Wall clock time and date at job start Tue Mar 31 2020 23:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.57971 * 2 1 4 4 C 1.53188 * 109.58619 * 239.71898 * 2 1 3 5 5 H 1.09005 * 109.49457 * 305.41729 * 4 2 1 6 6 C 1.52999 * 109.50096 * 65.48042 * 4 2 1 7 7 O 1.42900 * 109.47211 * 185.00342 * 6 4 2 8 8 C 1.53037 * 109.31215 * 185.43301 * 4 2 1 9 9 C 1.53044 * 109.53792 * 61.36509 * 8 4 2 10 10 C 1.53189 * 109.30924 * 298.63277 * 9 8 4 11 11 N 1.46919 * 109.70603 * 120.35431 * 2 1 3 12 12 S 1.65610 * 120.62939 * 353.46918 * 11 2 1 13 13 O 1.42098 * 106.40152 * 40.19975 * 12 11 2 14 14 O 1.42099 * 106.39969 * 173.12194 * 12 11 2 15 15 C 1.76203 * 107.21425 * 286.66062 * 12 11 2 16 16 C 1.37636 * 120.12627 * 113.65289 * 15 12 11 17 17 C 1.38616 * 120.24769 * 179.69797 * 16 15 12 18 18 C 1.38656 * 120.49871 * 0.59989 * 17 16 15 19 19 C 1.37590 * 120.24961 * 359.67593 * 18 17 16 20 20 C 1.40694 * 120.12703 * 293.91953 * 15 12 11 21 21 C 1.41393 * 120.24624 * 0.02841 * 20 15 12 22 22 H 1.07994 * 119.99921 * 28.97497 * 21 20 15 23 23 C 1.39946 * 120.00077 * 208.97209 * 21 20 15 24 24 N 1.30828 * 119.99853 * 9.94430 * 23 21 20 25 25 Si 1.86802 * 120.00205 * 189.94394 * 23 21 20 26 26 H 1.48494 * 109.46986 * 90.00053 * 25 23 21 27 27 H 1.48494 * 109.46893 * 210.00237 * 25 23 21 28 28 H 1.48504 * 109.46885 * 330.00094 * 25 23 21 29 29 H 1.09001 * 109.47182 * 171.77975 * 1 2 3 30 30 H 1.09004 * 109.47320 * 291.77790 * 1 2 3 31 31 H 1.09005 * 109.47678 * 51.77549 * 1 2 3 32 32 H 1.09002 * 109.47052 * 304.99795 * 6 4 2 33 33 H 1.09004 * 109.47127 * 64.99955 * 6 4 2 34 34 H 0.96701 * 113.99948 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.46016 * 181.37902 * 8 4 2 36 36 H 1.08993 * 109.46185 * 301.34122 * 8 4 2 37 37 H 1.08999 * 109.49728 * 58.58327 * 9 8 4 38 38 H 1.09000 * 109.49708 * 178.65085 * 9 8 4 39 39 H 1.09003 * 109.58501 * 174.42051 * 10 9 8 40 40 H 1.08995 * 109.58922 * 294.84510 * 10 9 8 41 41 H 1.08005 * 119.87450 * 359.97438 * 16 15 12 42 42 H 1.08002 * 119.74948 * 180.29601 * 17 16 15 43 43 H 1.08001 * 119.87031 * 179.70209 * 18 17 16 44 44 H 1.08005 * 120.12957 * 180.02562 * 19 18 17 45 45 H 0.97001 * 119.99792 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7277 -1.2463 5 1 1.6044 -1.7244 -1.2924 6 6 1.6508 0.0616 -2.4968 7 8 2.0271 -0.6745 -3.6624 8 6 3.5677 -0.8432 -1.1729 9 6 3.9603 -1.6607 0.0599 10 6 3.4685 -0.9435 1.3210 11 7 2.0254 -0.6990 1.1935 12 16 0.9770 -1.2018 2.3728 13 8 -0.1694 -1.7065 1.7020 14 8 1.7432 -1.9717 3.2891 15 6 0.4496 0.2336 3.2483 16 6 -0.8638 0.6397 3.1816 17 6 -1.2828 1.7649 3.8742 18 6 -0.3837 2.5007 4.6311 19 6 0.9353 2.1165 4.7076 20 6 1.3706 0.9721 4.0136 21 6 2.7237 0.5680 4.0845 22 1 3.1723 0.0360 3.2587 23 6 3.4817 0.8576 5.2247 24 7 2.8968 1.3245 6.2978 25 14 5.3286 0.5774 5.2146 26 1 6.0137 1.8102 4.7499 27 1 5.7861 0.2443 6.5875 28 1 5.6539 -0.5451 4.2984 29 1 -0.3633 -1.0171 -0.1469 30 1 -0.3634 0.3813 0.9543 31 1 -0.3634 0.6359 -0.8073 32 1 0.5728 0.2226 -2.5012 33 1 2.1620 1.0243 -2.4942 34 1 1.8083 -0.2326 -4.4943 35 1 3.9380 -1.3390 -2.0703 36 1 4.0044 0.1529 -1.1023 37 1 3.5036 -2.6487 0.0018 38 1 5.0448 -1.7629 0.0984 39 1 3.6576 -1.5683 2.1939 40 1 3.9920 0.0065 1.4287 41 1 -1.5716 0.0769 2.5909 42 1 -2.3163 2.0736 3.8201 43 1 -0.7201 3.3784 5.1628 44 1 1.6338 2.6908 5.2981 45 1 3.4221 1.5249 7.0882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601441832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:49 Heat of formation + Delta-G solvation = -105.955353 kcal Electronic energy + Delta-G solvation = -29719.882267 eV Core-core repulsion = 25828.838032 eV Total energy + Delta-G solvation = -3891.044235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.09469 -37.61436 -36.50403 -36.48854 -34.81187 -33.89606 -32.64308 -32.32224 -30.22374 -29.61196 -27.40775 -25.80825 -25.33212 -23.01972 -21.61068 -21.38168 -21.15942 -20.01634 -18.10676 -17.72541 -17.32879 -16.73133 -16.01190 -15.57652 -15.37792 -15.03175 -14.42904 -14.33700 -14.24509 -13.92942 -13.66737 -13.29131 -13.11417 -13.01323 -12.77892 -12.55201 -12.26400 -12.06590 -11.91501 -11.68890 -11.34983 -11.29172 -11.20962 -11.12875 -10.98824 -10.88587 -10.72674 -10.59744 -10.47125 -10.44877 -10.32137 -9.90400 -9.85794 -9.82168 -9.45168 -9.25714 -8.42157 -7.99876 -7.59213 -7.01657 -4.76209 1.48605 2.33389 2.71347 2.96033 3.00281 3.09979 3.76324 3.76813 4.21276 4.41174 4.70546 4.80343 4.94351 5.07227 5.19711 5.30002 5.32530 5.41259 5.50067 5.56697 5.60641 5.63183 5.82893 5.91672 5.94842 6.02296 6.09471 6.16310 6.21913 6.26138 6.30978 6.38595 6.40244 6.54681 6.62493 6.75697 6.82294 6.94902 7.04544 7.23269 7.32357 7.49099 7.55339 7.66472 7.80070 7.89865 8.29053 8.50888 8.64959 9.90927 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011836 B = 0.005759 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.067743 B = 4861.163670 C = 6159.491350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.169 3.831 3 H 0.072 0.928 4 C -0.095 4.095 5 H 0.083 0.917 6 C 0.080 3.920 7 O -0.573 6.573 8 C -0.107 4.107 9 C -0.133 4.133 10 C 0.115 3.885 11 N -0.994 5.994 12 S 2.699 3.301 13 O -0.993 6.993 14 O -0.965 6.965 15 C -0.774 4.774 16 C -0.006 4.006 17 C -0.249 4.249 18 C -0.078 4.078 19 C -0.156 4.156 20 C 0.186 3.814 21 C -0.452 4.452 22 H 0.094 0.906 23 C 0.081 3.919 24 N -0.779 5.779 25 Si 0.911 3.089 26 H -0.264 1.264 27 H -0.272 1.272 28 H -0.252 1.252 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.375 0.625 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.126 0.874 45 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.041 1.173 -12.174 12.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.062 3.938 3 H 0.090 0.910 4 C -0.116 4.116 5 H 0.101 0.899 6 C 0.002 3.998 7 O -0.378 6.378 8 C -0.144 4.144 9 C -0.172 4.172 10 C -0.010 4.010 11 N -0.830 5.830 12 S 2.799 3.201 13 O -0.984 6.984 14 O -0.956 6.956 15 C -0.869 4.869 16 C -0.026 4.026 17 C -0.269 4.269 18 C -0.097 4.097 19 C -0.176 4.176 20 C 0.181 3.819 21 C -0.480 4.480 22 H 0.112 0.888 23 C -0.140 4.140 24 N -0.402 5.402 25 Si 0.734 3.266 26 H -0.189 1.189 27 H -0.197 1.197 28 H -0.175 1.175 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.221 0.779 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.088 0.912 41 H 0.127 0.873 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.144 0.856 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.082 -0.098 -11.300 11.490 hybrid contribution 0.439 1.283 0.043 1.357 sum 2.521 1.185 -11.256 11.596 Atomic orbital electron populations 1.22859 0.93525 1.05405 1.03755 1.20662 0.94110 0.95275 0.83768 0.91024 1.21543 0.96985 1.00632 0.92405 0.89868 1.22253 0.98516 0.93875 0.85166 1.86478 1.85532 1.49688 1.16067 1.21458 0.94650 1.00372 0.97933 1.21934 1.00720 0.99522 0.95074 1.21512 0.80103 1.00845 0.98552 1.57841 1.17597 1.74353 1.33179 1.01204 0.72111 0.74625 0.72113 1.93467 1.50658 1.79746 1.74513 1.93496 1.70906 1.68975 1.62186 1.29959 1.02059 1.26291 1.28559 1.20237 0.93290 0.94331 0.94732 1.20492 0.98236 1.00735 1.07442 1.20905 0.94356 0.97698 0.96785 1.21555 0.95014 0.97987 1.03015 1.17016 0.91165 0.87872 0.85813 1.20102 0.95160 1.30315 1.02413 0.88779 1.25943 1.01718 0.91944 0.94424 1.69777 1.38377 1.29948 1.02143 0.86228 0.80808 0.80223 0.79376 1.18920 1.19710 1.17509 0.88397 0.90647 0.91659 0.93059 0.93599 0.77852 0.91437 0.92072 0.91715 0.91027 0.88147 0.91191 0.87345 0.88778 0.88858 0.85622 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.13 7.20 37.16 0.27 -2.86 16 2 C 0.17 2.61 2.97 -67.61 -0.20 2.40 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 4 C -0.10 -1.29 2.04 -90.50 -0.18 -1.47 16 5 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 6 C 0.08 0.87 6.30 37.16 0.23 1.11 16 7 O -0.57 -6.12 13.18 -35.23 -0.46 -6.59 16 8 C -0.11 -1.36 5.08 -26.69 -0.14 -1.49 16 9 C -0.13 -1.82 6.08 -26.61 -0.16 -1.98 16 10 C 0.12 1.93 4.54 -3.71 -0.02 1.91 16 11 N -0.99 -18.13 3.11 -106.49 -0.33 -18.46 16 12 S 2.70 59.74 4.47 -107.50 -0.48 59.26 16 13 O -0.99 -22.02 12.94 -57.17 -0.74 -22.76 16 14 O -0.97 -24.20 14.84 -57.17 -0.85 -25.05 16 15 C -0.77 -18.41 5.39 -38.87 -0.21 -18.62 16 16 C -0.01 -0.14 7.95 -39.66 -0.32 -0.45 16 17 C -0.25 -5.38 10.05 -39.29 -0.39 -5.78 16 18 C -0.08 -1.75 10.02 -39.66 -0.40 -2.15 16 19 C -0.16 -3.83 8.66 -38.87 -0.34 -4.17 16 20 C 0.19 4.71 5.55 -106.82 -0.59 4.12 16 21 C -0.45 -11.18 7.61 -37.74 -0.29 -11.47 16 22 H 0.09 2.16 3.12 -52.49 -0.16 2.00 16 23 C 0.08 1.92 5.27 -17.34 -0.09 1.83 16 24 N -0.78 -19.06 10.82 55.55 0.60 -18.46 16 25 Si 0.91 17.72 29.57 -169.99 -5.03 12.69 16 26 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 27 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 28 H -0.25 -4.79 7.11 56.52 0.40 -4.39 16 29 H 0.10 1.66 6.39 -51.93 -0.33 1.33 16 30 H 0.07 1.34 3.80 -51.93 -0.20 1.15 16 31 H 0.06 0.82 6.92 -51.93 -0.36 0.46 16 32 H 0.05 0.52 6.57 -51.93 -0.34 0.18 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.38 2.22 9.12 45.56 0.42 2.63 16 35 H 0.07 0.83 7.79 -51.93 -0.40 0.43 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 1.85 6.19 -51.93 -0.32 1.53 16 40 H 0.07 1.11 7.71 -51.93 -0.40 0.71 16 41 H 0.11 2.23 6.89 -52.48 -0.36 1.87 16 42 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.13 3.12 6.21 -52.48 -0.33 2.79 16 45 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 LS Contribution 348.91 15.07 5.26 5.26 Total: -1.00 -30.27 348.91 -10.16 -40.43 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -5.31 Total: 12.73 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: -2.82 Total: -39.07 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.27 Total: -36.92 kcal Atomic # 8 Polarization: -52.33 SS G_CDS: -2.05 Total: -54.39 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 16 Polarization: 59.74 SS G_CDS: -0.48 Total: 59.26 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.27 -10.16 -40.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601441832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.527 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds