5133 -1.4233 34 1 1.4533 -0.6343 -2.0948 35 1 3.2067 -4.0275 -0.6844 36 1 4.1215 -2.5090 -0.8437 37 1 2.4100 -3.0319 -3.1139 38 1 4.5749 -6.1191 -4.8335 39 1 5.0755 -8.4299 -4.1546 40 1 5.7625 -8.9299 -1.8455 41 1 5.9509 -7.1227 -0.1931 42 1 5.5920 -4.1279 2.5622 43 1 4.0395 -2.4831 1.0867 44 1 3.0451 -2.8203 2.5240 45 1 3.0343 -3.9507 1.1491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601440178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:40 Heat of formation + Delta-G solvation = -121.729002 kcal Electronic energy + Delta-G solvation = -29765.914535 eV Core-core repulsion = 25874.186304 eV Total energy + Delta-G solvation = -3891.728231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.05501 -39.59303 -38.14296 -36.81181 -36.65326 -35.62664 -33.41307 -32.88223 -32.38271 -31.77905 -29.34684 -27.32246 -26.37000 -25.25782 -23.77002 -22.90598 -21.83699 -20.84320 -20.17101 -19.45683 -18.79137 -18.05492 -17.41227 -17.11484 -16.94191 -16.55404 -16.23413 -16.00285 -15.80866 -15.59542 -15.15763 -15.06513 -14.59056 -14.08235 -14.05707 -13.78369 -13.73654 -13.37632 -13.30007 -13.11836 -13.02955 -12.94381 -12.91129 -12.87829 -12.71911 -12.40744 -12.34087 -12.27055 -12.04610 -11.68795 -11.59723 -11.51899 -11.38903 -11.16600 -10.96473 -10.48939 -10.15182 -9.92580 -9.55234 -8.96617 -6.64223 -0.17879 0.37880 0.81434 1.23932 1.35468 1.43914 2.04937 2.34981 2.51262 2.93902 2.96103 3.37705 3.55130 3.70324 3.78010 3.95364 4.16637 4.20710 4.23318 4.31722 4.42030 4.49090 4.52033 4.60420 4.64300 4.67327 4.71989 4.83191 4.86350 4.91825 4.94064 4.98926 5.12270 5.19179 5.24388 5.26025 5.33270 5.42250 5.42562 5.57941 5.58626 5.73228 5.87078 6.10857 6.12312 6.31460 6.36080 6.57727 6.73465 8.03739 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012201 B = 0.006101 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.309952 B = 4588.464524 C = 6102.134949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.064 3.936 3 H 0.105 0.895 4 C -0.144 4.144 5 C -0.125 4.125 6 H 0.113 0.887 7 C 0.138 3.862 8 N -1.105 6.105 9 S 2.722 3.278 10 O -1.003 7.003 11 O -1.007 7.007 12 C -0.791 4.791 13 C 0.006 3.994 14 C -0.258 4.258 15 C -0.042 4.042 16 C -0.265 4.265 17 C 0.143 3.857 18 C -0.477 4.477 19 H 0.110 0.890 20 C 0.078 3.922 21 N -0.780 5.780 22 Si 0.927 3.073 23 H -0.266 1.266 24 H -0.264 1.264 25 H -0.247 1.247 26 C 0.083 3.917 27 H 0.083 0.917 28 C -0.158 4.158 29 O -0.391 6.391 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.422 0.578 38 H 0.128 0.872 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.106 0.894 42 H 0.302 0.698 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.747 1.403 -0.411 11.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.007 3.993 3 H 0.122 0.878 4 C -0.182 4.182 5 C -0.145 4.145 6 H 0.131 0.869 7 C 0.012 3.988 8 N -0.866 5.866 9 S 2.818 3.182 10 O -0.993 6.993 11 O -0.998 6.998 12 C -0.884 4.884 13 C -0.014 4.014 14 C -0.278 4.278 15 C -0.061 4.061 16 C -0.284 4.284 17 C 0.138 3.862 18 C -0.503 4.503 19 H 0.127 0.873 20 C -0.145 4.145 21 N -0.402 5.402 22 Si 0.751 3.249 23 H -0.193 1.193 24 H -0.190 1.190 25 H -0.170 1.170 26 C 0.025 3.975 27 H 0.101 0.899 28 C -0.215 4.215 29 O -0.311 6.311 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.124 0.876 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.257 0.743 38 H 0.146 0.854 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.962 2.193 -0.411 11.187 hybrid contribution -0.113 -1.281 0.551 1.399 sum -11.075 0.912 0.140 11.113 Atomic orbital electron populations 1.22189 0.93626 1.03015 1.03297 1.23330 0.95105 0.96559 0.84307 0.87761 1.23271 1.02187 0.93313 0.99402 1.22878 0.99126 0.97023 0.95452 0.86917 1.21818 0.98437 1.00536 0.77984 1.55144 1.28990 1.85946 1.16485 1.00274 0.72762 0.74103 0.71096 1.93466 1.56691 1.68785 1.80330 1.93430 1.84843 1.88590 1.32929 1.30082 1.31806 1.21854 1.04706 1.20711 0.90760 0.92713 0.97214 1.20942 1.13437 0.96333 0.97073 1.21254 0.92944 0.98449 0.93434 1.21380 1.12794 0.94391 0.99855 1.17265 0.85475 0.92931 0.90491 1.20422 1.40025 0.98365 0.91525 0.87271 1.26470 0.93190 0.99097 0.95754 1.69691 1.30417 1.35940 1.04125 0.86133 0.80372 0.79280 0.79093 1.19254 1.19010 1.17031 1.22715 0.98681 0.82654 0.93485 0.89928 1.22322 0.99262 0.99335 1.00545 1.88909 1.84761 1.17188 1.40236 0.91881 0.89609 0.92065 0.92099 0.87586 0.91216 0.91578 0.74257 0.85379 0.84740 0.84939 0.87669 0.88656 0.91160 0.92990 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.41 71.98 0.68 -2.14 16 2 C 0.06 1.50 4.28 31.28 0.13 1.63 16 3 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 4 C -0.14 -3.55 6.03 31.89 0.19 -3.35 16 5 C -0.12 -3.40 2.71 -9.80 -0.03 -3.42 16 6 H 0.11 2.40 8.14 -2.39 -0.02 2.39 16 7 C 0.14 4.88 2.53 86.38 0.22 5.10 16 8 N -1.10 -37.38 5.82 -187.50 -1.09 -38.48 16 9 S 2.72 115.01 5.44 -56.49 -0.31 114.70 16 10 O -1.00 -49.89 14.94 -128.00 -1.91 -51.80 16 11 O -1.01 -43.21 16.97 -128.00 -2.17 -45.39 16 12 C -0.79 -35.50 5.97 22.73 0.14 -35.37 16 13 C 0.01 0.23 9.53 22.22 0.21 0.44 16 14 C -0.26 -9.66 10.05 22.46 0.23 -9.43 16 15 C -0.04 -1.64 10.02 22.22 0.22 -1.42 16 16 C -0.26 -11.77 7.22 22.73 0.16 -11.61 16 17 C 0.14 6.81 5.13 -21.29 -0.11 6.70 16 18 C -0.48 -23.34 5.36 23.46 0.13 -23.21 16 19 H 0.11 5.90 4.13 -2.91 -0.01 5.89 16 20 C 0.08 3.54 3.04 85.26 0.26 3.80 16 21 N -0.78 -35.64 11.68 21.83 0.25 -35.38 16 22 Si 0.93 36.52 22.46 68.60 1.54 38.06 16 23 H -0.27 -10.37 6.58 99.48 0.65 -9.72 16 24 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 25 H -0.25 -9.92 6.91 99.48 0.69 -9.23 16 26 C 0.08 2.43 3.45 30.97 0.11 2.54 16 27 H 0.08 2.07 8.05 -2.39 -0.02 2.05 16 28 C -0.16 -5.54 6.51 71.98 0.47 -5.07 16 29 O -0.39 -12.04 10.95 -148.98 -1.63 -13.67 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.04 7.30 -2.39 -0.02 1.02 16 33 H 0.06 1.79 7.81 -2.39 -0.02 1.77 16 34 H 0.11 1.97 8.05 -2.38 -0.02 1.95 16 35 H 0.07 2.66 4.57 -2.39 -0.01 2.65 16 36 H 0.07 2.81 4.88 -2.39 -0.01 2.79 16 37 H 0.42 11.03 8.66 -96.75 -0.84 10.19 16 38 H 0.13 4.73 7.32 -2.91 -0.02 4.71 16 39 H 0.13 4.07 8.06 -2.91 -0.02 4.04 16 40 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16 41 H 0.11 4.59 4.42 -2.91 -0.01 4.58 16 42 H 0.30 12.41 8.30 -92.71 -0.77 11.64 16 43 H 0.07 2.90 5.30 -2.39 -0.01 2.89 16 44 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.06 2.19 3.65 -2.38 -0.01 2.19 16 Total: -1.00 -61.41 339.39 -2.18 -63.59 By element: Atomic # 1 Polarization: 43.04 SS G_CDS: 0.13 Total: 43.17 kcal Atomic # 6 Polarization: -77.82 SS G_CDS: 3.01 Total: -74.81 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -0.84 Total: -73.86 kcal Atomic # 8 Polarization: -105.14 SS G_CDS: -5.72 Total: -110.86 kcal Atomic # 14 Polarization: 36.52 SS G_CDS: 1.54 Total: 38.06 kcal Atomic # 16 Polarization: 115.01 SS G_CDS: -0.31 Total: 114.70 kcal Total: -61.41 -2.18 -63.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601440178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.137 kcal (2) G-P(sol) polarization free energy of solvation -61.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds