Wall clock time and date at job start Tue Mar 31 2020 23:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99918 * 2 1 4 4 C 1.52996 * 112.84637 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47153 * 173.80449 * 4 3 2 6 6 C 1.52997 * 109.47362 * 293.80313 * 4 3 2 7 7 N 1.46497 * 109.47661 * 53.80695 * 4 3 2 8 8 S 1.65595 * 120.00533 * 144.02254 * 7 4 3 9 9 O 1.42097 * 106.40154 * 311.08655 * 8 7 4 10 10 O 1.42101 * 106.40282 * 178.16803 * 8 7 4 11 11 C 1.76201 * 107.21835 * 64.62940 * 8 7 4 12 12 C 1.37645 * 120.12535 * 243.82090 * 11 8 7 13 13 C 1.38607 * 120.24712 * 180.29223 * 12 11 8 14 14 C 1.38662 * 120.49914 * 359.44654 * 13 12 11 15 15 C 1.37591 * 120.24897 * 0.55486 * 14 13 12 16 16 C 1.40694 * 120.13081 * 63.83416 * 11 8 7 17 17 C 1.41399 * 120.24089 * 359.96440 * 16 11 8 18 18 H 1.08000 * 120.00229 * 330.20890 * 17 16 11 19 19 C 1.39944 * 119.99769 * 150.20326 * 17 16 11 20 20 N 1.30829 * 119.99894 * 166.48309 * 19 17 16 21 21 Si 1.86800 * 120.00310 * 346.48258 * 19 17 16 22 22 H 1.48503 * 109.47130 * 90.05487 * 21 19 17 23 23 H 1.48497 * 109.47085 * 210.05648 * 21 19 17 24 24 H 1.48504 * 109.47023 * 330.05673 * 21 19 17 25 25 C 1.53781 * 113.69176 * 311.26907 * 3 2 1 26 26 C 1.53774 * 87.08368 * 89.12565 * 25 3 2 27 27 C 1.53779 * 113.61323 * 48.80243 * 3 2 1 28 28 H 1.08996 * 109.47063 * 300.00254 * 1 2 3 29 29 H 1.09010 * 109.46674 * 59.99922 * 1 2 3 30 30 H 1.08999 * 109.47238 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47251 * 180.02562 * 6 4 3 32 32 H 1.08998 * 109.47409 * 300.00140 * 6 4 3 33 33 H 1.09003 * 109.47293 * 60.00285 * 6 4 3 34 34 H 0.97001 * 119.99605 * 324.03190 * 7 4 3 35 35 H 1.07998 * 119.87487 * 0.02562 * 12 11 8 36 36 H 1.08004 * 119.75024 * 179.69807 * 13 12 11 37 37 H 1.08000 * 119.87677 * 180.29740 * 14 13 12 38 38 H 1.07999 * 120.12965 * 179.74992 * 15 14 13 39 39 H 0.96991 * 120.00139 * 180.02562 * 20 19 17 40 40 H 1.08997 * 113.61193 * 203.67895 * 25 3 2 41 41 H 1.08999 * 113.61320 * 334.57408 * 25 3 2 42 42 H 1.09002 * 113.61854 * 270.88604 * 26 25 3 43 43 H 1.08996 * 113.61314 * 139.98019 * 26 25 3 44 44 H 1.09005 * 113.61467 * 25.34834 * 27 3 2 45 45 H 1.08998 * 113.61478 * 156.24969 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5399 1.2747 0.0006 5 1 3.9238 2.2888 -0.1103 6 6 4.0376 0.6826 1.3207 7 7 4.0123 0.4493 -1.1137 8 16 5.3915 0.8688 -1.9284 9 8 5.2655 2.2478 -2.2473 10 8 5.6014 -0.1393 -2.9077 11 6 6.7295 0.7418 -0.7890 12 6 7.4449 1.8634 -0.4357 13 6 8.5017 1.7654 0.4557 14 6 8.8434 0.5413 1.0102 15 6 8.1423 -0.5931 0.6715 16 6 7.0710 -0.5065 -0.2370 17 6 6.3428 -1.6654 -0.5921 18 1 5.3002 -1.5864 -0.8626 19 6 6.9733 -2.9148 -0.5933 20 7 6.2581 -4.0083 -0.6594 21 14 8.8359 -3.0213 -0.5007 22 1 9.2578 -3.0884 0.9216 23 1 9.2981 -4.2401 -1.2121 24 1 9.4327 -1.8199 -1.1378 25 6 1.4130 2.2478 -1.0584 26 6 0.3746 2.6522 0.0012 27 6 1.4129 2.2457 1.0602 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 5.1274 0.6611 1.3213 32 1 3.6862 1.2968 2.1498 33 1 3.6538 -0.3315 1.4317 34 1 3.5170 -0.3430 -1.3743 35 1 7.1845 2.8227 -0.8580 36 1 9.0607 2.6498 0.7236 37 1 9.6657 0.4772 1.7075 38 1 8.4126 -1.5462 1.1015 39 1 6.6950 -4.8742 -0.6599 40 1 2.0810 3.0592 -1.3472 41 1 0.9835 1.7269 -1.9142 42 1 -0.5169 2.0250 0.0006 43 1 0.1440 3.7174 0.0022 44 1 0.9833 1.7231 1.9150 45 1 2.0808 3.0566 1.3507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601441380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:34 Heat of formation + Delta-G solvation = -69.109087 kcal Electronic energy + Delta-G solvation = -29415.164481 eV Core-core repulsion = 25525.718021 eV Total energy + Delta-G solvation = -3889.446461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.59152 -37.88016 -36.26455 -35.38860 -34.83717 -34.65660 -33.80957 -30.71280 -30.12543 -29.51152 -27.42925 -25.71986 -25.37996 -24.30527 -22.07573 -21.33366 -21.12521 -19.96735 -18.57185 -17.71491 -17.05376 -16.87963 -16.27162 -15.81079 -15.33979 -15.08947 -14.96997 -14.35385 -14.17141 -13.79704 -13.52113 -13.50551 -13.36407 -13.25439 -12.79037 -12.50131 -12.27472 -12.20599 -12.06884 -11.91202 -11.62766 -11.33018 -11.28145 -11.15151 -11.06826 -11.01563 -10.89704 -10.77217 -10.75113 -10.43874 -10.35691 -9.99853 -9.91694 -9.60695 -9.35431 -9.25796 -8.70004 -8.21578 -7.82081 -7.17542 -4.82797 1.52579 2.09861 2.54304 2.98263 3.10770 3.20979 3.67235 3.81525 3.94336 4.30084 4.45931 4.53408 4.69780 4.73114 4.81630 5.12532 5.21274 5.31182 5.36260 5.53728 5.57258 5.59990 5.68924 5.71229 5.75234 5.82725 5.85331 5.91487 5.92112 5.96609 6.01490 6.21542 6.23323 6.35915 6.41639 6.59245 6.69612 6.87074 6.95865 7.10815 7.26698 7.32061 7.41578 7.56382 7.73981 7.82945 8.09413 8.29703 8.52333 9.81790 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014204 B = 0.004880 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.834738 B = 5736.038877 C = 6385.390275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.348 6.348 3 C 0.096 3.904 4 C 0.184 3.816 5 H 0.097 0.903 6 C -0.171 4.171 7 N -1.108 6.108 8 S 2.700 3.300 9 O -0.999 6.999 10 O -0.962 6.962 11 C -0.769 4.769 12 C 0.017 3.983 13 C -0.262 4.262 14 C -0.042 4.042 15 C -0.240 4.240 16 C 0.162 3.838 17 C -0.424 4.424 18 H 0.106 0.894 19 C 0.088 3.912 20 N -0.779 5.779 21 Si 0.917 3.083 22 H -0.267 1.267 23 H -0.287 1.287 24 H -0.241 1.241 25 C -0.166 4.166 26 C -0.161 4.161 27 C -0.161 4.161 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.419 0.581 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.292 0.708 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.705 7.555 4.408 12.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.266 6.266 3 C 0.055 3.945 4 C 0.076 3.924 5 H 0.114 0.886 6 C -0.230 4.230 7 N -0.865 5.865 8 S 2.796 3.204 9 O -0.989 6.989 10 O -0.952 6.952 11 C -0.863 4.863 12 C -0.002 4.002 13 C -0.282 4.282 14 C -0.061 4.061 15 C -0.260 4.260 16 C 0.156 3.844 17 C -0.451 4.451 18 H 0.123 0.877 19 C -0.135 4.135 20 N -0.400 5.400 21 Si 0.743 3.257 22 H -0.193 1.193 23 H -0.214 1.214 24 H -0.164 1.164 25 C -0.203 4.203 26 C -0.198 4.198 27 C -0.200 4.200 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.254 0.746 35 H 0.130 0.870 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.585 7.492 3.504 11.921 hybrid contribution 0.683 -0.553 0.789 1.181 sum -7.902 6.939 4.292 11.358 Atomic orbital electron populations 1.23049 0.81985 1.02390 1.00015 1.87973 1.19043 1.25304 1.94252 1.22800 0.93057 0.83190 0.95501 1.20548 0.89774 0.94686 0.87405 0.88564 1.22294 1.03092 1.02138 0.95442 1.55546 1.43904 1.39454 1.47599 1.01113 0.72962 0.72450 0.73829 1.93445 1.86900 1.35044 1.83543 1.93560 1.84972 1.59186 1.57520 1.29941 1.26295 1.00527 1.29564 1.20388 0.92198 0.95635 0.92028 1.20464 1.03724 0.96790 1.07228 1.20804 0.96059 0.93262 0.95986 1.21241 1.02520 0.97596 1.04630 1.17019 0.89464 0.90791 0.87087 1.19869 0.99894 0.89734 1.35600 0.87657 1.26193 1.02029 0.94783 0.90513 1.69628 1.39510 0.99528 1.31321 0.86286 0.81455 0.79016 0.78906 1.19348 1.21450 1.16438 1.23611 0.98793 1.00217 0.97724 1.23323 0.97765 1.01923 0.96832 1.23549 0.98825 0.99937 0.97645 0.93576 0.93520 0.89921 0.90710 0.92629 0.91119 0.74589 0.86968 0.88247 0.88407 0.87488 0.89750 0.88445 0.90784 0.89161 0.91199 0.90669 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.17 101.05 0.93 1.16 16 2 O -0.35 -4.98 9.97 -35.23 -0.35 -5.33 16 3 C 0.10 1.29 1.07 -89.81 -0.10 1.20 16 4 C 0.18 2.90 2.49 -67.94 -0.17 2.74 16 5 H 0.10 1.47 7.42 -51.93 -0.39 1.08 16 6 C -0.17 -2.75 9.30 37.16 0.35 -2.40 16 7 N -1.11 -20.42 4.50 -4.90 -0.02 -20.44 16 8 S 2.70 58.64 4.93 -107.50 -0.53 58.11 16 9 O -1.00 -21.89 16.33 -57.17 -0.93 -22.82 16 10 O -0.96 -24.27 16.70 -57.17 -0.95 -25.23 16 11 C -0.77 -17.46 4.96 -38.87 -0.19 -17.66 16 12 C 0.02 0.36 9.53 -39.66 -0.38 -0.01 16 13 C -0.26 -5.22 10.05 -39.29 -0.39 -5.62 16 14 C -0.04 -0.87 10.02 -39.66 -0.40 -1.27 16 15 C -0.24 -5.49 7.11 -38.88 -0.28 -5.77 16 16 C 0.16 3.91 4.68 -106.83 -0.50 3.41 16 17 C -0.42 -10.83 8.18 -37.74 -0.31 -11.14 16 18 H 0.11 2.71 5.93 -52.49 -0.31 2.40 16 19 C 0.09 2.22 5.46 -17.34 -0.09 2.12 16 20 N -0.78 -19.68 13.93 55.55 0.77 -18.91 16 21 Si 0.92 20.29 24.41 -169.99 -4.15 16.14 16 22 H -0.27 -5.56 6.51 56.52 0.37 -5.19 16 23 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.24 -5.58 6.84 56.52 0.39 -5.19 16 25 C -0.17 -2.02 6.89 -25.92 -0.18 -2.20 16 26 C -0.16 -1.57 7.30 -25.92 -0.19 -1.75 16 27 C -0.16 -1.73 6.16 -25.92 -0.16 -1.89 16 28 H 0.05 0.42 5.85 -51.93 -0.30 0.12 16 29 H 0.05 0.45 5.86 -51.92 -0.30 0.14 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.36 6.62 -51.93 -0.34 1.01 16 32 H 0.05 0.74 7.60 -51.93 -0.39 0.35 16 33 H 0.07 1.22 8.01 -51.93 -0.42 0.80 16 34 H 0.42 7.67 8.06 -34.46 -0.28 7.40 16 35 H 0.11 2.16 7.33 -52.49 -0.38 1.77 16 36 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 37 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.11 2.39 4.23 -52.49 -0.22 2.17 16 39 H 0.29 6.64 8.30 -40.82 -0.34 6.30 16 40 H 0.10 1.22 8.04 -51.93 -0.42 0.80 16 41 H 0.07 0.90 7.48 -51.93 -0.39 0.51 16 42 H 0.09 0.78 4.83 -51.93 -0.25 0.53 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.77 7.48 -51.93 -0.39 0.38 16 45 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 357.14 15.07 5.38 5.38 Total: -1.00 -29.95 357.14 -8.93 -38.89 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -6.08 Total: 13.29 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: -2.06 Total: -39.08 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.75 Total: -39.35 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -2.24 Total: -53.38 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.15 Total: 16.14 kcal Atomic # 16 Polarization: 58.64 SS G_CDS: -0.53 Total: 58.11 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.95 -8.93 -38.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601441380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.223 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds