Wall clock time and date at job start Tue Mar 31 2020 23:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00085 * 2 1 4 4 C 1.53001 * 112.85103 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.47372 * 170.33459 * 4 3 2 6 6 C 1.53001 * 109.47129 * 50.33854 * 4 3 2 7 7 N 1.46499 * 109.47316 * 290.33732 * 4 3 2 8 8 S 1.65599 * 120.00088 * 214.72361 * 7 4 3 9 9 O 1.42100 * 106.40287 * 311.84498 * 8 7 4 10 10 O 1.42100 * 106.40259 * 178.92545 * 8 7 4 11 11 C 1.76205 * 107.21803 * 65.38264 * 8 7 4 12 12 C 1.37634 * 120.13056 * 244.80837 * 11 8 7 13 13 C 1.38607 * 120.25270 * 180.32073 * 12 11 8 14 14 C 1.38664 * 120.49636 * 359.67255 * 13 12 11 15 15 C 1.37597 * 120.24708 * 0.02562 * 14 13 12 16 16 C 1.40694 * 120.12474 * 64.50835 * 11 8 7 17 17 C 1.41400 * 120.24595 * 359.97438 * 16 11 8 18 18 H 1.08001 * 119.99419 * 335.17348 * 17 16 11 19 19 C 1.39947 * 119.99880 * 155.17622 * 17 16 11 20 20 N 1.30815 * 120.00277 * 331.58119 * 19 17 16 21 21 Si 1.86801 * 119.99743 * 151.57943 * 19 17 16 22 22 H 1.48500 * 109.47176 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.47197 * 300.00026 * 21 19 17 24 24 H 1.48501 * 109.46930 * 59.99655 * 21 19 17 25 25 C 1.53775 * 113.61735 * 311.20209 * 3 2 1 26 26 C 1.53953 * 87.02339 * 89.22874 * 25 3 2 27 27 C 1.53778 * 87.11007 * 25.36197 * 26 25 3 28 28 H 1.08998 * 109.47334 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47153 * 299.99548 * 1 2 3 30 30 H 1.09002 * 109.47348 * 59.99390 * 1 2 3 31 31 H 1.08997 * 109.46926 * 59.99581 * 6 4 3 32 32 H 1.08997 * 109.47296 * 179.97438 * 6 4 3 33 33 H 1.09004 * 109.47070 * 300.00323 * 6 4 3 34 34 H 0.97001 * 119.99739 * 34.72531 * 7 4 3 35 35 H 1.08008 * 119.87366 * 0.02562 * 12 11 8 36 36 H 1.07994 * 119.75629 * 179.69394 * 13 12 11 37 37 H 1.07998 * 119.87342 * 180.02562 * 14 13 12 38 38 H 1.08002 * 120.12175 * 180.02562 * 15 14 13 39 39 H 0.97001 * 119.99847 * 355.87750 * 20 19 17 40 40 H 1.09000 * 113.61449 * 203.74582 * 25 3 2 41 41 H 1.08997 * 113.61729 * 334.64392 * 25 3 2 42 42 H 1.09007 * 113.53332 * 270.81495 * 26 25 3 43 43 H 1.08998 * 113.74465 * 139.94442 * 26 25 3 44 44 H 1.09005 * 113.61622 * 220.09349 * 27 26 25 45 45 H 1.09001 * 113.61052 * 89.19283 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5399 1.2747 0.0006 5 1 3.9236 2.2803 -0.1719 6 6 4.0318 0.3438 -1.1095 7 7 4.0180 0.7852 1.2960 8 16 5.4174 1.3886 1.9439 9 8 6.3886 1.3505 0.9073 10 8 5.5918 0.7405 3.1965 11 6 5.1359 3.0913 2.2995 12 6 5.8423 4.0633 1.6283 13 6 5.6276 5.4032 1.9107 14 6 4.6959 5.7805 2.8659 15 6 3.9738 4.8260 3.5448 16 6 4.1835 3.4626 3.2663 17 6 3.4469 2.4731 3.9573 18 1 3.2957 1.5017 3.5100 19 6 2.9139 2.7523 5.2208 20 7 3.4990 3.6259 5.9991 21 14 1.3667 1.8777 5.7959 22 1 1.0107 2.3465 7.1592 23 1 0.2520 2.1781 4.8618 24 1 1.6078 0.4126 5.8239 25 6 1.4129 2.2457 -1.0601 26 6 0.3746 2.6522 0.0014 27 6 1.4130 2.2456 1.0603 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 3.6760 0.7080 -2.0732 32 1 5.1215 0.3222 -1.1094 33 1 3.6480 -0.6618 -0.9370 34 1 3.5148 0.1077 1.7741 35 1 6.5701 3.7807 0.8820 36 1 6.1899 6.1590 1.3827 37 1 4.5364 6.8274 3.0776 38 1 3.2484 5.1222 4.2881 39 1 4.3346 4.0358 5.7259 40 1 2.0808 3.0567 -1.3504 41 1 0.9834 1.7233 -1.9149 42 1 -0.5170 2.0250 0.0008 43 1 0.1429 3.7173 0.0035 44 1 0.9834 1.7230 1.9151 45 1 2.0809 3.0566 1.3508 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601441381.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:38 Heat of formation + Delta-G solvation = -81.081327 kcal Electronic energy + Delta-G solvation = -29944.546556 eV Core-core repulsion = 26054.580940 eV Total energy + Delta-G solvation = -3889.965616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.49503 -37.83788 -36.29494 -35.42522 -34.84557 -34.54363 -34.13106 -30.26176 -29.71519 -29.41560 -27.38311 -25.53952 -25.37522 -24.35342 -21.82313 -21.36804 -21.12452 -19.88312 -18.64690 -18.28581 -16.97073 -16.55680 -16.10213 -15.90203 -15.08923 -15.00762 -14.87149 -14.43625 -14.18153 -13.75063 -13.46123 -13.42836 -13.34792 -13.09036 -12.64797 -12.41671 -12.22633 -12.17583 -12.02595 -11.82796 -11.64658 -11.26063 -11.19780 -11.18626 -11.14148 -11.06555 -10.98593 -10.66759 -10.55095 -10.51878 -10.32724 -10.00342 -9.88730 -9.45070 -9.28089 -9.22961 -8.76668 -8.23141 -7.86914 -7.55192 -4.85923 1.52198 2.22980 2.63746 3.02554 3.13426 3.20930 3.73328 3.81579 3.87757 4.27892 4.59319 4.69135 4.69806 4.83756 5.00181 5.11651 5.24775 5.34693 5.40083 5.51682 5.59779 5.63006 5.66824 5.74808 5.86900 5.91828 5.92539 5.99112 6.04749 6.07626 6.16780 6.28805 6.30943 6.44869 6.56482 6.60379 6.66369 6.88712 7.08404 7.27147 7.34983 7.37675 7.47568 7.62323 7.66711 7.78653 7.96075 8.32937 8.54341 9.70504 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009390 B = 0.006938 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.029946 B = 4034.661796 C = 5100.108106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.355 6.355 3 C 0.092 3.908 4 C 0.188 3.812 5 H 0.093 0.907 6 C -0.167 4.167 7 N -1.111 6.111 8 S 2.699 3.301 9 O -0.997 6.997 10 O -0.967 6.967 11 C -0.786 4.786 12 C 0.014 3.986 13 C -0.269 4.269 14 C -0.054 4.054 15 C -0.215 4.215 16 C 0.164 3.836 17 C -0.488 4.488 18 H 0.089 0.911 19 C 0.045 3.955 20 N -0.764 5.764 21 Si 1.057 2.943 22 H -0.270 1.270 23 H -0.269 1.269 24 H -0.268 1.268 25 C -0.160 4.160 26 C -0.163 4.163 27 C -0.155 4.155 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.415 0.585 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.305 0.695 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.008 -2.579 -9.639 12.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.273 6.273 3 C 0.051 3.949 4 C 0.080 3.920 5 H 0.111 0.889 6 C -0.226 4.226 7 N -0.867 5.867 8 S 2.796 3.204 9 O -0.988 6.988 10 O -0.958 6.958 11 C -0.881 4.881 12 C -0.005 4.005 13 C -0.289 4.289 14 C -0.073 4.073 15 C -0.235 4.235 16 C 0.159 3.841 17 C -0.514 4.514 18 H 0.107 0.893 19 C -0.181 4.181 20 N -0.384 5.384 21 Si 0.879 3.121 22 H -0.195 1.195 23 H -0.194 1.194 24 H -0.193 1.193 25 C -0.199 4.199 26 C -0.200 4.200 27 C -0.192 4.192 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.249 0.751 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.127 0.873 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.039 -3.197 -8.303 11.991 hybrid contribution 0.279 0.973 -0.995 1.420 sum -7.760 -2.224 -9.298 12.314 Atomic orbital electron populations 1.23036 0.81927 1.02079 1.00394 1.87886 1.19159 1.25819 1.94423 1.22835 0.92735 0.83035 0.96319 1.20450 0.90095 0.98038 0.83445 0.88866 1.22236 1.02227 1.00659 0.97443 1.55669 1.46089 1.55203 1.29755 1.01133 0.72024 0.74716 0.72489 1.93448 1.58363 1.88042 1.58917 1.93542 1.84552 1.75394 1.42294 1.29791 1.17237 1.20576 1.20490 1.20321 0.93572 0.92840 0.93816 1.20411 1.07035 0.94990 1.06473 1.20806 0.94597 0.97399 0.94472 1.21289 1.04148 0.93099 1.04945 1.16913 0.86391 0.92499 0.88251 1.20898 1.27186 1.00255 1.03110 0.89312 1.27108 1.02594 0.95216 0.93180 1.70460 1.15382 1.16855 1.35733 0.83752 0.73887 0.76988 0.77497 1.19465 1.19427 1.19251 1.23562 0.99158 0.99811 0.97346 1.23360 0.97704 1.02003 0.96967 1.23548 0.98378 1.00244 0.97045 0.90196 0.93147 0.93618 0.92245 0.91286 0.91534 0.75146 0.87385 0.88689 0.88811 0.87300 0.88146 0.88910 0.91005 0.89416 0.91228 0.90479 0.87681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.17 101.05 0.93 1.16 16 2 O -0.35 -4.85 9.94 -35.23 -0.35 -5.20 16 3 C 0.09 1.29 1.03 -89.81 -0.09 1.19 16 4 C 0.19 2.93 2.40 -67.93 -0.16 2.77 16 5 H 0.09 1.48 7.71 -51.92 -0.40 1.08 16 6 C -0.17 -2.37 9.28 37.16 0.34 -2.03 16 7 N -1.11 -19.80 4.40 -4.89 -0.02 -19.82 16 8 S 2.70 58.55 4.86 -107.50 -0.52 58.03 16 9 O -1.00 -22.41 16.19 -57.17 -0.93 -23.33 16 10 O -0.97 -24.19 16.54 -57.17 -0.95 -25.13 16 11 C -0.79 -18.01 5.82 -38.87 -0.23 -18.24 16 12 C 0.01 0.31 9.53 -39.67 -0.38 -0.06 16 13 C -0.27 -5.63 10.05 -39.29 -0.39 -6.02 16 14 C -0.05 -1.15 10.02 -39.66 -0.40 -1.54 16 15 C -0.22 -4.98 8.01 -38.88 -0.31 -5.30 16 16 C 0.16 3.93 5.18 -106.83 -0.55 3.37 16 17 C -0.49 -11.59 7.67 -37.74 -0.29 -11.88 16 18 H 0.09 2.02 5.65 -52.49 -0.30 1.72 16 19 C 0.05 1.06 4.87 -17.34 -0.08 0.98 16 20 N -0.76 -18.86 12.37 55.55 0.69 -18.17 16 21 Si 1.06 19.95 30.02 -169.99 -5.10 14.85 16 22 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 23 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 24 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 25 C -0.16 -1.90 6.88 -25.83 -0.18 -2.08 16 26 C -0.16 -1.95 7.30 -25.83 -0.19 -2.14 16 27 C -0.15 -2.31 6.68 -25.92 -0.17 -2.49 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.54 5.86 -51.93 -0.30 0.24 16 30 H 0.05 0.43 5.86 -51.93 -0.30 0.12 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.06 7.61 -51.93 -0.40 0.67 16 33 H 0.07 0.93 7.64 -51.93 -0.40 0.53 16 34 H 0.41 7.00 8.54 -34.47 -0.29 6.71 16 35 H 0.11 2.20 7.33 -52.48 -0.38 1.82 16 36 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 37 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.11 2.55 6.55 -52.49 -0.34 2.21 16 39 H 0.30 7.78 6.82 -40.82 -0.28 7.51 16 40 H 0.09 1.07 7.99 -51.93 -0.41 0.66 16 41 H 0.07 0.76 7.48 -51.93 -0.39 0.37 16 42 H 0.09 0.91 4.83 -51.92 -0.25 0.66 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.08 1.20 7.48 -51.93 -0.39 0.81 16 45 H 0.10 1.82 7.98 -51.93 -0.41 1.41 16 LS Contribution 365.38 15.07 5.51 5.51 Total: -1.00 -28.93 365.38 -10.00 -38.93 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -6.16 Total: 16.64 kcal Atomic # 6 Polarization: -40.15 SS G_CDS: -2.16 Total: -42.31 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.67 Total: -37.99 kcal Atomic # 8 Polarization: -51.44 SS G_CDS: -2.22 Total: -53.66 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.10 Total: 14.85 kcal Atomic # 16 Polarization: 58.55 SS G_CDS: -0.52 Total: 58.03 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.93 -10.00 -38.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601441381.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.151 kcal (2) G-P(sol) polarization free energy of solvation -28.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds