Wall clock time and date at job start Tue Mar 31 2020 23:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00085 * 2 1 4 4 C 1.53001 * 112.85103 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.47372 * 170.33459 * 4 3 2 6 6 C 1.53001 * 109.47129 * 50.33854 * 4 3 2 7 7 N 1.46499 * 109.47316 * 290.33732 * 4 3 2 8 8 S 1.65599 * 120.00088 * 214.72361 * 7 4 3 9 9 O 1.42100 * 106.40287 * 311.84498 * 8 7 4 10 10 O 1.42100 * 106.40259 * 178.92545 * 8 7 4 11 11 C 1.76205 * 107.21803 * 65.38264 * 8 7 4 12 12 C 1.37634 * 120.13056 * 244.80837 * 11 8 7 13 13 C 1.38607 * 120.25270 * 180.32073 * 12 11 8 14 14 C 1.38664 * 120.49636 * 359.67255 * 13 12 11 15 15 C 1.37597 * 120.24708 * 0.02562 * 14 13 12 16 16 C 1.40694 * 120.12474 * 64.50835 * 11 8 7 17 17 C 1.41400 * 120.24595 * 359.97438 * 16 11 8 18 18 H 1.08001 * 119.99419 * 335.17348 * 17 16 11 19 19 C 1.39947 * 119.99880 * 155.17622 * 17 16 11 20 20 N 1.30815 * 120.00277 * 331.58119 * 19 17 16 21 21 Si 1.86801 * 119.99743 * 151.57943 * 19 17 16 22 22 H 1.48500 * 109.47176 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.47197 * 300.00026 * 21 19 17 24 24 H 1.48501 * 109.46930 * 59.99655 * 21 19 17 25 25 C 1.53775 * 113.61735 * 311.20209 * 3 2 1 26 26 C 1.53953 * 87.02339 * 89.22874 * 25 3 2 27 27 C 1.53778 * 87.11007 * 25.36197 * 26 25 3 28 28 H 1.08998 * 109.47334 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47153 * 299.99548 * 1 2 3 30 30 H 1.09002 * 109.47348 * 59.99390 * 1 2 3 31 31 H 1.08997 * 109.46926 * 59.99581 * 6 4 3 32 32 H 1.08997 * 109.47296 * 179.97438 * 6 4 3 33 33 H 1.09004 * 109.47070 * 300.00323 * 6 4 3 34 34 H 0.97001 * 119.99739 * 34.72531 * 7 4 3 35 35 H 1.08008 * 119.87366 * 0.02562 * 12 11 8 36 36 H 1.07994 * 119.75629 * 179.69394 * 13 12 11 37 37 H 1.07998 * 119.87342 * 180.02562 * 14 13 12 38 38 H 1.08002 * 120.12175 * 180.02562 * 15 14 13 39 39 H 0.97001 * 119.99847 * 355.87750 * 20 19 17 40 40 H 1.09000 * 113.61449 * 203.74582 * 25 3 2 41 41 H 1.08997 * 113.61729 * 334.64392 * 25 3 2 42 42 H 1.09007 * 113.53332 * 270.81495 * 26 25 3 43 43 H 1.08998 * 113.74465 * 139.94442 * 26 25 3 44 44 H 1.09005 * 113.61622 * 220.09349 * 27 26 25 45 45 H 1.09001 * 113.61052 * 89.19283 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5399 1.2747 0.0006 5 1 3.9236 2.2803 -0.1719 6 6 4.0318 0.3438 -1.1095 7 7 4.0180 0.7852 1.2960 8 16 5.4174 1.3886 1.9439 9 8 6.3886 1.3505 0.9073 10 8 5.5918 0.7405 3.1965 11 6 5.1359 3.0913 2.2995 12 6 5.8423 4.0633 1.6283 13 6 5.6276 5.4032 1.9107 14 6 4.6959 5.7805 2.8659 15 6 3.9738 4.8260 3.5448 16 6 4.1835 3.4626 3.2663 17 6 3.4469 2.4731 3.9573 18 1 3.2957 1.5017 3.5100 19 6 2.9139 2.7523 5.2208 20 7 3.4990 3.6259 5.9991 21 14 1.3667 1.8777 5.7959 22 1 1.0107 2.3465 7.1592 23 1 0.2520 2.1781 4.8618 24 1 1.6078 0.4126 5.8239 25 6 1.4129 2.2457 -1.0601 26 6 0.3746 2.6522 0.0014 27 6 1.4130 2.2456 1.0603 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 3.6760 0.7080 -2.0732 32 1 5.1215 0.3222 -1.1094 33 1 3.6480 -0.6618 -0.9370 34 1 3.5148 0.1077 1.7741 35 1 6.5701 3.7807 0.8820 36 1 6.1899 6.1590 1.3827 37 1 4.5364 6.8274 3.0776 38 1 3.2484 5.1222 4.2881 39 1 4.3346 4.0358 5.7259 40 1 2.0808 3.0567 -1.3504 41 1 0.9834 1.7233 -1.9149 42 1 -0.5170 2.0250 0.0008 43 1 0.1429 3.7173 0.0035 44 1 0.9834 1.7230 1.9151 45 1 2.0809 3.0566 1.3508 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601441381.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:37 Heat of formation + Delta-G solvation = -99.395145 kcal Electronic energy + Delta-G solvation = -29945.340702 eV Core-core repulsion = 26054.580940 eV Total energy + Delta-G solvation = -3890.759763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.54108 -39.58736 -38.09814 -36.72322 -36.66336 -35.89574 -35.60976 -32.00209 -31.31691 -30.88743 -28.31122 -27.18670 -26.55782 -25.37843 -23.56489 -23.01603 -22.40959 -20.97916 -20.29527 -19.99840 -18.54257 -18.01677 -17.67892 -17.05328 -16.63171 -16.46177 -15.99894 -15.84501 -15.73343 -15.43841 -15.07839 -14.58480 -14.45234 -14.36902 -14.28977 -14.01459 -13.62935 -13.40400 -13.14752 -13.09667 -13.02138 -12.96488 -12.84971 -12.80660 -12.77004 -12.57422 -12.32049 -12.23119 -12.03188 -11.62620 -11.61805 -11.45941 -11.22467 -11.00484 -10.89261 -10.28062 -10.19292 -9.98749 -9.64831 -9.37441 -6.67891 -0.19105 0.45718 0.89532 1.46709 1.60364 1.73559 2.25249 2.28237 2.54959 2.73865 2.98954 3.34625 3.57235 3.61190 3.67718 3.82847 3.95916 4.15366 4.24322 4.34913 4.41235 4.48065 4.55572 4.60188 4.65016 4.66465 4.83899 4.85270 4.86062 4.89343 5.00153 5.07503 5.09742 5.11534 5.17922 5.27240 5.29541 5.41406 5.47901 5.51120 5.62749 5.67522 5.87320 5.99756 6.17439 6.21968 6.37185 6.55871 6.76864 7.84997 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009390 B = 0.006938 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.029946 B = 4034.661796 C = 5100.108106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.369 6.369 3 C 0.096 3.904 4 C 0.177 3.823 5 H 0.087 0.913 6 C -0.161 4.161 7 N -1.101 6.101 8 S 2.715 3.285 9 O -1.007 7.007 10 O -1.006 7.006 11 C -0.799 4.799 12 C 0.001 3.999 13 C -0.264 4.264 14 C -0.052 4.052 15 C -0.236 4.236 16 C 0.152 3.848 17 C -0.510 4.510 18 H 0.091 0.909 19 C 0.013 3.987 20 N -0.787 5.787 21 Si 1.095 2.905 22 H -0.270 1.270 23 H -0.246 1.246 24 H -0.259 1.259 25 C -0.151 4.151 26 C -0.152 4.152 27 C -0.165 4.165 28 H 0.097 0.903 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.419 0.581 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.099 0.901 39 H 0.288 0.712 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.635 -2.591 -11.681 15.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.287 6.287 3 C 0.054 3.946 4 C 0.070 3.930 5 H 0.105 0.895 6 C -0.220 4.220 7 N -0.860 5.860 8 S 2.812 3.188 9 O -0.997 6.997 10 O -0.996 6.996 11 C -0.893 4.893 12 C -0.019 4.019 13 C -0.284 4.284 14 C -0.071 4.071 15 C -0.256 4.256 16 C 0.147 3.853 17 C -0.536 4.536 18 H 0.108 0.892 19 C -0.208 4.208 20 N -0.408 5.408 21 Si 0.911 3.089 22 H -0.194 1.194 23 H -0.170 1.170 24 H -0.184 1.184 25 C -0.189 4.189 26 C -0.189 4.189 27 C -0.203 4.203 28 H 0.115 0.885 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.254 0.746 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.126 0.874 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.657 -3.195 -10.362 14.520 hybrid contribution 0.852 1.013 -0.469 1.405 sum -8.805 -2.182 -10.831 14.128 Atomic orbital electron populations 1.23255 0.80247 1.03560 1.01118 1.87862 1.20993 1.25332 1.94547 1.22718 0.91411 0.83562 0.96911 1.20723 0.91761 0.98011 0.82471 0.89515 1.22191 1.01189 1.00584 0.98068 1.55326 1.45116 1.54890 1.30623 1.00476 0.72546 0.74129 0.71643 1.93425 1.59410 1.88069 1.58797 1.93484 1.85614 1.76090 1.44440 1.30000 1.17158 1.21561 1.20587 1.20618 0.93800 0.93328 0.94176 1.20810 1.06444 0.95356 1.05816 1.21155 0.93718 0.98585 0.93624 1.21331 1.05042 0.93491 1.05688 1.17138 0.86561 0.93053 0.88578 1.21024 1.28366 1.00570 1.03639 0.89159 1.28361 1.04369 0.94895 0.93171 1.70572 1.15282 1.18697 1.36249 0.83329 0.71604 0.76418 0.77549 1.19433 1.16987 1.18376 1.23527 0.98738 0.99187 0.97429 1.23365 0.97748 1.02592 0.95223 1.23499 0.99310 0.99803 0.97731 0.88502 0.93407 0.91787 0.89653 0.92827 0.91239 0.74587 0.86060 0.85513 0.85904 0.88325 0.89916 0.88785 0.88824 0.87361 0.90989 0.91685 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.17 113.37 1.04 1.29 16 2 O -0.37 -9.27 9.94 -148.98 -1.48 -10.75 16 3 C 0.10 2.52 1.03 -10.27 -0.01 2.51 16 4 C 0.18 5.40 2.40 44.99 0.11 5.50 16 5 H 0.09 2.73 7.71 -2.38 -0.02 2.71 16 6 C -0.16 -4.34 9.28 71.98 0.67 -3.67 16 7 N -1.10 -39.47 4.40 -169.38 -0.75 -40.22 16 8 S 2.72 119.86 4.86 -56.49 -0.27 119.59 16 9 O -1.01 -45.42 16.19 -128.00 -2.07 -47.49 16 10 O -1.01 -51.79 16.54 -128.00 -2.12 -53.91 16 11 C -0.80 -37.13 5.82 22.73 0.13 -37.00 16 12 C 0.00 0.02 9.53 22.21 0.21 0.23 16 13 C -0.26 -10.63 10.05 22.46 0.23 -10.41 16 14 C -0.05 -2.17 10.02 22.22 0.22 -1.95 16 15 C -0.24 -11.12 8.01 22.73 0.18 -10.94 16 16 C 0.15 7.42 5.18 -21.29 -0.11 7.31 16 17 C -0.51 -24.91 7.67 23.46 0.18 -24.73 16 18 H 0.09 4.25 5.65 -2.91 -0.02 4.23 16 19 C 0.01 0.61 4.87 85.26 0.41 1.03 16 20 N -0.79 -40.20 12.37 21.83 0.27 -39.93 16 21 Si 1.09 40.30 30.02 68.60 2.06 42.36 16 22 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 23 H -0.25 -8.06 7.11 99.48 0.71 -7.36 16 24 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 25 C -0.15 -3.14 6.88 31.18 0.21 -2.93 16 26 C -0.15 -3.29 7.30 31.18 0.23 -3.06 16 27 C -0.17 -4.86 6.68 31.12 0.21 -4.65 16 28 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 0.90 5.86 -2.39 -0.01 0.89 16 30 H 0.06 0.94 5.86 -2.39 -0.01 0.93 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.60 7.61 -2.39 -0.02 1.58 16 33 H 0.07 1.82 7.64 -2.38 -0.02 1.80 16 34 H 0.42 14.33 8.54 -96.74 -0.83 13.50 16 35 H 0.12 4.83 7.33 -2.91 -0.02 4.81 16 36 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 37 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 38 H 0.10 4.79 6.55 -2.91 -0.02 4.77 16 39 H 0.29 15.43 6.82 -92.71 -0.63 14.80 16 40 H 0.09 1.95 7.99 -2.39 -0.02 1.93 16 41 H 0.09 1.58 7.48 -2.39 -0.02 1.56 16 42 H 0.11 1.89 4.83 -2.38 -0.01 1.88 16 43 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.06 2.01 7.48 -2.38 -0.02 2.00 16 45 H 0.07 2.65 7.98 -2.39 -0.02 2.63 16 Total: -1.00 -63.31 365.38 -0.12 -63.42 By element: Atomic # 1 Polarization: 48.06 SS G_CDS: 0.33 Total: 48.39 kcal Atomic # 6 Polarization: -85.38 SS G_CDS: 3.91 Total: -81.47 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -0.48 Total: -80.15 kcal Atomic # 8 Polarization: -106.48 SS G_CDS: -5.67 Total: -112.15 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.06 Total: 42.36 kcal Atomic # 16 Polarization: 119.86 SS G_CDS: -0.27 Total: 119.59 kcal Total: -63.31 -0.12 -63.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601441381.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.972 kcal (2) G-P(sol) polarization free energy of solvation -63.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds