Wall clock time and date at job start Tue Mar 31 2020 23:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.67737 * 2 1 4 4 C 1.54999 * 110.62216 * 237.03972 * 2 1 3 5 5 C 1.54805 * 102.09276 * 204.47741 * 4 2 1 6 6 H 1.09004 * 110.48306 * 262.06716 * 5 4 2 7 7 C 1.52999 * 110.48734 * 139.55857 * 5 4 2 8 8 N 1.46504 * 109.47393 * 66.44772 * 7 5 4 9 9 S 1.65601 * 119.99756 * 163.96633 * 8 7 5 10 10 O 1.42100 * 106.40420 * 313.17427 * 9 8 7 11 11 O 1.42099 * 106.40180 * 180.25382 * 9 8 7 12 12 C 1.76200 * 107.21917 * 66.71724 * 9 8 7 13 13 C 1.37635 * 120.13283 * 111.09734 * 12 9 8 14 14 C 1.38610 * 120.25386 * 180.02562 * 13 12 9 15 15 C 1.38659 * 120.49597 * 0.02562 * 14 13 12 16 16 C 1.37593 * 120.25308 * 0.02562 * 15 14 13 17 17 C 1.40703 * 120.12594 * 291.12306 * 12 9 8 18 18 C 1.41397 * 120.24395 * 359.95483 * 17 12 9 19 19 H 1.07996 * 120.00081 * 328.74723 * 18 17 12 20 20 C 1.39946 * 120.00098 * 148.74736 * 18 17 12 21 21 N 1.30817 * 120.00305 * 166.16453 * 20 18 17 22 22 Si 1.86802 * 119.99672 * 346.15927 * 20 18 17 23 23 H 1.48502 * 109.46920 * 89.01979 * 22 20 18 24 24 H 1.48502 * 109.47060 * 209.01444 * 22 20 18 25 25 H 1.48493 * 109.47558 * 329.01932 * 22 20 18 26 26 C 1.54090 * 104.19042 * 20.87542 * 5 4 2 27 27 H 1.09002 * 109.88051 * 121.45465 * 26 5 4 28 28 C 1.52998 * 109.88016 * 242.60765 * 26 5 4 29 29 O 1.43741 * 107.29687 * 2.03133 * 26 5 4 30 30 H 1.08997 * 109.47125 * 182.96152 * 1 2 3 31 31 H 1.08999 * 109.46821 * 302.96334 * 1 2 3 32 32 H 1.08999 * 109.46971 * 62.95975 * 1 2 3 33 33 H 1.09004 * 110.90762 * 86.27151 * 4 2 1 34 34 H 1.09000 * 110.90339 * 322.67324 * 4 2 1 35 35 H 1.09003 * 109.46742 * 306.44615 * 7 5 4 36 36 H 1.09001 * 109.47277 * 186.45365 * 7 5 4 37 37 H 0.96992 * 119.99564 * 343.96763 * 8 7 5 38 38 H 1.08002 * 119.87375 * 0.02793 * 13 12 9 39 39 H 1.08000 * 119.75331 * 180.02562 * 14 13 12 40 40 H 1.08004 * 119.86996 * 180.27994 * 15 14 13 41 41 H 1.08003 * 120.12727 * 179.97438 * 16 15 14 42 42 H 0.97005 * 120.00168 * 179.97438 * 21 20 18 43 43 H 1.08992 * 109.47542 * 59.99884 * 28 26 5 44 44 H 1.09003 * 109.46993 * 180.02562 * 28 26 5 45 45 H 1.09001 * 109.46957 * 299.99638 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0759 -0.7893 -1.2172 5 6 3.4795 -1.2166 -0.7235 6 1 4.2409 -0.5344 -1.1016 7 6 3.7855 -2.6517 -1.1568 8 7 3.9002 -2.7074 -2.6163 9 16 4.6074 -4.0172 -3.3419 10 8 5.8098 -4.2707 -2.6283 11 8 4.5713 -3.7692 -4.7406 12 6 3.5570 -5.4026 -3.0550 13 6 2.8657 -5.9734 -4.0993 14 6 2.0383 -7.0629 -3.8764 15 6 1.8967 -7.5899 -2.6017 16 6 2.5774 -7.0348 -1.5426 17 6 3.4214 -5.9293 -1.7574 18 6 4.1271 -5.3515 -0.6769 19 1 5.0908 -4.8937 -0.8444 20 6 3.5767 -5.3728 0.6096 21 7 4.3243 -5.0915 1.6457 22 14 1.7744 -5.8027 0.8474 23 1 1.6333 -7.2721 1.0094 24 1 1.2584 -5.1192 2.0606 25 1 0.9989 -5.3586 -0.3385 26 6 3.3839 -1.1254 0.8117 27 1 3.6045 -2.0964 1.2552 28 6 4.3685 -0.0766 1.3328 29 8 2.0385 -0.7353 1.1337 30 1 -0.3633 -1.0263 0.0531 31 1 -0.3633 0.5592 0.8622 32 1 -0.3633 0.4672 -0.9153 33 1 2.1509 -0.1474 -2.0950 34 1 1.4550 -1.6605 -1.4260 35 1 2.9799 -3.3094 -0.8303 36 1 4.7237 -2.9752 -0.7059 37 1 3.5620 -1.9770 -3.1574 38 1 2.9682 -5.5708 -5.0963 39 1 1.4999 -7.5048 -4.7018 40 1 1.2529 -8.4419 -2.4403 41 1 2.4653 -7.4466 -0.5505 42 1 3.9427 -5.1059 2.5374 43 1 4.1286 0.8942 0.8993 44 1 4.2957 -0.0179 2.4188 45 1 5.3830 -0.3593 1.0518 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601440181.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:54 Heat of formation + Delta-G solvation = -113.604844 kcal Electronic energy + Delta-G solvation = -29437.608231 eV Core-core repulsion = 25546.232289 eV Total energy + Delta-G solvation = -3891.375941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.77682 -37.94556 -36.42127 -35.25476 -34.91465 -33.85360 -32.51838 -31.54348 -30.74834 -30.14369 -28.71757 -25.98292 -25.32758 -22.76420 -22.12884 -21.23496 -20.98420 -20.20357 -18.54150 -17.76226 -17.12962 -16.70752 -16.45222 -15.67438 -15.41526 -15.21576 -14.46176 -14.39970 -14.24666 -13.97606 -13.63760 -13.43092 -13.11552 -13.03201 -12.85882 -12.56467 -12.47367 -12.20323 -11.94206 -11.82989 -11.65031 -11.55882 -11.38506 -11.28561 -11.18572 -11.13447 -10.98583 -10.73319 -10.63485 -10.57552 -10.42422 -10.11761 -9.98260 -9.54095 -9.46436 -9.28537 -8.71035 -8.28004 -7.87316 -7.23017 -4.90753 1.45109 2.04430 2.48115 2.91485 3.04916 3.10885 3.72465 3.88328 3.98330 4.21071 4.60221 4.69485 4.80193 4.91327 5.07224 5.15679 5.26020 5.40613 5.43138 5.50914 5.56588 5.63268 5.65051 5.78938 5.80610 5.88143 5.90116 6.02506 6.08305 6.16450 6.20510 6.23870 6.27715 6.37814 6.40427 6.49459 6.60069 6.76485 6.91560 7.05633 7.14851 7.20548 7.39209 7.52585 7.61673 7.79818 8.11897 8.28498 8.49235 9.73105 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010781 B = 0.005933 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.442152 B = 4718.365980 C = 5581.080058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 H 0.065 0.935 4 C -0.150 4.150 5 C -0.128 4.128 6 H 0.087 0.913 7 C 0.135 3.865 8 N -1.121 6.121 9 S 2.707 3.293 10 O -0.967 6.967 11 O -0.998 6.998 12 C -0.770 4.770 13 C 0.018 3.982 14 C -0.258 4.258 15 C -0.044 4.044 16 C -0.239 4.239 17 C 0.163 3.837 18 C -0.464 4.464 19 H 0.138 0.862 20 C 0.092 3.908 21 N -0.773 5.773 22 Si 0.900 3.100 23 H -0.266 1.266 24 H -0.283 1.283 25 H -0.243 1.243 26 C 0.076 3.924 27 H 0.107 0.893 28 C -0.166 4.166 29 O -0.369 6.369 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.405 0.595 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.293 0.707 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.579 8.798 -0.507 10.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.013 3.987 3 H 0.083 0.917 4 C -0.188 4.188 5 C -0.148 4.148 6 H 0.105 0.895 7 C 0.010 3.990 8 N -0.877 5.877 9 S 2.803 3.197 10 O -0.957 6.957 11 O -0.989 6.989 12 C -0.864 4.864 13 C -0.002 4.002 14 C -0.279 4.279 15 C -0.063 4.063 16 C -0.258 4.258 17 C 0.158 3.842 18 C -0.491 4.491 19 H 0.155 0.845 20 C -0.132 4.132 21 N -0.394 5.394 22 Si 0.726 3.274 23 H -0.192 1.192 24 H -0.210 1.210 25 H -0.166 1.166 26 C 0.018 3.982 27 H 0.124 0.876 28 C -0.224 4.224 29 O -0.289 6.289 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.237 0.763 38 H 0.131 0.869 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.104 0.896 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.689 8.714 -0.345 9.902 hybrid contribution -1.473 -0.422 0.161 1.540 sum -6.162 8.292 -0.184 10.333 Atomic orbital electron populations 1.21767 0.93572 1.03064 1.01944 1.23071 0.94854 0.95112 0.85704 0.91741 1.23322 0.96341 1.01001 0.98096 1.22901 0.97719 0.98694 0.95477 0.89504 1.21764 1.04309 0.94396 0.78573 1.55528 1.80365 1.36722 1.15106 1.00898 0.74138 0.73135 0.71499 1.93502 1.43833 1.84901 1.73428 1.93457 1.87945 1.85829 1.31635 1.29909 1.29574 1.25267 1.01642 1.20388 0.90570 0.92931 0.96310 1.20515 1.07962 1.03016 0.96380 1.20847 0.95353 0.96666 0.93390 1.21333 1.05754 1.00541 0.98203 1.17116 0.87832 0.88781 0.90522 1.20568 1.06653 1.31388 0.90463 0.84500 1.26179 1.00555 0.91407 0.95091 1.69644 1.37805 1.31564 1.00349 0.86523 0.82372 0.79251 0.79270 1.19228 1.20952 1.16587 1.22771 0.82529 0.99098 0.93812 0.87566 1.22250 0.99531 0.98850 1.01755 1.88919 1.27760 1.73270 1.38901 0.91639 0.92196 0.91347 0.90455 0.89718 0.90222 0.88686 0.76310 0.86869 0.88121 0.88315 0.87352 0.89626 0.92845 0.92056 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.66 37.16 0.36 -1.23 16 2 C 0.07 0.87 3.92 -25.68 -0.10 0.77 16 3 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 4 C -0.15 -1.90 5.62 -24.72 -0.14 -2.03 16 5 C -0.13 -1.83 2.82 -89.10 -0.25 -2.08 16 6 H 0.09 1.11 7.70 -51.93 -0.40 0.71 16 7 C 0.14 2.39 3.51 -4.04 -0.01 2.38 16 8 N -1.12 -19.20 5.91 -10.61 -0.06 -19.26 16 9 S 2.71 56.58 5.44 -107.50 -0.58 55.99 16 10 O -0.97 -23.06 14.84 -57.17 -0.85 -23.91 16 11 O -1.00 -21.62 16.97 -57.17 -0.97 -22.59 16 12 C -0.77 -17.31 5.97 -38.87 -0.23 -17.55 16 13 C 0.02 0.38 9.53 -39.66 -0.38 0.00 16 14 C -0.26 -5.20 10.05 -39.29 -0.39 -5.59 16 15 C -0.04 -0.90 10.02 -39.66 -0.40 -1.30 16 16 C -0.24 -5.43 7.17 -38.88 -0.28 -5.71 16 17 C 0.16 3.86 5.09 -106.82 -0.54 3.32 16 18 C -0.46 -11.19 5.36 -37.74 -0.20 -11.39 16 19 H 0.14 3.54 4.46 -52.49 -0.23 3.31 16 20 C 0.09 2.10 4.78 -17.34 -0.08 2.02 16 21 N -0.77 -17.79 13.93 55.55 0.77 -17.01 16 22 Si 0.90 18.82 24.26 -169.99 -4.12 14.69 16 23 H -0.27 -5.48 6.46 56.52 0.37 -5.11 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.24 -5.19 6.94 56.52 0.39 -4.80 16 26 C 0.08 1.15 3.76 -26.16 -0.10 1.05 16 27 H 0.11 1.83 7.69 -51.93 -0.40 1.43 16 28 C -0.17 -2.11 9.30 37.16 0.35 -1.76 16 29 O -0.37 -5.76 10.89 -35.23 -0.38 -6.14 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.17 7.74 -51.93 -0.40 0.77 16 35 H 0.08 1.55 5.98 -51.93 -0.31 1.24 16 36 H 0.09 1.88 6.20 -51.93 -0.32 1.56 16 37 H 0.40 5.67 8.27 -34.47 -0.29 5.38 16 38 H 0.11 2.18 7.33 -52.49 -0.38 1.80 16 39 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 41 H 0.11 2.41 4.42 -52.48 -0.23 2.18 16 42 H 0.29 6.14 8.30 -40.82 -0.34 5.80 16 43 H 0.05 0.60 8.11 -51.93 -0.42 0.18 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 358.59 15.07 5.40 5.40 Total: -1.00 -28.50 358.59 -9.58 -38.08 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -6.37 Total: 13.86 kcal Atomic # 6 Polarization: -36.70 SS G_CDS: -2.41 Total: -39.11 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.71 Total: -36.28 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -2.20 Total: -52.64 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.12 Total: 14.69 kcal Atomic # 16 Polarization: 56.58 SS G_CDS: -0.58 Total: 55.99 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.50 -9.58 -38.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601440181.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.526 kcal (2) G-P(sol) polarization free energy of solvation -28.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds