Wall clock time and date at job start Tue Mar 31 2020 23:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.54959 * 2 1 4 4 C 1.54995 * 110.61670 * 237.11780 * 2 1 3 5 5 C 1.54806 * 102.09020 * 204.47420 * 4 2 1 6 6 H 1.09002 * 110.49158 * 262.20113 * 5 4 2 7 7 C 1.53013 * 110.48761 * 139.69231 * 5 4 2 8 8 N 1.46498 * 109.47140 * 65.45571 * 7 5 4 9 9 S 1.65597 * 119.99950 * 162.34448 * 8 7 5 10 10 O 1.42100 * 106.40135 * 178.89507 * 9 8 7 11 11 O 1.42100 * 106.39933 * 311.81583 * 9 8 7 12 12 C 1.76196 * 107.22002 * 65.35362 * 9 8 7 13 13 C 1.37638 * 120.12907 * 245.33105 * 12 9 8 14 14 C 1.38610 * 120.24531 * 179.97438 * 13 12 9 15 15 C 1.38653 * 120.50580 * 0.02635 * 14 13 12 16 16 C 1.37600 * 120.24725 * 0.02562 * 15 14 13 17 17 C 1.40700 * 120.12756 * 65.05960 * 12 9 8 18 18 C 1.41398 * 120.24145 * 359.97438 * 17 12 9 19 19 H 1.07996 * 120.00496 * 329.13109 * 18 17 12 20 20 C 1.39954 * 119.99926 * 149.13314 * 18 17 12 21 21 N 1.30816 * 119.99704 * 344.14006 * 20 18 17 22 22 Si 1.86794 * 119.99901 * 164.14030 * 20 18 17 23 23 H 1.48501 * 109.47205 * 94.97551 * 22 20 18 24 24 H 1.48497 * 109.47291 * 214.97434 * 22 20 18 25 25 H 1.48499 * 109.47327 * 334.97503 * 22 20 18 26 26 C 1.54095 * 104.19186 * 20.88268 * 5 4 2 27 27 H 1.09002 * 109.88119 * 242.60570 * 26 5 4 28 28 C 1.53005 * 109.88104 * 121.44999 * 26 5 4 29 29 O 1.43747 * 107.29355 * 2.02854 * 26 5 4 30 30 H 1.09007 * 109.46961 * 182.88539 * 1 2 3 31 31 H 1.08999 * 109.46841 * 302.87681 * 1 2 3 32 32 H 1.08996 * 109.47317 * 62.88171 * 1 2 3 33 33 H 1.08993 * 110.90897 * 86.27710 * 4 2 1 34 34 H 1.08997 * 110.90882 * 322.67109 * 4 2 1 35 35 H 1.08995 * 109.47083 * 185.45996 * 7 5 4 36 36 H 1.08996 * 109.46732 * 305.45650 * 7 5 4 37 37 H 0.97002 * 120.00079 * 342.34008 * 8 7 5 38 38 H 1.08000 * 119.87521 * 0.02562 * 13 12 9 39 39 H 1.07999 * 119.74820 * 179.97438 * 14 13 12 40 40 H 1.08000 * 119.87689 * 179.97438 * 15 14 13 41 41 H 1.08000 * 120.12278 * 179.97438 * 16 15 14 42 42 H 0.96998 * 119.99656 * 179.97438 * 21 20 18 43 43 H 1.08998 * 109.46556 * 58.86654 * 28 26 5 44 44 H 1.08999 * 109.47381 * 178.86324 * 28 26 5 45 45 H 1.09000 * 109.47217 * 298.86519 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7876 -1.2183 5 6 3.4794 -1.2156 -0.7253 6 1 4.2407 -0.5316 -1.1005 7 6 3.7868 -2.6491 -1.1633 8 7 3.8790 -2.7041 -2.6244 9 16 4.6179 -3.9909 -3.3595 10 8 4.5218 -3.7630 -4.7588 11 8 5.8547 -4.1816 -2.6862 12 6 3.6412 -5.4174 -3.0195 13 6 4.1526 -6.4374 -2.2498 14 6 3.3861 -7.5604 -1.9803 15 6 2.0981 -7.6705 -2.4818 16 6 1.5668 -6.6635 -3.2545 17 6 2.3333 -5.5156 -3.5289 18 6 1.7952 -4.4712 -4.3156 19 1 2.1051 -3.4510 -4.1439 20 6 0.8608 -4.7595 -5.3169 21 7 0.7129 -5.9887 -5.7391 22 14 -0.1750 -3.3889 -6.0503 23 1 0.4714 -2.8892 -7.2903 24 1 -1.5280 -3.9092 -6.3725 25 1 -0.2920 -2.2786 -5.0711 26 6 3.3840 -1.1266 0.8101 27 1 4.0854 -0.3799 1.1825 28 6 3.6935 -2.4905 1.4307 29 8 2.0385 -0.7369 1.1327 30 1 -0.3633 -1.0264 0.0517 31 1 -0.3633 0.5579 0.8631 32 1 -0.3634 0.4684 -0.9146 33 1 2.1509 -0.1447 -2.0952 34 1 1.4550 -1.6585 -1.4282 35 1 4.7338 -2.9671 -0.7273 36 1 2.9902 -3.3113 -0.8243 37 1 3.5071 -1.9869 -3.1612 38 1 5.1545 -6.3621 -1.8536 39 1 3.7955 -8.3562 -1.3758 40 1 1.5100 -8.5502 -2.2659 41 1 0.5635 -6.7515 -3.6445 42 1 0.0651 -6.1886 -6.4328 43 1 4.6936 -2.8061 1.1337 44 1 3.6439 -2.4152 2.5169 45 1 2.9636 -3.2217 1.0835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601440180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:49 Heat of formation + Delta-G solvation = -135.477640 kcal Electronic energy + Delta-G solvation = -28842.944399 eV Core-core repulsion = 24950.619982 eV Total energy + Delta-G solvation = -3892.324417 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.90700 -39.37352 -38.03757 -36.70300 -36.64369 -35.64458 -33.71428 -32.78219 -32.00315 -31.38516 -29.61080 -27.36055 -26.61367 -24.56180 -23.44259 -22.95627 -22.21411 -20.85188 -20.21170 -19.48975 -18.49559 -17.91212 -17.80552 -17.15353 -16.82704 -16.65520 -16.07600 -15.91094 -15.64989 -15.23903 -15.04783 -14.93949 -14.45615 -14.26622 -14.00385 -13.68347 -13.54272 -13.32161 -13.20676 -13.03510 -12.98490 -12.94910 -12.85566 -12.80454 -12.77397 -12.72210 -12.48378 -12.17090 -12.11513 -11.71723 -11.63867 -11.62149 -11.46471 -11.16320 -11.12783 -10.55742 -10.19268 -9.83491 -9.43117 -8.81773 -6.59540 -0.15692 0.53506 0.96941 1.36250 1.47676 1.52510 2.15520 2.34597 2.63164 2.88968 3.00002 3.45374 3.55073 3.60225 3.85482 3.97732 4.05737 4.23795 4.29044 4.33452 4.45218 4.48330 4.51208 4.55586 4.61713 4.70844 4.71763 4.78369 4.88479 4.94468 4.99174 5.03377 5.11910 5.18892 5.20944 5.26343 5.30177 5.33458 5.38291 5.52454 5.70461 5.79661 5.99215 6.08436 6.09811 6.23390 6.46598 6.68227 6.83067 8.17517 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009473 B = 0.005384 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.011250 B = 5199.667936 C = 6401.712794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 H 0.086 0.914 4 C -0.153 4.153 5 C -0.120 4.120 6 H 0.109 0.891 7 C 0.127 3.873 8 N -1.109 6.109 9 S 2.721 3.279 10 O -0.999 6.999 11 O -1.008 7.008 12 C -0.792 4.792 13 C -0.015 4.015 14 C -0.250 4.250 15 C -0.075 4.075 16 C -0.186 4.186 17 C 0.166 3.834 18 C -0.479 4.479 19 H 0.096 0.904 20 C 0.041 3.959 21 N -0.809 5.809 22 Si 0.971 3.029 23 H -0.267 1.267 24 H -0.262 1.262 25 H -0.239 1.239 26 C 0.082 3.918 27 H 0.089 0.911 28 C -0.164 4.164 29 O -0.392 6.392 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.420 0.580 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.295 0.705 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.858 11.140 9.451 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 H 0.104 0.896 4 C -0.191 4.191 5 C -0.140 4.140 6 H 0.127 0.873 7 C 0.002 3.998 8 N -0.869 5.869 9 S 2.817 3.183 10 O -0.989 6.989 11 O -0.998 6.998 12 C -0.885 4.885 13 C -0.035 4.035 14 C -0.270 4.270 15 C -0.093 4.093 16 C -0.206 4.206 17 C 0.162 3.838 18 C -0.507 4.507 19 H 0.114 0.886 20 C -0.178 4.178 21 N -0.433 5.433 22 Si 0.790 3.210 23 H -0.192 1.192 24 H -0.186 1.186 25 H -0.161 1.161 26 C 0.024 3.976 27 H 0.107 0.893 28 C -0.221 4.221 29 O -0.312 6.312 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.255 0.745 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.123 0.877 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.087 0.913 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.217 10.846 9.102 14.161 hybrid contribution -1.115 -0.248 -0.765 1.375 sum -1.332 10.599 8.337 13.551 Atomic orbital electron populations 1.21795 0.92876 1.02463 1.03229 1.23226 0.95588 0.95516 0.84260 0.89598 1.23353 0.95295 1.01145 0.99319 1.22768 0.99115 0.96114 0.96023 0.87304 1.21554 1.02116 0.98035 0.78144 1.55297 1.78099 1.38184 1.15341 1.00319 0.72677 0.73324 0.71978 1.93493 1.87486 1.85742 1.32211 1.93420 1.42881 1.86954 1.76547 1.30226 1.10470 1.21800 1.26048 1.20598 0.97942 0.92508 0.92462 1.20884 0.96323 1.00212 1.09609 1.21228 0.95611 0.97356 0.95134 1.21415 1.00222 0.96669 1.02275 1.17283 0.88098 0.92369 0.86066 1.20097 1.21172 0.95544 1.13848 0.88615 1.26803 0.96233 0.99026 0.95703 1.69840 1.28654 1.22395 1.22373 0.85346 0.77440 0.78782 0.79438 1.19165 1.18592 1.16124 1.22751 0.84700 0.97445 0.92721 0.89296 1.22124 1.02555 0.95720 1.01749 1.88877 1.28567 1.73866 1.39934 0.93167 0.91439 0.89706 0.88467 0.91304 0.89732 0.92253 0.74474 0.85858 0.85481 0.86056 0.87686 0.89453 0.89792 0.91322 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.66 71.98 0.70 -2.04 16 2 C 0.07 1.42 3.98 31.28 0.12 1.54 16 3 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.15 -3.31 5.55 31.89 0.18 -3.13 16 5 C -0.12 -2.59 3.20 -9.80 -0.03 -2.63 16 6 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 7 C 0.13 3.56 4.37 86.38 0.38 3.94 16 8 N -1.11 -36.35 5.03 -187.48 -0.94 -37.30 16 9 S 2.72 116.56 4.97 -56.49 -0.28 116.28 16 10 O -1.00 -49.71 16.61 -128.00 -2.13 -51.84 16 11 O -1.01 -44.23 16.39 -128.00 -2.10 -46.32 16 12 C -0.79 -37.50 5.94 22.73 0.14 -37.37 16 13 C -0.02 -0.68 9.53 22.22 0.21 -0.47 16 14 C -0.25 -10.46 10.05 22.46 0.23 -10.24 16 15 C -0.07 -3.27 10.02 22.22 0.22 -3.04 16 16 C -0.19 -9.24 8.66 22.73 0.20 -9.04 16 17 C 0.17 8.48 5.50 -21.29 -0.12 8.36 16 18 C -0.48 -23.87 7.54 23.46 0.18 -23.69 16 19 H 0.10 4.39 5.88 -2.91 -0.02 4.37 16 20 C 0.04 1.95 5.13 85.26 0.44 2.38 16 21 N -0.81 -40.61 11.27 21.83 0.25 -40.36 16 22 Si 0.97 35.73 29.59 68.60 2.03 37.76 16 23 H -0.27 -9.89 7.11 99.48 0.71 -9.19 16 24 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 25 H -0.24 -8.03 7.11 99.48 0.71 -7.33 16 26 C 0.08 1.72 4.05 30.97 0.13 1.84 16 27 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 28 C -0.16 -3.52 8.40 71.98 0.60 -2.91 16 29 O -0.39 -9.53 10.89 -148.98 -1.62 -11.15 16 30 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 1.80 7.76 -2.39 -0.02 1.78 16 35 H 0.08 2.29 6.23 -2.39 -0.01 2.28 16 36 H 0.06 1.81 6.85 -2.39 -0.02 1.80 16 37 H 0.42 12.13 7.95 -96.74 -0.77 11.36 16 38 H 0.12 4.95 7.32 -2.91 -0.02 4.93 16 39 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 40 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 41 H 0.11 5.34 6.56 -2.91 -0.02 5.32 16 42 H 0.29 13.26 8.30 -92.71 -0.77 12.49 16 43 H 0.08 1.63 6.76 -2.39 -0.02 1.62 16 44 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.05 1.35 6.80 -2.39 -0.02 1.33 16 Total: -1.00 -65.80 369.33 -0.99 -66.79 By element: Atomic # 1 Polarization: 42.38 SS G_CDS: 0.24 Total: 42.62 kcal Atomic # 6 Polarization: -80.05 SS G_CDS: 3.56 Total: -76.48 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -0.70 Total: -77.66 kcal Atomic # 8 Polarization: -103.47 SS G_CDS: -5.85 Total: -109.32 kcal Atomic # 14 Polarization: 35.73 SS G_CDS: 2.03 Total: 37.76 kcal Atomic # 16 Polarization: 116.56 SS G_CDS: -0.28 Total: 116.28 kcal Total: -65.80 -0.99 -66.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601440180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.686 kcal (2) G-P(sol) polarization free energy of solvation -65.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds