Wall clock time and date at job start Tue Mar 31 2020 23:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.70116 * 2 1 4 4 C 1.53197 * 109.58623 * 120.35520 * 2 1 3 5 5 H 1.08999 * 109.49570 * 185.10112 * 4 2 1 6 6 C 1.52997 * 109.49685 * 305.20262 * 4 2 1 7 7 O 1.42903 * 109.46839 * 185.00426 * 6 4 2 8 8 C 1.53037 * 109.31097 * 65.15068 * 4 2 1 9 9 C 1.53045 * 109.53866 * 61.36768 * 8 4 2 10 10 C 1.53195 * 109.30924 * 298.63101 * 9 8 4 11 11 N 1.46926 * 109.58592 * 239.64386 * 2 1 3 12 12 S 1.65596 * 120.63060 * 113.54772 * 11 2 1 13 13 O 1.42098 * 106.40329 * 195.06077 * 12 11 2 14 14 O 1.42102 * 106.39921 * 327.97662 * 12 11 2 15 15 C 1.76199 * 107.21942 * 81.51790 * 12 11 2 16 16 C 1.37638 * 120.12509 * 246.35191 * 15 12 11 17 17 C 1.38622 * 120.24373 * 179.69752 * 16 15 12 18 18 C 1.38654 * 120.49954 * 0.60362 * 17 16 15 19 19 C 1.37599 * 120.25125 * 359.67306 * 18 17 16 20 20 C 1.40698 * 120.12844 * 66.62514 * 15 12 11 21 21 C 1.41398 * 120.24269 * 0.02562 * 20 15 12 22 22 H 1.08005 * 120.00095 * 27.28702 * 21 20 15 23 23 C 1.39948 * 120.00030 * 207.28234 * 21 20 15 24 24 N 1.30823 * 119.99788 * 15.73246 * 23 21 20 25 25 Si 1.86794 * 119.99777 * 195.72565 * 23 21 20 26 26 H 1.48506 * 109.47151 * 90.00506 * 25 23 21 27 27 H 1.48505 * 109.46943 * 209.99736 * 25 23 21 28 28 H 1.48492 * 109.47468 * 330.00129 * 25 23 21 29 29 H 1.09001 * 109.47123 * 180.35728 * 1 2 3 30 30 H 1.09003 * 109.46967 * 300.35479 * 1 2 3 31 31 H 1.09004 * 109.47498 * 60.35409 * 1 2 3 32 32 H 1.09008 * 109.46960 * 304.99817 * 6 4 2 33 33 H 1.08996 * 109.47246 * 64.99771 * 6 4 2 34 34 H 0.96705 * 113.99525 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.46144 * 181.38408 * 8 4 2 36 36 H 1.09000 * 109.46522 * 301.35805 * 8 4 2 37 37 H 1.08996 * 109.49677 * 58.58329 * 9 8 4 38 38 H 1.09000 * 109.49952 * 178.65267 * 9 8 4 39 39 H 1.09004 * 109.58509 * 294.84643 * 10 9 8 40 40 H 1.09002 * 109.58172 * 174.42376 * 10 9 8 41 41 H 1.07998 * 119.88123 * 359.97438 * 16 15 12 42 42 H 1.08001 * 119.74674 * 180.29451 * 17 16 15 43 43 H 1.08004 * 119.87166 * 179.70248 * 18 17 16 44 44 H 1.07995 * 120.12641 * 180.02562 * 19 18 17 45 45 H 0.96996 * 119.99927 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 1.2455 5 1 3.1297 -0.6504 1.2913 6 6 1.4314 -0.0964 2.4967 7 8 1.9988 -0.6992 3.6615 8 6 1.6414 -2.2041 1.1702 9 6 2.2800 -2.8464 -0.0635 10 6 1.7691 -2.1410 -1.3237 11 7 2.0225 -0.6996 -1.1945 12 16 2.8417 0.1223 -2.3759 13 8 2.8615 -0.7266 -3.5152 14 8 2.3041 1.4376 -2.3960 15 6 4.5134 0.2762 -1.8408 16 6 5.0325 1.5160 -1.5443 17 6 6.3455 1.6392 -1.1172 18 6 7.1540 0.5194 -0.9955 19 6 6.6578 -0.7293 -1.2919 20 6 5.3244 -0.8672 -1.7205 21 6 4.8038 -2.1453 -2.0283 22 1 3.9981 -2.2429 -2.7409 23 6 5.3327 -3.2838 -1.4098 24 7 6.0769 -3.1614 -0.3409 25 14 4.9758 -4.9782 -2.1105 26 1 6.0227 -5.3346 -3.1016 27 1 4.9734 -5.9776 -1.0121 28 1 3.6477 -4.9695 -2.7748 29 1 -0.3633 -1.0276 0.0064 30 1 -0.3633 0.5193 0.8868 31 1 -0.3634 0.5083 -0.8932 32 1 1.6410 0.9733 2.5024 33 1 0.3531 -0.2553 2.4938 34 1 1.6563 -0.3454 4.4938 35 1 1.9843 -2.7203 2.0669 36 1 0.5564 -2.2815 1.0991 37 1 3.3639 -2.7474 -0.0052 38 1 2.0127 -3.9024 -0.1034 39 1 0.6985 -2.3157 -1.4316 40 1 2.2943 -2.5275 -2.1971 41 1 4.4133 2.3956 -1.6406 42 1 6.7431 2.6155 -0.8822 43 1 8.1769 0.6277 -0.6664 44 1 7.2892 -1.6002 -1.1960 45 1 6.4432 -3.9505 0.0880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601441829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:36 Heat of formation + Delta-G solvation = -114.375104 kcal Electronic energy + Delta-G solvation = -30256.004320 eV Core-core repulsion = 26364.594977 eV Total energy + Delta-G solvation = -3891.409342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.09120 -37.58050 -36.43245 -36.28943 -34.88163 -33.95650 -32.24242 -31.93981 -30.21760 -29.54319 -27.67334 -25.75669 -25.24979 -22.96326 -21.80992 -21.50306 -21.09625 -19.00538 -17.90114 -17.64721 -17.31618 -17.11335 -15.96093 -15.48572 -15.11953 -15.00611 -14.43700 -14.29476 -14.11411 -13.94217 -13.35146 -13.27838 -13.03091 -12.82939 -12.75612 -12.63961 -12.14953 -11.99739 -11.86380 -11.59273 -11.34197 -11.27810 -11.17969 -11.16680 -11.08701 -10.94632 -10.64165 -10.61866 -10.53546 -10.27445 -10.07065 -9.91542 -9.81211 -9.65312 -9.35150 -9.15983 -8.33276 -7.99329 -7.61107 -7.08532 -4.76449 1.50297 2.35688 2.71871 2.95670 3.00333 3.10073 3.74263 3.80942 4.35194 4.37816 4.77034 4.92600 5.11073 5.25264 5.31887 5.39165 5.48213 5.51293 5.54532 5.65026 5.67886 5.82467 5.90556 6.00910 6.05187 6.10692 6.14267 6.23003 6.24130 6.36925 6.39879 6.46444 6.65315 6.70066 6.75472 6.87135 6.96553 7.07732 7.10756 7.29985 7.35453 7.53063 7.69051 7.72824 7.82223 7.95521 8.35708 8.50453 8.66612 9.84589 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009340 B = 0.007133 C = 0.006041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.276601 B = 3924.539268 C = 4634.106277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.164 3.836 3 H 0.089 0.911 4 C -0.096 4.096 5 H 0.091 0.909 6 C 0.081 3.919 7 O -0.569 6.569 8 C -0.100 4.100 9 C -0.145 4.145 10 C 0.127 3.873 11 N -0.985 5.985 12 S 2.702 3.298 13 O -0.973 6.973 14 O -0.996 6.996 15 C -0.778 4.778 16 C -0.003 4.003 17 C -0.250 4.250 18 C -0.077 4.077 19 C -0.159 4.159 20 C 0.193 3.807 21 C -0.470 4.470 22 H 0.116 0.884 23 C 0.086 3.914 24 N -0.770 5.770 25 Si 0.897 3.103 26 H -0.264 1.264 27 H -0.273 1.273 28 H -0.250 1.250 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.047 0.953 34 H 0.373 0.627 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.121 0.879 45 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.893 0.193 5.859 9.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.057 3.943 3 H 0.107 0.893 4 C -0.116 4.116 5 H 0.109 0.891 6 C 0.003 3.997 7 O -0.374 6.374 8 C -0.138 4.138 9 C -0.184 4.184 10 C 0.002 3.998 11 N -0.820 5.820 12 S 2.802 3.198 13 O -0.964 6.964 14 O -0.987 6.987 15 C -0.873 4.873 16 C -0.023 4.023 17 C -0.271 4.271 18 C -0.095 4.095 19 C -0.179 4.179 20 C 0.188 3.812 21 C -0.498 4.498 22 H 0.133 0.867 23 C -0.136 4.136 24 N -0.392 5.392 25 Si 0.721 3.279 26 H -0.188 1.188 27 H -0.198 1.198 28 H -0.173 1.173 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.218 0.782 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.139 0.861 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.859 0.003 4.766 9.192 hybrid contribution 0.451 -0.479 0.854 1.078 sum -7.408 -0.476 5.620 9.311 Atomic orbital electron populations 1.22241 0.95652 1.02447 1.01965 1.20612 0.93865 0.95400 0.84384 0.89259 1.21472 1.02388 0.96088 0.91642 0.89110 1.22298 0.96083 0.95734 0.85598 1.86545 1.69028 1.65891 1.15890 1.21403 0.99363 0.94559 0.98431 1.22063 1.04297 0.97964 0.94058 1.21412 0.99451 0.79175 0.99804 1.57695 1.71105 1.17816 1.35350 1.01050 0.74097 0.71753 0.72948 1.93460 1.87855 1.67546 1.47550 1.93434 1.79540 1.38757 1.86984 1.29822 1.21992 1.00222 1.35292 1.20225 0.95021 0.94593 0.92418 1.20467 0.95685 0.97023 1.13916 1.20881 0.97521 0.93634 0.97512 1.21465 0.95969 0.95852 1.04572 1.16965 0.90313 0.90262 0.83624 1.20514 1.17821 0.90310 1.21157 0.86691 1.25941 0.92650 1.01898 0.93120 1.69817 1.23068 1.33107 1.13243 0.86438 0.81280 0.80284 0.79947 1.18834 1.19768 1.17316 0.91778 0.91959 0.92090 0.93777 0.93535 0.78167 0.91811 0.92768 0.88132 0.92257 0.92827 0.88236 0.87634 0.88856 0.88968 0.86084 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 8.51 37.16 0.32 -1.81 16 2 C 0.16 2.63 2.71 -67.60 -0.18 2.45 16 3 H 0.09 1.47 7.38 -51.93 -0.38 1.09 16 4 C -0.10 -1.51 2.36 -90.50 -0.21 -1.72 16 5 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 6 C 0.08 1.02 5.76 37.16 0.21 1.24 16 7 O -0.57 -7.46 13.18 -35.23 -0.46 -7.92 16 8 C -0.10 -1.52 4.87 -26.69 -0.13 -1.65 16 9 C -0.15 -2.47 5.96 -26.61 -0.16 -2.63 16 10 C 0.13 2.21 5.09 -3.71 -0.02 2.20 16 11 N -0.99 -18.31 2.99 -106.47 -0.32 -18.63 16 12 S 2.70 59.48 5.05 -107.50 -0.54 58.94 16 13 O -0.97 -23.39 14.33 -57.17 -0.82 -24.21 16 14 O -1.00 -22.64 16.00 -57.17 -0.91 -23.56 16 15 C -0.78 -18.50 5.97 -38.87 -0.23 -18.73 16 16 C 0.00 -0.06 9.54 -39.66 -0.38 -0.44 16 17 C -0.25 -5.51 10.05 -39.29 -0.39 -5.90 16 18 C -0.08 -1.72 10.02 -39.66 -0.40 -2.12 16 19 C -0.16 -3.88 8.67 -38.87 -0.34 -4.22 16 20 C 0.19 4.80 5.55 -106.82 -0.59 4.21 16 21 C -0.47 -11.24 6.07 -37.74 -0.23 -11.47 16 22 H 0.12 2.78 3.70 -52.48 -0.19 2.58 16 23 C 0.09 1.92 3.76 -17.34 -0.07 1.85 16 24 N -0.77 -17.50 11.02 55.55 0.61 -16.89 16 25 Si 0.90 17.19 29.59 -169.99 -5.03 12.16 16 26 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 27 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 28 H -0.25 -4.70 7.11 56.52 0.40 -4.29 16 29 H 0.06 0.78 5.72 -51.93 -0.30 0.48 16 30 H 0.06 0.66 6.52 -51.93 -0.34 0.32 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.52 8.14 -51.92 -0.42 0.09 16 33 H 0.05 0.49 6.68 -51.93 -0.35 0.15 16 34 H 0.37 2.95 9.12 45.56 0.42 3.37 16 35 H 0.06 1.01 7.79 -51.93 -0.40 0.60 16 36 H 0.05 0.72 6.49 -51.93 -0.34 0.38 16 37 H 0.10 2.02 5.57 -51.93 -0.29 1.73 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.80 7.50 -51.93 -0.39 0.41 16 40 H 0.10 1.92 5.01 -51.93 -0.26 1.66 16 41 H 0.11 2.23 7.32 -52.49 -0.38 1.85 16 42 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 43 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 44 H 0.12 2.98 6.30 -52.49 -0.33 2.65 16 45 H 0.29 5.98 8.30 -40.82 -0.34 5.64 16 LS Contribution 350.45 15.07 5.28 5.28 Total: -1.00 -29.03 350.45 -10.21 -39.24 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -5.21 Total: 14.33 kcal Atomic # 6 Polarization: -35.95 SS G_CDS: -2.80 Total: -38.75 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.29 Total: -35.52 kcal Atomic # 8 Polarization: -53.49 SS G_CDS: -2.20 Total: -55.69 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Atomic # 16 Polarization: 59.48 SS G_CDS: -0.54 Total: 58.94 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.03 -10.21 -39.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601441829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.136 kcal (2) G-P(sol) polarization free energy of solvation -29.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds