Wall clock time and date at job start Tue Mar 31 2020 23:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.41806 * 2 1 4 4 C 1.54482 * 110.36703 * 237.69332 * 2 1 3 5 5 C 1.54512 * 104.05948 * 217.18810 * 4 2 1 6 6 H 1.09003 * 110.50675 * 118.64522 * 5 4 2 7 7 C 1.52992 * 110.62903 * 241.29800 * 5 4 2 8 8 N 1.46493 * 109.47374 * 289.71242 * 7 5 4 9 9 S 1.65602 * 120.00256 * 165.97944 * 8 7 5 10 10 O 1.42100 * 106.40276 * 176.35335 * 9 8 7 11 11 O 1.42093 * 106.40296 * 309.27722 * 9 8 7 12 12 C 1.76211 * 107.21696 * 62.81428 * 9 8 7 13 13 C 1.37636 * 120.12965 * 245.81499 * 12 9 8 14 14 C 1.38605 * 120.25032 * 179.97438 * 13 12 9 15 15 C 1.38660 * 120.50113 * 0.02562 * 14 13 12 16 16 C 1.37593 * 120.24815 * 0.02562 * 15 14 13 17 17 C 1.40695 * 120.12474 * 65.53842 * 12 9 8 18 18 C 1.41396 * 120.24732 * 0.02562 * 17 12 9 19 19 H 1.07998 * 119.99902 * 331.42361 * 18 17 12 20 20 C 1.39945 * 120.00209 * 151.42203 * 18 17 12 21 21 N 1.30818 * 120.00250 * 348.42705 * 20 18 17 22 22 Si 1.86799 * 120.00000 * 168.42158 * 20 18 17 23 23 H 1.48504 * 109.46943 * 60.00303 * 22 20 18 24 24 H 1.48498 * 109.47316 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47432 * 300.00327 * 22 20 18 26 26 C 1.54482 * 104.06383 * 0.02562 * 5 4 2 27 27 H 1.09001 * 110.46529 * 265.09682 * 26 5 4 28 28 C 1.53003 * 110.37365 * 142.80770 * 26 5 4 29 29 O 1.44420 * 110.37052 * 122.31217 * 2 1 3 30 30 H 1.09007 * 109.46725 * 299.14524 * 1 2 3 31 31 H 1.08998 * 109.47090 * 59.13533 * 1 2 3 32 32 H 1.08991 * 109.47442 * 179.14381 * 1 2 3 33 33 H 1.08993 * 110.51412 * 335.83745 * 4 2 1 34 34 H 1.08997 * 110.50802 * 98.54894 * 4 2 1 35 35 H 1.08999 * 109.47381 * 49.71520 * 7 5 4 36 36 H 1.09001 * 109.47210 * 169.71178 * 7 5 4 37 37 H 0.96998 * 120.00120 * 345.97717 * 8 7 5 38 38 H 1.07999 * 119.87098 * 0.02562 * 13 12 9 39 39 H 1.08002 * 119.75099 * 180.02562 * 14 13 12 40 40 H 1.07998 * 119.87589 * 180.02562 * 15 14 13 41 41 H 1.08000 * 120.13043 * 179.97438 * 16 15 14 42 42 H 0.97003 * 120.00401 * 179.97438 * 21 20 18 43 43 H 1.09005 * 109.46791 * 303.16414 * 28 26 5 44 44 H 1.08994 * 109.46772 * 63.16315 * 28 26 5 45 45 H 1.08999 * 109.46978 * 183.16541 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0677 -0.7740 -1.2240 5 6 3.3177 -1.5057 -0.6860 6 1 3.1954 -2.5853 -0.7734 7 6 4.5729 -1.0477 -1.4314 8 7 4.5389 -1.5578 -2.8043 9 16 5.5760 -0.9455 -3.9410 10 8 5.3576 -1.6949 -5.1284 11 8 5.4491 0.4684 -3.8798 12 6 7.2134 -1.3215 -3.4094 13 6 8.0744 -0.3080 -3.0546 14 6 9.3628 -0.6009 -2.6356 15 6 9.7995 -1.9152 -2.5693 16 6 8.9564 -2.9443 -2.9202 17 6 7.6438 -2.6592 -3.3405 18 6 6.7664 -3.7090 -3.6975 19 1 5.7002 -3.5857 -3.5781 20 6 7.2797 -4.9077 -4.2055 21 7 8.5358 -4.9821 -4.5630 22 14 6.1710 -6.4018 -4.3730 23 1 5.0420 -6.0809 -5.2827 24 1 6.9500 -7.5362 -4.9312 25 1 5.6398 -6.7763 -3.0377 26 6 3.3870 -1.0877 0.7995 27 1 4.0524 -0.2334 0.9244 28 6 3.8598 -2.2602 1.6613 29 8 2.0328 -0.7237 1.1442 30 1 -0.3633 0.5005 0.8976 31 1 -0.3633 0.5272 -0.8821 32 1 -0.3634 -1.0274 -0.0154 33 1 1.3275 -1.4918 -1.5773 34 1 2.3429 -0.0838 -2.0215 35 1 4.6077 0.0416 -1.4493 36 1 5.4576 -1.4312 -0.9231 37 1 3.9091 -2.2542 -3.0475 38 1 7.7446 0.7193 -3.1021 39 1 10.0315 0.2007 -2.3587 40 1 10.8053 -2.1319 -2.2410 41 1 9.2987 -3.9673 -2.8682 42 1 8.8917 -5.8131 -4.9148 43 1 3.1935 -3.1104 1.5151 44 1 4.8730 -2.5386 1.3716 45 1 3.8496 -1.9669 2.7110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601440179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:45 Heat of formation + Delta-G solvation = -119.766831 kcal Electronic energy + Delta-G solvation = -28423.739057 eV Core-core repulsion = 24532.095912 eV Total energy + Delta-G solvation = -3891.643145 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.90661 -37.61994 -36.26809 -35.41597 -34.85660 -33.91557 -32.84212 -31.69831 -30.24786 -29.58033 -28.89073 -25.82336 -25.51314 -22.88404 -21.74046 -21.52909 -21.16574 -20.43023 -18.60817 -17.73243 -16.94003 -16.58077 -15.90748 -15.79119 -15.58415 -15.28740 -15.17146 -14.42574 -14.20826 -13.84433 -13.45357 -13.33610 -13.19218 -13.12708 -12.78209 -12.60499 -12.44751 -12.00015 -11.93528 -11.86175 -11.78221 -11.54673 -11.31640 -11.23874 -11.17427 -11.12840 -11.04183 -10.77889 -10.75231 -10.63237 -10.57388 -10.49353 -9.94182 -9.77347 -9.47943 -9.44302 -8.80571 -8.06361 -7.63204 -7.05348 -4.79106 1.50414 2.31329 2.71488 2.94079 2.96701 3.10013 3.73256 3.74788 3.88189 4.38159 4.51635 4.60340 4.66742 4.79675 4.88761 5.12294 5.20537 5.23883 5.27899 5.35035 5.45545 5.50071 5.60534 5.62379 5.70944 5.79290 5.88058 5.95085 6.01276 6.02833 6.03444 6.09787 6.19592 6.21413 6.34554 6.40524 6.74738 6.85189 6.92646 7.05908 7.27848 7.45583 7.50505 7.64715 7.78461 7.86420 8.25951 8.47170 8.62291 9.87338 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011183 B = 0.004296 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.261189 B = 6516.325230 C = 7186.981353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.069 3.931 3 H 0.069 0.931 4 C -0.150 4.150 5 C -0.123 4.123 6 H 0.093 0.907 7 C 0.134 3.866 8 N -1.121 6.121 9 S 2.700 3.300 10 O -0.964 6.964 11 O -0.999 6.999 12 C -0.776 4.776 13 C -0.003 4.003 14 C -0.250 4.250 15 C -0.077 4.077 16 C -0.158 4.158 17 C 0.187 3.813 18 C -0.445 4.445 19 H 0.087 0.913 20 C 0.081 3.919 21 N -0.776 5.776 22 Si 0.914 3.086 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.260 1.260 26 C 0.078 3.922 27 H 0.073 0.927 28 C -0.147 4.147 29 O -0.371 6.371 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.411 0.589 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.125 0.875 42 H 0.288 0.712 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.246 2.668 8.730 12.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.011 3.989 3 H 0.087 0.913 4 C -0.187 4.187 5 C -0.144 4.144 6 H 0.111 0.889 7 C 0.007 3.993 8 N -0.878 5.878 9 S 2.797 3.203 10 O -0.954 6.954 11 O -0.989 6.989 12 C -0.871 4.871 13 C -0.023 4.023 14 C -0.270 4.270 15 C -0.096 4.096 16 C -0.178 4.178 17 C 0.182 3.818 18 C -0.473 4.473 19 H 0.105 0.895 20 C -0.141 4.141 21 N -0.399 5.399 22 Si 0.737 3.263 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.184 1.184 26 C 0.019 3.981 27 H 0.091 0.909 28 C -0.204 4.204 29 O -0.291 6.291 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.244 0.756 38 H 0.125 0.875 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.143 0.857 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.350 3.067 8.093 12.741 hybrid contribution 0.222 -1.247 -0.018 1.266 sum -9.128 1.820 8.075 12.323 Atomic orbital electron populations 1.21795 0.93418 1.02761 1.02268 1.22977 0.95091 0.95576 0.85250 0.91325 1.23120 0.97177 0.99989 0.98453 1.22810 0.94877 1.01914 0.94757 0.88880 1.21131 0.97385 0.98779 0.82031 1.55664 1.54234 1.55253 1.22651 1.01093 0.74061 0.72330 0.72776 1.93550 1.85833 1.72193 1.43858 1.93443 1.87285 1.31092 1.87088 1.29844 1.22131 1.00617 1.34517 1.20248 0.93327 0.96378 0.92384 1.20491 0.96807 0.95753 1.13997 1.20907 0.97618 0.93472 0.97571 1.21526 0.94934 0.98595 1.02736 1.16995 0.92339 0.88928 0.83556 1.19812 0.95049 0.97533 1.34900 0.89547 1.25943 0.95538 1.00328 0.92252 1.69766 1.14504 1.28314 1.27364 0.86242 0.80884 0.79081 0.80125 1.18051 1.19885 1.18391 1.22944 0.84634 0.97589 0.92893 0.90925 1.21827 1.01797 0.97072 0.99728 1.89115 1.27199 1.74500 1.38283 0.92073 0.91187 0.91891 0.90486 0.89728 0.90760 0.91251 0.75586 0.87465 0.88751 0.88825 0.85691 0.90059 0.91853 0.90554 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.52 37.16 0.35 -0.94 16 2 C 0.07 0.74 3.92 -25.95 -0.10 0.64 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.15 -1.66 6.17 -25.16 -0.16 -1.82 16 5 C -0.12 -1.47 2.70 -89.05 -0.24 -1.71 16 6 H 0.09 1.08 7.86 -51.93 -0.41 0.67 16 7 C 0.13 1.90 5.28 -4.05 -0.02 1.87 16 8 N -1.12 -18.51 5.02 -10.62 -0.05 -18.56 16 9 S 2.70 57.45 4.96 -107.50 -0.53 56.92 16 10 O -0.96 -23.60 16.52 -57.17 -0.94 -24.54 16 11 O -1.00 -22.14 16.53 -57.17 -0.94 -23.08 16 12 C -0.78 -18.12 5.90 -38.87 -0.23 -18.35 16 13 C 0.00 -0.08 9.53 -39.67 -0.38 -0.46 16 14 C -0.25 -5.37 10.05 -39.29 -0.39 -5.76 16 15 C -0.08 -1.69 10.02 -39.66 -0.40 -2.09 16 16 C -0.16 -3.83 8.66 -38.87 -0.34 -4.17 16 17 C 0.19 4.64 5.55 -106.82 -0.59 4.05 16 18 C -0.44 -10.88 7.63 -37.74 -0.29 -11.16 16 19 H 0.09 1.96 5.83 -52.49 -0.31 1.65 16 20 C 0.08 1.90 5.24 -17.34 -0.09 1.81 16 21 N -0.78 -18.82 10.85 55.55 0.60 -18.22 16 22 Si 0.91 17.63 29.57 -169.99 -5.03 12.60 16 23 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 24 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 25 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 26 C 0.08 0.89 3.47 -25.95 -0.09 0.80 16 27 H 0.07 0.80 7.87 -51.93 -0.41 0.40 16 28 C -0.15 -1.54 9.53 37.16 0.35 -1.18 16 29 O -0.37 -4.64 11.04 -35.23 -0.39 -5.03 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.57 8.12 -51.93 -0.42 0.14 16 33 H 0.08 0.79 7.86 -51.93 -0.41 0.38 16 34 H 0.08 0.98 7.73 -51.93 -0.40 0.58 16 35 H 0.07 1.05 7.80 -51.93 -0.41 0.64 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.41 6.04 8.48 -34.47 -0.29 5.74 16 38 H 0.11 2.21 7.32 -52.49 -0.38 1.82 16 39 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 41 H 0.13 3.06 6.21 -52.49 -0.33 2.73 16 42 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 43 H 0.06 0.66 8.12 -51.93 -0.42 0.23 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 375.48 15.07 5.66 5.66 Total: -1.00 -30.24 375.48 -10.94 -41.18 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -6.70 Total: 11.55 kcal Atomic # 6 Polarization: -35.86 SS G_CDS: -2.61 Total: -38.47 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.55 Total: -36.78 kcal Atomic # 8 Polarization: -50.38 SS G_CDS: -2.28 Total: -52.66 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Atomic # 16 Polarization: 57.45 SS G_CDS: -0.53 Total: 56.92 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.24 -10.94 -41.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601440179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.588 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds