Wall clock time and date at job start Tue Mar 31 2020 23:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.41806 * 2 1 4 4 C 1.54482 * 110.36703 * 237.69332 * 2 1 3 5 5 C 1.54512 * 104.05948 * 217.18810 * 4 2 1 6 6 H 1.09003 * 110.50675 * 118.64522 * 5 4 2 7 7 C 1.52992 * 110.62903 * 241.29800 * 5 4 2 8 8 N 1.46493 * 109.47374 * 289.71242 * 7 5 4 9 9 S 1.65602 * 120.00256 * 165.97944 * 8 7 5 10 10 O 1.42100 * 106.40276 * 176.35335 * 9 8 7 11 11 O 1.42093 * 106.40296 * 309.27722 * 9 8 7 12 12 C 1.76211 * 107.21696 * 62.81428 * 9 8 7 13 13 C 1.37636 * 120.12965 * 245.81499 * 12 9 8 14 14 C 1.38605 * 120.25032 * 179.97438 * 13 12 9 15 15 C 1.38660 * 120.50113 * 0.02562 * 14 13 12 16 16 C 1.37593 * 120.24815 * 0.02562 * 15 14 13 17 17 C 1.40695 * 120.12474 * 65.53842 * 12 9 8 18 18 C 1.41396 * 120.24732 * 0.02562 * 17 12 9 19 19 H 1.07998 * 119.99902 * 331.42361 * 18 17 12 20 20 C 1.39945 * 120.00209 * 151.42203 * 18 17 12 21 21 N 1.30818 * 120.00250 * 348.42705 * 20 18 17 22 22 Si 1.86799 * 120.00000 * 168.42158 * 20 18 17 23 23 H 1.48504 * 109.46943 * 60.00303 * 22 20 18 24 24 H 1.48498 * 109.47316 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47432 * 300.00327 * 22 20 18 26 26 C 1.54482 * 104.06383 * 0.02562 * 5 4 2 27 27 H 1.09001 * 110.46529 * 265.09682 * 26 5 4 28 28 C 1.53003 * 110.37365 * 142.80770 * 26 5 4 29 29 O 1.44420 * 110.37052 * 122.31217 * 2 1 3 30 30 H 1.09007 * 109.46725 * 299.14524 * 1 2 3 31 31 H 1.08998 * 109.47090 * 59.13533 * 1 2 3 32 32 H 1.08991 * 109.47442 * 179.14381 * 1 2 3 33 33 H 1.08993 * 110.51412 * 335.83745 * 4 2 1 34 34 H 1.08997 * 110.50802 * 98.54894 * 4 2 1 35 35 H 1.08999 * 109.47381 * 49.71520 * 7 5 4 36 36 H 1.09001 * 109.47210 * 169.71178 * 7 5 4 37 37 H 0.96998 * 120.00120 * 345.97717 * 8 7 5 38 38 H 1.07999 * 119.87098 * 0.02562 * 13 12 9 39 39 H 1.08002 * 119.75099 * 180.02562 * 14 13 12 40 40 H 1.07998 * 119.87589 * 180.02562 * 15 14 13 41 41 H 1.08000 * 120.13043 * 179.97438 * 16 15 14 42 42 H 0.97003 * 120.00401 * 179.97438 * 21 20 18 43 43 H 1.09005 * 109.46791 * 303.16414 * 28 26 5 44 44 H 1.08994 * 109.46772 * 63.16315 * 28 26 5 45 45 H 1.08999 * 109.46978 * 183.16541 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0677 -0.7740 -1.2240 5 6 3.3177 -1.5057 -0.6860 6 1 3.1954 -2.5853 -0.7734 7 6 4.5729 -1.0477 -1.4314 8 7 4.5389 -1.5578 -2.8043 9 16 5.5760 -0.9455 -3.9410 10 8 5.3576 -1.6949 -5.1284 11 8 5.4491 0.4684 -3.8798 12 6 7.2134 -1.3215 -3.4094 13 6 8.0744 -0.3080 -3.0546 14 6 9.3628 -0.6009 -2.6356 15 6 9.7995 -1.9152 -2.5693 16 6 8.9564 -2.9443 -2.9202 17 6 7.6438 -2.6592 -3.3405 18 6 6.7664 -3.7090 -3.6975 19 1 5.7002 -3.5857 -3.5781 20 6 7.2797 -4.9077 -4.2055 21 7 8.5358 -4.9821 -4.5630 22 14 6.1710 -6.4018 -4.3730 23 1 5.0420 -6.0809 -5.2827 24 1 6.9500 -7.5362 -4.9312 25 1 5.6398 -6.7763 -3.0377 26 6 3.3870 -1.0877 0.7995 27 1 4.0524 -0.2334 0.9244 28 6 3.8598 -2.2602 1.6613 29 8 2.0328 -0.7237 1.1442 30 1 -0.3633 0.5005 0.8976 31 1 -0.3633 0.5272 -0.8821 32 1 -0.3634 -1.0274 -0.0154 33 1 1.3275 -1.4918 -1.5773 34 1 2.3429 -0.0838 -2.0215 35 1 4.6077 0.0416 -1.4493 36 1 5.4576 -1.4312 -0.9231 37 1 3.9091 -2.2542 -3.0475 38 1 7.7446 0.7193 -3.1021 39 1 10.0315 0.2007 -2.3587 40 1 10.8053 -2.1319 -2.2410 41 1 9.2987 -3.9673 -2.8682 42 1 8.8917 -5.8131 -4.9148 43 1 3.1935 -3.1104 1.5151 44 1 4.8730 -2.5386 1.3716 45 1 3.8496 -1.9669 2.7110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601440179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:44 Heat of formation + Delta-G solvation = -138.879589 kcal Electronic energy + Delta-G solvation = -28424.567849 eV Core-core repulsion = 24532.095912 eV Total energy + Delta-G solvation = -3892.471937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.82507 -39.37176 -38.03868 -36.67395 -36.62599 -35.65781 -33.67089 -32.78555 -31.99868 -31.34386 -29.74382 -27.37219 -26.78487 -23.84044 -23.44009 -22.92706 -22.45220 -21.39473 -20.20003 -19.49620 -18.48909 -18.03695 -17.25589 -17.15002 -16.80897 -16.60595 -16.22738 -16.01964 -15.71843 -15.08751 -14.97615 -14.88723 -14.45920 -14.32787 -13.99698 -13.72667 -13.52297 -13.35713 -13.26225 -13.03816 -12.98841 -12.93213 -12.84279 -12.77328 -12.76281 -12.70591 -12.49022 -12.29612 -12.15837 -11.66511 -11.65177 -11.61716 -11.51961 -11.17185 -11.11654 -10.66652 -10.24270 -9.83157 -9.42419 -8.78479 -6.60649 -0.16413 0.54043 0.98682 1.37106 1.48310 1.53146 2.15992 2.34259 2.64436 2.87095 2.99285 3.46656 3.60815 3.67537 3.77927 3.91436 4.04641 4.26626 4.32738 4.34759 4.40161 4.42979 4.51175 4.52237 4.63054 4.69391 4.73011 4.79946 4.87528 4.94503 5.00711 5.10767 5.14618 5.16056 5.17969 5.24051 5.29634 5.31572 5.35199 5.52870 5.71639 5.83469 5.98267 6.01713 6.08798 6.22164 6.48465 6.68324 6.84601 8.17116 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011183 B = 0.004296 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.261189 B = 6516.325230 C = 7186.981353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.064 3.936 3 H 0.071 0.929 4 C -0.150 4.150 5 C -0.118 4.118 6 H 0.097 0.903 7 C 0.130 3.870 8 N -1.107 6.107 9 S 2.720 3.280 10 O -1.000 7.000 11 O -1.009 7.009 12 C -0.792 4.792 13 C -0.016 4.016 14 C -0.251 4.251 15 C -0.076 4.076 16 C -0.186 4.186 17 C 0.163 3.837 18 C -0.473 4.473 19 H 0.094 0.906 20 C 0.039 3.961 21 N -0.809 5.809 22 Si 0.974 3.026 23 H -0.262 1.262 24 H -0.264 1.264 25 H -0.244 1.244 26 C 0.076 3.924 27 H 0.076 0.924 28 C -0.146 4.146 29 O -0.384 6.384 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.421 0.579 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.295 0.705 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.151 2.706 9.686 14.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.006 3.994 3 H 0.089 0.911 4 C -0.188 4.188 5 C -0.138 4.138 6 H 0.116 0.884 7 C 0.004 3.996 8 N -0.868 5.868 9 S 2.817 3.183 10 O -0.990 6.990 11 O -0.999 6.999 12 C -0.886 4.886 13 C -0.036 4.036 14 C -0.271 4.271 15 C -0.095 4.095 16 C -0.206 4.206 17 C 0.158 3.842 18 C -0.501 4.501 19 H 0.112 0.888 20 C -0.179 4.179 21 N -0.433 5.433 22 Si 0.793 3.207 23 H -0.186 1.186 24 H -0.189 1.189 25 H -0.167 1.167 26 C 0.018 3.982 27 H 0.093 0.907 28 C -0.203 4.203 29 O -0.305 6.305 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.257 0.743 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.132 0.868 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.232 3.111 9.060 14.017 hybrid contribution 0.542 -1.126 -0.272 1.279 sum -9.690 1.985 8.788 13.232 Atomic orbital electron populations 1.21799 0.92003 1.03007 1.03140 1.23124 0.96286 0.95442 0.84510 0.91081 1.23139 0.97014 1.00112 0.98488 1.22755 0.93977 1.02221 0.94861 0.88434 1.21304 0.98696 0.98889 0.80703 1.55243 1.53096 1.55473 1.23012 1.00334 0.73668 0.71837 0.72495 1.93496 1.86225 1.72901 1.46369 1.93422 1.87349 1.31741 1.87375 1.30155 1.23736 1.00512 1.34217 1.20572 0.93776 0.96924 0.92319 1.20889 0.96952 0.96420 1.12797 1.21248 0.98556 0.93320 0.96340 1.21590 0.95650 0.98831 1.04538 1.17298 0.92958 0.89772 0.84128 1.20120 0.95583 0.98429 1.36000 0.88762 1.26798 0.96830 1.02700 0.91549 1.69813 1.15952 1.29330 1.28165 0.85354 0.78836 0.75855 0.80630 1.18601 1.18854 1.16734 1.22992 0.84563 0.98092 0.92561 0.90655 1.21824 1.01797 0.96697 0.99952 1.89108 1.27506 1.74763 1.39076 0.91759 0.89775 0.91961 0.89452 0.90236 0.90575 0.91503 0.74350 0.85995 0.85567 0.86073 0.86758 0.89412 0.91802 0.90430 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.52 71.98 0.69 -1.58 16 2 C 0.06 1.27 3.92 31.10 0.12 1.39 16 3 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.15 -3.08 6.17 31.61 0.20 -2.89 16 5 C -0.12 -2.64 2.70 -9.78 -0.03 -2.66 16 6 H 0.10 2.11 7.86 -2.39 -0.02 2.09 16 7 C 0.13 3.57 5.28 86.38 0.46 4.03 16 8 N -1.11 -35.84 5.02 -187.51 -0.94 -36.78 16 9 S 2.72 115.44 4.96 -56.49 -0.28 115.16 16 10 O -1.00 -49.40 16.52 -128.00 -2.11 -51.51 16 11 O -1.01 -44.10 16.53 -128.00 -2.12 -46.21 16 12 C -0.79 -37.06 5.90 22.73 0.13 -36.93 16 13 C -0.02 -0.71 9.53 22.22 0.21 -0.50 16 14 C -0.25 -10.34 10.05 22.46 0.23 -10.11 16 15 C -0.08 -3.28 10.02 22.22 0.22 -3.05 16 16 C -0.19 -9.13 8.66 22.73 0.20 -8.94 16 17 C 0.16 8.21 5.55 -21.29 -0.12 8.09 16 18 C -0.47 -23.43 7.63 23.46 0.18 -23.25 16 19 H 0.09 4.30 5.83 -2.91 -0.02 4.29 16 20 C 0.04 1.86 5.24 85.26 0.45 2.31 16 21 N -0.81 -39.86 10.85 21.83 0.24 -39.62 16 22 Si 0.97 35.76 29.57 68.60 2.03 37.79 16 23 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 24 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 25 H -0.24 -8.26 7.11 99.48 0.71 -7.55 16 26 C 0.08 1.65 3.47 31.10 0.11 1.75 16 27 H 0.08 1.57 7.87 -2.39 -0.02 1.55 16 28 C -0.15 -2.84 9.53 71.98 0.69 -2.15 16 29 O -0.38 -9.01 11.04 -148.98 -1.64 -10.65 16 30 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.00 8.12 -2.39 -0.02 0.98 16 33 H 0.09 1.61 7.86 -2.39 -0.02 1.59 16 34 H 0.08 1.72 7.73 -2.39 -0.02 1.71 16 35 H 0.08 2.07 7.80 -2.39 -0.02 2.05 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.42 12.01 8.48 -96.75 -0.82 11.19 16 38 H 0.12 4.86 7.32 -2.91 -0.02 4.84 16 39 H 0.13 4.34 8.06 -2.91 -0.02 4.31 16 40 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 41 H 0.11 5.75 6.21 -2.91 -0.02 5.73 16 42 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 43 H 0.06 1.23 8.12 -2.38 -0.02 1.21 16 44 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -64.29 375.48 -0.93 -65.22 By element: Atomic # 1 Polarization: 40.92 SS G_CDS: 0.18 Total: 41.10 kcal Atomic # 6 Polarization: -78.21 SS G_CDS: 3.73 Total: -74.49 kcal Atomic # 7 Polarization: -75.70 SS G_CDS: -0.71 Total: -76.40 kcal Atomic # 8 Polarization: -102.51 SS G_CDS: -5.87 Total: -108.38 kcal Atomic # 14 Polarization: 35.76 SS G_CDS: 2.03 Total: 37.79 kcal Atomic # 16 Polarization: 115.44 SS G_CDS: -0.28 Total: 115.16 kcal Total: -64.29 -0.93 -65.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601440179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.661 kcal (2) G-P(sol) polarization free energy of solvation -64.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds