Wall clock time and date at job start Tue Mar 31 2020 23:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.54959 * 2 1 4 4 C 1.54995 * 110.61670 * 237.11780 * 2 1 3 5 5 C 1.54806 * 102.09020 * 204.47420 * 4 2 1 6 6 H 1.09002 * 110.49158 * 262.20113 * 5 4 2 7 7 C 1.53013 * 110.48761 * 139.69231 * 5 4 2 8 8 N 1.46498 * 109.47140 * 65.45571 * 7 5 4 9 9 S 1.65597 * 119.99950 * 162.34448 * 8 7 5 10 10 O 1.42100 * 106.40135 * 178.89507 * 9 8 7 11 11 O 1.42100 * 106.39933 * 311.81583 * 9 8 7 12 12 C 1.76196 * 107.22002 * 65.35362 * 9 8 7 13 13 C 1.37638 * 120.12907 * 245.33105 * 12 9 8 14 14 C 1.38610 * 120.24531 * 179.97438 * 13 12 9 15 15 C 1.38653 * 120.50580 * 0.02635 * 14 13 12 16 16 C 1.37600 * 120.24725 * 0.02562 * 15 14 13 17 17 C 1.40700 * 120.12756 * 65.05960 * 12 9 8 18 18 C 1.41398 * 120.24145 * 359.97438 * 17 12 9 19 19 H 1.07996 * 120.00496 * 329.13109 * 18 17 12 20 20 C 1.39954 * 119.99926 * 149.13314 * 18 17 12 21 21 N 1.30816 * 119.99704 * 344.14006 * 20 18 17 22 22 Si 1.86794 * 119.99901 * 164.14030 * 20 18 17 23 23 H 1.48501 * 109.47205 * 94.97551 * 22 20 18 24 24 H 1.48497 * 109.47291 * 214.97434 * 22 20 18 25 25 H 1.48499 * 109.47327 * 334.97503 * 22 20 18 26 26 C 1.54095 * 104.19186 * 20.88268 * 5 4 2 27 27 H 1.09002 * 109.88119 * 242.60570 * 26 5 4 28 28 C 1.53005 * 109.88104 * 121.44999 * 26 5 4 29 29 O 1.43747 * 107.29355 * 2.02854 * 26 5 4 30 30 H 1.09007 * 109.46961 * 182.88539 * 1 2 3 31 31 H 1.08999 * 109.46841 * 302.87681 * 1 2 3 32 32 H 1.08996 * 109.47317 * 62.88171 * 1 2 3 33 33 H 1.08993 * 110.90897 * 86.27710 * 4 2 1 34 34 H 1.08997 * 110.90882 * 322.67109 * 4 2 1 35 35 H 1.08995 * 109.47083 * 185.45996 * 7 5 4 36 36 H 1.08996 * 109.46732 * 305.45650 * 7 5 4 37 37 H 0.97002 * 120.00079 * 342.34008 * 8 7 5 38 38 H 1.08000 * 119.87521 * 0.02562 * 13 12 9 39 39 H 1.07999 * 119.74820 * 179.97438 * 14 13 12 40 40 H 1.08000 * 119.87689 * 179.97438 * 15 14 13 41 41 H 1.08000 * 120.12278 * 179.97438 * 16 15 14 42 42 H 0.96998 * 119.99656 * 179.97438 * 21 20 18 43 43 H 1.08998 * 109.46556 * 58.86654 * 28 26 5 44 44 H 1.08999 * 109.47381 * 178.86324 * 28 26 5 45 45 H 1.09000 * 109.47217 * 298.86519 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7876 -1.2183 5 6 3.4794 -1.2156 -0.7253 6 1 4.2407 -0.5316 -1.1005 7 6 3.7868 -2.6491 -1.1633 8 7 3.8790 -2.7041 -2.6244 9 16 4.6179 -3.9909 -3.3595 10 8 4.5218 -3.7630 -4.7588 11 8 5.8547 -4.1816 -2.6862 12 6 3.6412 -5.4174 -3.0195 13 6 4.1526 -6.4374 -2.2498 14 6 3.3861 -7.5604 -1.9803 15 6 2.0981 -7.6705 -2.4818 16 6 1.5668 -6.6635 -3.2545 17 6 2.3333 -5.5156 -3.5289 18 6 1.7952 -4.4712 -4.3156 19 1 2.1051 -3.4510 -4.1439 20 6 0.8608 -4.7595 -5.3169 21 7 0.7129 -5.9887 -5.7391 22 14 -0.1750 -3.3889 -6.0503 23 1 0.4714 -2.8892 -7.2903 24 1 -1.5280 -3.9092 -6.3725 25 1 -0.2920 -2.2786 -5.0711 26 6 3.3840 -1.1266 0.8101 27 1 4.0854 -0.3799 1.1825 28 6 3.6935 -2.4905 1.4307 29 8 2.0385 -0.7369 1.1327 30 1 -0.3633 -1.0264 0.0517 31 1 -0.3633 0.5579 0.8631 32 1 -0.3634 0.4684 -0.9146 33 1 2.1509 -0.1447 -2.0952 34 1 1.4550 -1.6585 -1.4282 35 1 4.7338 -2.9671 -0.7273 36 1 2.9902 -3.3113 -0.8243 37 1 3.5071 -1.9869 -3.1612 38 1 5.1545 -6.3621 -1.8536 39 1 3.7955 -8.3562 -1.3758 40 1 1.5100 -8.5502 -2.2659 41 1 0.5635 -6.7515 -3.6445 42 1 0.0651 -6.1886 -6.4328 43 1 4.6936 -2.8061 1.1337 44 1 3.6439 -2.4152 2.5169 45 1 2.9636 -3.2217 1.0835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601440180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:50 Heat of formation + Delta-G solvation = -115.813552 kcal Electronic energy + Delta-G solvation = -28842.091700 eV Core-core repulsion = 24950.619982 eV Total energy + Delta-G solvation = -3891.471718 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.98001 -37.60897 -36.25989 -35.47696 -34.83904 -33.88994 -32.81683 -31.67479 -30.23613 -29.60641 -28.73739 -25.66502 -25.39646 -23.62867 -21.68316 -21.33733 -21.17671 -19.82304 -18.61492 -17.71146 -17.05417 -16.69693 -16.16818 -15.77771 -15.54856 -15.32290 -14.81437 -14.38024 -14.29015 -14.08756 -13.33428 -13.30827 -13.15481 -12.93134 -12.75890 -12.68306 -12.24820 -12.07235 -11.94921 -11.89439 -11.60164 -11.43049 -11.30252 -11.19685 -11.16527 -11.06455 -11.00088 -10.81179 -10.76091 -10.70527 -10.57661 -10.42988 -9.90089 -9.66098 -9.45392 -9.41700 -8.77219 -8.05167 -7.62498 -7.07399 -4.76710 1.52323 2.32234 2.70502 2.94430 2.97216 3.08518 3.72607 3.74941 3.92279 4.37783 4.49439 4.58257 4.73750 4.82680 4.91982 5.09612 5.22401 5.27297 5.34311 5.42459 5.47005 5.54612 5.59635 5.66305 5.71820 5.86926 5.89549 5.96399 6.03007 6.05092 6.13827 6.20927 6.21179 6.30958 6.33768 6.40748 6.76450 6.89729 6.96491 7.05759 7.28773 7.45862 7.51254 7.63752 7.77698 7.87088 8.25234 8.48323 8.61986 9.88704 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009473 B = 0.005384 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.011250 B = 5199.667936 C = 6401.712794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 H 0.066 0.934 4 C -0.151 4.151 5 C -0.126 4.126 6 H 0.089 0.911 7 C 0.132 3.868 8 N -1.123 6.123 9 S 2.701 3.299 10 O -0.964 6.964 11 O -0.999 6.999 12 C -0.774 4.774 13 C -0.002 4.002 14 C -0.249 4.249 15 C -0.075 4.075 16 C -0.158 4.158 17 C 0.191 3.809 18 C -0.451 4.451 19 H 0.087 0.913 20 C 0.083 3.917 21 N -0.773 5.773 22 Si 0.910 3.090 23 H -0.264 1.264 24 H -0.273 1.273 25 H -0.255 1.255 26 C 0.083 3.917 27 H 0.068 0.932 28 C -0.162 4.162 29 O -0.371 6.371 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.410 0.590 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.117 0.883 42 H 0.288 0.712 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 9.529 8.563 12.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 H 0.084 0.916 4 C -0.188 4.188 5 C -0.146 4.146 6 H 0.107 0.893 7 C 0.005 3.995 8 N -0.879 5.879 9 S 2.798 3.202 10 O -0.954 6.954 11 O -0.989 6.989 12 C -0.869 4.869 13 C -0.022 4.022 14 C -0.270 4.270 15 C -0.094 4.094 16 C -0.178 4.178 17 C 0.186 3.814 18 C -0.479 4.479 19 H 0.105 0.895 20 C -0.138 4.138 21 N -0.396 5.396 22 Si 0.733 3.267 23 H -0.188 1.188 24 H -0.197 1.197 25 H -0.179 1.179 26 C 0.024 3.976 27 H 0.086 0.914 28 C -0.219 4.219 29 O -0.291 6.291 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.243 0.757 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.135 0.865 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.295 9.258 8.201 12.372 hybrid contribution -1.155 0.325 -0.588 1.336 sum -1.450 9.583 7.613 12.325 Atomic orbital electron populations 1.21774 0.93249 1.03261 1.02101 1.23075 0.95160 0.94953 0.85300 0.91598 1.23334 0.95797 1.01510 0.98187 1.22773 0.98425 0.97877 0.95523 0.89291 1.21369 1.02186 0.96012 0.79918 1.55714 1.78506 1.39556 1.14173 1.01066 0.72968 0.73318 0.72841 1.93548 1.87004 1.85206 1.29642 1.93441 1.42321 1.86588 1.76579 1.29894 1.10640 1.20214 1.26188 1.20264 0.97047 0.92393 0.92532 1.20481 0.96699 0.99760 1.10045 1.20882 0.95020 0.97115 0.96348 1.21352 1.00287 0.95470 1.00649 1.16966 0.87323 0.91714 0.85389 1.19785 1.19934 0.95111 1.13093 0.89485 1.25912 0.95553 0.96755 0.95618 1.69795 1.27714 1.20576 1.21482 0.86239 0.78857 0.81273 0.80284 1.18825 1.19734 1.17874 1.22647 0.84740 0.96983 0.93203 0.91385 1.22104 1.02700 0.95967 1.01172 1.88893 1.27819 1.73394 1.39025 0.91455 0.92198 0.91148 0.90150 0.89096 0.90200 0.91094 0.75699 0.87419 0.88705 0.88814 0.86539 0.90124 0.90548 0.92112 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.66 37.16 0.36 -1.12 16 2 C 0.07 0.80 3.98 -25.68 -0.10 0.70 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.15 -1.75 5.55 -24.73 -0.14 -1.89 16 5 C -0.13 -1.49 3.20 -89.09 -0.29 -1.77 16 6 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 7 C 0.13 1.90 4.37 -4.04 -0.02 1.88 16 8 N -1.12 -18.80 5.03 -10.61 -0.05 -18.85 16 9 S 2.70 57.94 4.97 -107.50 -0.53 57.40 16 10 O -0.96 -23.74 16.61 -57.17 -0.95 -24.69 16 11 O -1.00 -22.27 16.39 -57.17 -0.94 -23.20 16 12 C -0.77 -18.18 5.94 -38.87 -0.23 -18.41 16 13 C 0.00 -0.06 9.53 -39.66 -0.38 -0.43 16 14 C -0.25 -5.37 10.05 -39.29 -0.39 -5.77 16 15 C -0.07 -1.65 10.02 -39.66 -0.40 -2.05 16 16 C -0.16 -3.84 8.66 -38.87 -0.34 -4.17 16 17 C 0.19 4.76 5.50 -106.83 -0.59 4.17 16 18 C -0.45 -11.04 7.54 -37.74 -0.28 -11.33 16 19 H 0.09 1.97 5.88 -52.49 -0.31 1.66 16 20 C 0.08 1.98 5.13 -17.34 -0.09 1.89 16 21 N -0.77 -18.94 11.27 55.55 0.63 -18.31 16 22 Si 0.91 17.56 29.59 -169.99 -5.03 12.53 16 23 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 24 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 25 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 26 C 0.08 0.95 4.05 -26.16 -0.11 0.84 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 C -0.16 -1.83 8.40 37.16 0.31 -1.52 16 29 O -0.37 -4.81 10.89 -35.23 -0.38 -5.20 16 30 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.21 7.76 -51.93 -0.40 0.80 16 35 H 0.08 1.13 6.23 -51.93 -0.32 0.81 16 36 H 0.07 1.07 6.85 -51.93 -0.36 0.72 16 37 H 0.41 6.13 7.95 -34.47 -0.27 5.86 16 38 H 0.11 2.22 7.32 -52.49 -0.38 1.83 16 39 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 40 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.12 2.85 6.56 -52.49 -0.34 2.51 16 42 H 0.29 6.33 8.30 -40.82 -0.34 5.99 16 43 H 0.08 0.80 6.76 -51.93 -0.35 0.45 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.89 6.80 -51.93 -0.35 0.54 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -30.42 369.33 -10.83 -41.26 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -6.46 Total: 12.47 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: -2.68 Total: -38.96 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.57 Total: -37.16 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -2.27 Total: -53.10 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Atomic # 16 Polarization: 57.94 SS G_CDS: -0.53 Total: 57.40 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.42 -10.83 -41.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601440180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.557 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds