Wall clock time and date at job start Tue Mar 31 2020 23:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.70116 * 2 1 4 4 C 1.53197 * 109.58623 * 120.35520 * 2 1 3 5 5 H 1.08999 * 109.49570 * 185.10112 * 4 2 1 6 6 C 1.52997 * 109.49685 * 305.20262 * 4 2 1 7 7 O 1.42903 * 109.46839 * 185.00426 * 6 4 2 8 8 C 1.53037 * 109.31097 * 65.15068 * 4 2 1 9 9 C 1.53045 * 109.53866 * 61.36768 * 8 4 2 10 10 C 1.53195 * 109.30924 * 298.63101 * 9 8 4 11 11 N 1.46926 * 109.58592 * 239.64386 * 2 1 3 12 12 S 1.65596 * 120.63060 * 113.54772 * 11 2 1 13 13 O 1.42098 * 106.40329 * 195.06077 * 12 11 2 14 14 O 1.42102 * 106.39921 * 327.97662 * 12 11 2 15 15 C 1.76199 * 107.21942 * 81.51790 * 12 11 2 16 16 C 1.37638 * 120.12509 * 246.35191 * 15 12 11 17 17 C 1.38622 * 120.24373 * 179.69752 * 16 15 12 18 18 C 1.38654 * 120.49954 * 0.60362 * 17 16 15 19 19 C 1.37599 * 120.25125 * 359.67306 * 18 17 16 20 20 C 1.40698 * 120.12844 * 66.62514 * 15 12 11 21 21 C 1.41398 * 120.24269 * 0.02562 * 20 15 12 22 22 H 1.08005 * 120.00095 * 27.28702 * 21 20 15 23 23 C 1.39948 * 120.00030 * 207.28234 * 21 20 15 24 24 N 1.30823 * 119.99788 * 15.73246 * 23 21 20 25 25 Si 1.86794 * 119.99777 * 195.72565 * 23 21 20 26 26 H 1.48506 * 109.47151 * 90.00506 * 25 23 21 27 27 H 1.48505 * 109.46943 * 209.99736 * 25 23 21 28 28 H 1.48492 * 109.47468 * 330.00129 * 25 23 21 29 29 H 1.09001 * 109.47123 * 180.35728 * 1 2 3 30 30 H 1.09003 * 109.46967 * 300.35479 * 1 2 3 31 31 H 1.09004 * 109.47498 * 60.35409 * 1 2 3 32 32 H 1.09008 * 109.46960 * 304.99817 * 6 4 2 33 33 H 1.08996 * 109.47246 * 64.99771 * 6 4 2 34 34 H 0.96705 * 113.99525 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.46144 * 181.38408 * 8 4 2 36 36 H 1.09000 * 109.46522 * 301.35805 * 8 4 2 37 37 H 1.08996 * 109.49677 * 58.58329 * 9 8 4 38 38 H 1.09000 * 109.49952 * 178.65267 * 9 8 4 39 39 H 1.09004 * 109.58509 * 294.84643 * 10 9 8 40 40 H 1.09002 * 109.58172 * 174.42376 * 10 9 8 41 41 H 1.07998 * 119.88123 * 359.97438 * 16 15 12 42 42 H 1.08001 * 119.74674 * 180.29451 * 17 16 15 43 43 H 1.08004 * 119.87166 * 179.70248 * 18 17 16 44 44 H 1.07995 * 120.12641 * 180.02562 * 19 18 17 45 45 H 0.96996 * 119.99927 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 1.2455 5 1 3.1297 -0.6504 1.2913 6 6 1.4314 -0.0964 2.4967 7 8 1.9988 -0.6992 3.6615 8 6 1.6414 -2.2041 1.1702 9 6 2.2800 -2.8464 -0.0635 10 6 1.7691 -2.1410 -1.3237 11 7 2.0225 -0.6996 -1.1945 12 16 2.8417 0.1223 -2.3759 13 8 2.8615 -0.7266 -3.5152 14 8 2.3041 1.4376 -2.3960 15 6 4.5134 0.2762 -1.8408 16 6 5.0325 1.5160 -1.5443 17 6 6.3455 1.6392 -1.1172 18 6 7.1540 0.5194 -0.9955 19 6 6.6578 -0.7293 -1.2919 20 6 5.3244 -0.8672 -1.7205 21 6 4.8038 -2.1453 -2.0283 22 1 3.9981 -2.2429 -2.7409 23 6 5.3327 -3.2838 -1.4098 24 7 6.0769 -3.1614 -0.3409 25 14 4.9758 -4.9782 -2.1105 26 1 6.0227 -5.3346 -3.1016 27 1 4.9734 -5.9776 -1.0121 28 1 3.6477 -4.9695 -2.7748 29 1 -0.3633 -1.0276 0.0064 30 1 -0.3633 0.5193 0.8868 31 1 -0.3634 0.5083 -0.8932 32 1 1.6410 0.9733 2.5024 33 1 0.3531 -0.2553 2.4938 34 1 1.6563 -0.3454 4.4938 35 1 1.9843 -2.7203 2.0669 36 1 0.5564 -2.2815 1.0991 37 1 3.3639 -2.7474 -0.0052 38 1 2.0127 -3.9024 -0.1034 39 1 0.6985 -2.3157 -1.4316 40 1 2.2943 -2.5275 -2.1971 41 1 4.4133 2.3956 -1.6406 42 1 6.7431 2.6155 -0.8822 43 1 8.1769 0.6277 -0.6664 44 1 7.2892 -1.6002 -1.1960 45 1 6.4432 -3.9505 0.0880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601441829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:35 Heat of formation + Delta-G solvation = -134.464169 kcal Electronic energy + Delta-G solvation = -30256.875447 eV Core-core repulsion = 26364.594977 eV Total energy + Delta-G solvation = -3892.280470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.34426 -39.34802 -38.17163 -37.39421 -36.68820 -35.69523 -33.53191 -33.23579 -31.99517 -31.33813 -28.80882 -27.38838 -26.57622 -24.21262 -23.47596 -23.01339 -22.76460 -20.43164 -19.52969 -19.25982 -18.71585 -18.34984 -17.69951 -17.16627 -16.68252 -16.17218 -16.05695 -15.68542 -15.40418 -15.23795 -15.06395 -14.93481 -14.46111 -14.35804 -14.20060 -13.84883 -13.75185 -13.32210 -13.19888 -13.04693 -13.02164 -12.97498 -12.89365 -12.82207 -12.53799 -12.35548 -12.25232 -12.12876 -11.93213 -11.66301 -11.56538 -11.29022 -11.16839 -10.99828 -10.90623 -10.68053 -9.87326 -9.67344 -9.42838 -8.79810 -6.56954 -0.18078 0.56204 0.98099 1.36959 1.47925 1.49087 2.14886 2.24544 2.62311 3.00598 3.38868 3.51110 3.68632 3.75470 3.97172 4.14326 4.29182 4.30908 4.32269 4.40179 4.48579 4.50487 4.53449 4.61828 4.70228 4.72473 4.86876 4.88832 4.95549 5.00885 5.07943 5.13759 5.19221 5.24527 5.31456 5.39900 5.48195 5.55974 5.57094 5.71350 5.76380 5.84639 5.93570 6.01628 6.16608 6.54346 6.72368 6.86300 7.02077 8.16036 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009340 B = 0.007133 C = 0.006041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.276601 B = 3924.539268 C = 4634.106277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.156 3.844 3 H 0.078 0.922 4 C -0.094 4.094 5 H 0.042 0.958 6 C 0.085 3.915 7 O -0.593 6.593 8 C -0.092 4.092 9 C -0.145 4.145 10 C 0.123 3.877 11 N -0.981 5.981 12 S 2.715 3.285 13 O -0.999 6.999 14 O -1.007 7.007 15 C -0.799 4.799 16 C -0.016 4.016 17 C -0.256 4.256 18 C -0.078 4.078 19 C -0.187 4.187 20 C 0.168 3.832 21 C -0.483 4.483 22 H 0.108 0.892 23 C 0.064 3.936 24 N -0.789 5.789 25 Si 0.944 3.056 26 H -0.266 1.266 27 H -0.257 1.257 28 H -0.244 1.244 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.395 0.605 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.111 0.889 45 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.954 -0.178 7.117 12.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.050 3.950 3 H 0.096 0.904 4 C -0.114 4.114 5 H 0.061 0.939 6 C 0.007 3.993 7 O -0.401 6.401 8 C -0.130 4.130 9 C -0.184 4.184 10 C -0.002 4.002 11 N -0.818 5.818 12 S 2.813 3.187 13 O -0.989 6.989 14 O -0.998 6.998 15 C -0.893 4.893 16 C -0.036 4.036 17 C -0.276 4.276 18 C -0.097 4.097 19 C -0.207 4.207 20 C 0.163 3.837 21 C -0.510 4.510 22 H 0.126 0.874 23 C -0.157 4.157 24 N -0.412 5.412 25 Si 0.764 3.236 26 H -0.191 1.191 27 H -0.181 1.181 28 H -0.167 1.167 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.245 0.755 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.136 0.864 44 H 0.129 0.871 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.904 -0.342 6.050 11.611 hybrid contribution 1.122 -0.321 0.529 1.281 sum -8.782 -0.663 6.580 10.993 Atomic orbital electron populations 1.22240 0.92459 1.03787 1.03302 1.20886 0.96251 0.94537 0.83279 0.90386 1.21380 0.99668 0.96979 0.93367 0.93941 1.22254 0.97333 0.95619 0.84076 1.86486 1.69882 1.66518 1.17202 1.21354 1.00907 0.93734 0.96971 1.22029 1.02271 0.99292 0.94842 1.21549 1.01189 0.78271 0.99187 1.57480 1.70312 1.18363 1.35665 1.00532 0.73579 0.71494 0.73077 1.93415 1.88060 1.68052 1.49419 1.93405 1.79440 1.39513 1.87397 1.30184 1.23375 1.00439 1.35322 1.20532 0.95798 0.94801 0.92451 1.20828 0.95353 0.98244 1.13189 1.21200 0.98874 0.93103 0.96522 1.21523 0.96140 0.96477 1.06552 1.17268 0.90843 0.91175 0.84420 1.20551 1.18144 0.90839 1.21469 0.87405 1.26478 0.92094 1.04250 0.92880 1.69837 1.23284 1.34330 1.13772 0.85739 0.81201 0.76932 0.79700 1.19095 1.18068 1.16715 0.90394 0.88863 0.92565 0.93060 0.90331 0.75537 0.92556 0.89689 0.91695 0.90424 0.89324 0.90430 0.86404 0.85867 0.86353 0.87078 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 8.51 71.98 0.61 -2.96 16 2 C 0.16 4.82 2.71 44.98 0.12 4.95 16 3 H 0.08 2.55 7.38 -2.39 -0.02 2.54 16 4 C -0.09 -2.85 2.36 -10.72 -0.03 -2.88 16 5 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 6 C 0.09 1.93 5.76 71.98 0.41 2.34 16 7 O -0.59 -14.33 13.18 -148.98 -1.96 -16.29 16 8 C -0.09 -2.63 4.87 30.62 0.15 -2.48 16 9 C -0.15 -4.83 5.96 30.67 0.18 -4.64 16 10 C 0.12 4.18 5.09 86.36 0.44 4.62 16 11 N -0.98 -36.23 2.99 -490.76 -1.47 -37.69 16 12 S 2.71 121.82 5.05 -56.49 -0.29 121.53 16 13 O -1.00 -49.26 14.33 -128.00 -1.83 -51.09 16 14 O -1.01 -46.08 16.00 -128.00 -2.05 -48.12 16 15 C -0.80 -39.24 5.97 22.73 0.14 -39.10 16 16 C -0.02 -0.75 9.54 22.22 0.21 -0.53 16 17 C -0.26 -11.22 10.05 22.46 0.23 -10.99 16 18 C -0.08 -3.55 10.02 22.22 0.22 -3.33 16 19 C -0.19 -9.47 8.67 22.73 0.20 -9.27 16 20 C 0.17 8.66 5.55 -21.29 -0.12 8.54 16 21 C -0.48 -23.88 6.07 23.46 0.14 -23.74 16 22 H 0.11 5.41 3.70 -2.91 -0.01 5.40 16 23 C 0.06 2.89 3.76 85.26 0.32 3.21 16 24 N -0.79 -36.86 11.02 21.83 0.24 -36.62 16 25 Si 0.94 35.07 29.59 68.60 2.03 37.10 16 26 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 27 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 28 H -0.24 -8.79 7.11 99.48 0.71 -8.08 16 29 H 0.08 1.54 5.72 -2.39 -0.01 1.52 16 30 H 0.09 1.53 6.52 -2.39 -0.02 1.51 16 31 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.08 1.30 6.68 -2.39 -0.02 1.28 16 34 H 0.40 5.24 9.12 -74.05 -0.68 4.56 16 35 H 0.06 1.69 7.79 -2.38 -0.02 1.67 16 36 H 0.08 1.90 6.49 -2.39 -0.02 1.89 16 37 H 0.06 2.66 5.57 -2.39 -0.01 2.65 16 38 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.09 2.39 7.50 -2.39 -0.02 2.37 16 40 H 0.08 3.01 5.01 -2.39 -0.01 3.00 16 41 H 0.12 5.02 7.32 -2.91 -0.02 5.00 16 42 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 43 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 44 H 0.11 5.70 6.30 -2.91 -0.02 5.69 16 45 H 0.29 12.47 8.30 -92.71 -0.77 11.70 16 Total: -1.00 -65.00 350.45 -1.73 -66.74 By element: Atomic # 1 Polarization: 40.36 SS G_CDS: 0.36 Total: 40.73 kcal Atomic # 6 Polarization: -79.50 SS G_CDS: 3.23 Total: -76.27 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -1.23 Total: -74.31 kcal Atomic # 8 Polarization: -109.67 SS G_CDS: -5.85 Total: -115.51 kcal Atomic # 14 Polarization: 35.07 SS G_CDS: 2.03 Total: 37.10 kcal Atomic # 16 Polarization: 121.82 SS G_CDS: -0.29 Total: 121.53 kcal Total: -65.00 -1.73 -66.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601441829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.728 kcal (2) G-P(sol) polarization free energy of solvation -65.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds