Wall clock time and date at job start Tue Mar 31 2020 23:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.57971 * 2 1 4 4 C 1.53188 * 109.58619 * 239.71898 * 2 1 3 5 5 H 1.09005 * 109.49457 * 305.41729 * 4 2 1 6 6 C 1.52999 * 109.50096 * 65.48042 * 4 2 1 7 7 O 1.42900 * 109.47211 * 185.00342 * 6 4 2 8 8 C 1.53037 * 109.31215 * 185.43301 * 4 2 1 9 9 C 1.53044 * 109.53792 * 61.36509 * 8 4 2 10 10 C 1.53189 * 109.30924 * 298.63277 * 9 8 4 11 11 N 1.46919 * 109.70603 * 120.35431 * 2 1 3 12 12 S 1.65610 * 120.62939 * 353.46918 * 11 2 1 13 13 O 1.42098 * 106.40152 * 40.19975 * 12 11 2 14 14 O 1.42099 * 106.39969 * 173.12194 * 12 11 2 15 15 C 1.76203 * 107.21425 * 286.66062 * 12 11 2 16 16 C 1.37636 * 120.12627 * 113.65289 * 15 12 11 17 17 C 1.38616 * 120.24769 * 179.69797 * 16 15 12 18 18 C 1.38656 * 120.49871 * 0.59989 * 17 16 15 19 19 C 1.37590 * 120.24961 * 359.67593 * 18 17 16 20 20 C 1.40694 * 120.12703 * 293.91953 * 15 12 11 21 21 C 1.41393 * 120.24624 * 0.02841 * 20 15 12 22 22 H 1.07994 * 119.99921 * 28.97497 * 21 20 15 23 23 C 1.39946 * 120.00077 * 208.97209 * 21 20 15 24 24 N 1.30828 * 119.99853 * 9.94430 * 23 21 20 25 25 Si 1.86802 * 120.00205 * 189.94394 * 23 21 20 26 26 H 1.48494 * 109.46986 * 90.00053 * 25 23 21 27 27 H 1.48494 * 109.46893 * 210.00237 * 25 23 21 28 28 H 1.48504 * 109.46885 * 330.00094 * 25 23 21 29 29 H 1.09001 * 109.47182 * 171.77975 * 1 2 3 30 30 H 1.09004 * 109.47320 * 291.77790 * 1 2 3 31 31 H 1.09005 * 109.47678 * 51.77549 * 1 2 3 32 32 H 1.09002 * 109.47052 * 304.99795 * 6 4 2 33 33 H 1.09004 * 109.47127 * 64.99955 * 6 4 2 34 34 H 0.96701 * 113.99948 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.46016 * 181.37902 * 8 4 2 36 36 H 1.08993 * 109.46185 * 301.34122 * 8 4 2 37 37 H 1.08999 * 109.49728 * 58.58327 * 9 8 4 38 38 H 1.09000 * 109.49708 * 178.65085 * 9 8 4 39 39 H 1.09003 * 109.58501 * 174.42051 * 10 9 8 40 40 H 1.08995 * 109.58922 * 294.84510 * 10 9 8 41 41 H 1.08005 * 119.87450 * 359.97438 * 16 15 12 42 42 H 1.08002 * 119.74948 * 180.29601 * 17 16 15 43 43 H 1.08001 * 119.87031 * 179.70209 * 18 17 16 44 44 H 1.08005 * 120.12957 * 180.02562 * 19 18 17 45 45 H 0.97001 * 119.99792 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7277 -1.2463 5 1 1.6044 -1.7244 -1.2924 6 6 1.6508 0.0616 -2.4968 7 8 2.0271 -0.6745 -3.6624 8 6 3.5677 -0.8432 -1.1729 9 6 3.9603 -1.6607 0.0599 10 6 3.4685 -0.9435 1.3210 11 7 2.0254 -0.6990 1.1935 12 16 0.9770 -1.2018 2.3728 13 8 -0.1694 -1.7065 1.7020 14 8 1.7432 -1.9717 3.2891 15 6 0.4496 0.2336 3.2483 16 6 -0.8638 0.6397 3.1816 17 6 -1.2828 1.7649 3.8742 18 6 -0.3837 2.5007 4.6311 19 6 0.9353 2.1165 4.7076 20 6 1.3706 0.9721 4.0136 21 6 2.7237 0.5680 4.0845 22 1 3.1723 0.0360 3.2587 23 6 3.4817 0.8576 5.2247 24 7 2.8968 1.3245 6.2978 25 14 5.3286 0.5774 5.2146 26 1 6.0137 1.8102 4.7499 27 1 5.7861 0.2443 6.5875 28 1 5.6539 -0.5451 4.2984 29 1 -0.3633 -1.0171 -0.1469 30 1 -0.3634 0.3813 0.9543 31 1 -0.3634 0.6359 -0.8073 32 1 0.5728 0.2226 -2.5012 33 1 2.1620 1.0243 -2.4942 34 1 1.8083 -0.2326 -4.4943 35 1 3.9380 -1.3390 -2.0703 36 1 4.0044 0.1529 -1.1023 37 1 3.5036 -2.6487 0.0018 38 1 5.0448 -1.7629 0.0984 39 1 3.6576 -1.5683 2.1939 40 1 3.9920 0.0065 1.4287 41 1 -1.5716 0.0769 2.5909 42 1 -2.3163 2.0736 3.8201 43 1 -0.7201 3.3784 5.1628 44 1 1.6338 2.6908 5.2981 45 1 3.4221 1.5249 7.0882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601441832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:48 Heat of formation + Delta-G solvation = -126.887641 kcal Electronic energy + Delta-G solvation = -29720.789959 eV Core-core repulsion = 25828.838032 eV Total energy + Delta-G solvation = -3891.951927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.25079 -39.37514 -38.26513 -37.38653 -36.63186 -35.66010 -33.85685 -33.51230 -31.99797 -31.38290 -28.58533 -27.42314 -26.58887 -24.26699 -23.36131 -22.95036 -22.51974 -21.15689 -19.76687 -19.35587 -18.47265 -18.15099 -17.66704 -17.13915 -16.93945 -16.13951 -15.99028 -15.72538 -15.33173 -15.30210 -15.06599 -14.93622 -14.70147 -14.48079 -14.16755 -13.79723 -13.65807 -13.42485 -13.31362 -13.25245 -12.95424 -12.86587 -12.82742 -12.72274 -12.63912 -12.30537 -12.16691 -12.11794 -11.82018 -11.69858 -11.62827 -11.32363 -11.19000 -11.15290 -10.99369 -10.69113 -9.88639 -9.70117 -9.40237 -8.76898 -6.59716 -0.19618 0.54015 0.97465 1.36154 1.48412 1.52323 2.16197 2.23714 2.64700 3.00914 3.33902 3.48950 3.64831 3.78569 3.87908 4.02796 4.13086 4.25179 4.32312 4.36427 4.45213 4.50409 4.54398 4.60652 4.70558 4.75593 4.77259 4.87113 4.90241 4.99770 5.04558 5.06700 5.16337 5.18992 5.30246 5.32661 5.34299 5.49383 5.53510 5.55509 5.70881 5.81513 5.91182 6.01028 6.11018 6.49431 6.70038 6.84921 7.01156 8.18680 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011836 B = 0.005759 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.067743 B = 4861.163670 C = 6159.491350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.163 3.837 3 H 0.084 0.916 4 C -0.094 4.094 5 H 0.064 0.936 6 C 0.085 3.915 7 O -0.589 6.589 8 C -0.102 4.102 9 C -0.129 4.129 10 C 0.107 3.893 11 N -0.991 5.991 12 S 2.711 3.289 13 O -1.000 7.000 14 O -1.003 7.003 15 C -0.789 4.789 16 C -0.015 4.015 17 C -0.250 4.250 18 C -0.078 4.078 19 C -0.184 4.184 20 C 0.160 3.840 21 C -0.480 4.480 22 H 0.104 0.896 23 C 0.038 3.962 24 N -0.812 5.812 25 Si 0.967 3.033 26 H -0.247 1.247 27 H -0.269 1.269 28 H -0.248 1.248 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.397 0.603 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.121 0.879 44 H 0.115 0.885 45 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.683 2.051 -14.295 14.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.058 3.942 3 H 0.102 0.898 4 C -0.114 4.114 5 H 0.083 0.917 6 C 0.007 3.993 7 O -0.397 6.397 8 C -0.139 4.139 9 C -0.168 4.168 10 C -0.017 4.017 11 N -0.829 5.829 12 S 2.810 3.190 13 O -0.990 6.990 14 O -0.993 6.993 15 C -0.883 4.883 16 C -0.034 4.034 17 C -0.270 4.270 18 C -0.096 4.096 19 C -0.204 4.204 20 C 0.155 3.845 21 C -0.508 4.508 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.436 5.436 25 Si 0.786 3.214 26 H -0.171 1.171 27 H -0.193 1.193 28 H -0.171 1.171 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.246 0.754 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.139 0.861 44 H 0.133 0.867 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.695 0.802 -13.432 13.723 hybrid contribution 0.115 1.010 0.637 1.199 sum 2.809 1.811 -12.795 13.224 Atomic orbital electron populations 1.22845 0.93864 1.05100 1.03891 1.20916 0.93978 0.95894 0.83429 0.89757 1.21483 0.97421 0.99795 0.92740 0.91738 1.22147 0.99218 0.93799 0.84162 1.86415 1.85711 1.50498 1.17066 1.21440 0.94072 1.00901 0.97490 1.21930 1.02085 0.98834 0.93919 1.21669 0.79269 1.01321 0.99471 1.57584 1.17772 1.74598 1.32971 1.00680 0.72078 0.74091 0.72105 1.93460 1.51285 1.79929 1.74352 1.93439 1.71748 1.70116 1.64009 1.30239 1.02685 1.26465 1.28934 1.20534 0.93129 0.94862 0.94912 1.20889 0.99709 1.00092 1.06283 1.21246 0.93590 0.98431 0.96350 1.21603 0.96092 0.98495 1.04248 1.17352 0.92012 0.88514 0.86598 1.20449 0.95641 1.31354 1.03400 0.87876 1.26815 1.05934 0.91372 0.93774 1.69828 1.40067 1.30913 1.02816 0.85393 0.75535 0.80849 0.79580 1.17068 1.19302 1.17067 0.89908 0.92797 0.88152 0.92224 0.91861 0.75357 0.90513 0.90818 0.92496 0.88558 0.90399 0.90321 0.85932 0.85514 0.86074 0.86737 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.06 7.20 71.98 0.52 -5.54 16 2 C 0.16 4.83 2.97 44.97 0.13 4.96 16 3 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 4 C -0.09 -2.34 2.04 -10.72 -0.02 -2.36 16 5 H 0.06 1.85 8.13 -2.38 -0.02 1.83 16 6 C 0.08 1.58 6.30 71.98 0.45 2.03 16 7 O -0.59 -10.72 13.18 -148.98 -1.96 -12.69 16 8 C -0.10 -2.32 5.08 30.62 0.16 -2.16 16 9 C -0.13 -3.31 6.08 30.67 0.19 -3.12 16 10 C 0.11 3.56 4.54 86.36 0.39 3.95 16 11 N -0.99 -36.04 3.11 -490.81 -1.52 -37.56 16 12 S 2.71 122.56 4.47 -56.49 -0.25 122.30 16 13 O -1.00 -44.97 12.94 -128.00 -1.66 -46.63 16 14 O -1.00 -52.14 14.84 -128.00 -1.90 -54.04 16 15 C -0.79 -38.22 5.39 22.73 0.12 -38.09 16 16 C -0.01 -0.66 7.95 22.22 0.18 -0.48 16 17 C -0.25 -10.49 10.05 22.46 0.23 -10.27 16 18 C -0.08 -3.41 10.02 22.22 0.22 -3.19 16 19 C -0.18 -9.26 8.66 22.73 0.20 -9.06 16 20 C 0.16 8.29 5.55 -21.29 -0.12 8.17 16 21 C -0.48 -24.40 7.61 23.46 0.18 -24.22 16 22 H 0.10 4.85 3.12 -2.91 -0.01 4.84 16 23 C 0.04 1.86 5.27 85.26 0.45 2.31 16 24 N -0.81 -40.82 10.82 21.83 0.24 -40.58 16 25 Si 0.97 36.22 29.57 68.60 2.03 38.25 16 26 H -0.25 -8.47 7.11 99.48 0.71 -7.77 16 27 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 28 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 29 H 0.08 2.77 6.39 -2.39 -0.02 2.75 16 30 H 0.05 1.88 3.80 -2.38 -0.01 1.88 16 31 H 0.10 2.27 6.92 -2.38 -0.02 2.25 16 32 H 0.06 1.00 6.57 -2.39 -0.02 0.99 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.40 3.35 9.12 -74.06 -0.68 2.68 16 35 H 0.08 1.66 7.79 -2.39 -0.02 1.64 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.08 2.93 6.19 -2.39 -0.01 2.92 16 40 H 0.08 2.44 7.71 -2.39 -0.02 2.42 16 41 H 0.12 5.00 6.89 -2.91 -0.02 4.98 16 42 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 43 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 44 H 0.11 5.89 6.21 -2.91 -0.02 5.87 16 45 H 0.29 13.26 8.30 -92.71 -0.77 12.49 16 Total: -1.00 -67.06 348.91 -1.40 -68.47 By element: Atomic # 1 Polarization: 39.20 SS G_CDS: 0.36 Total: 39.56 kcal Atomic # 6 Polarization: -80.35 SS G_CDS: 3.27 Total: -77.08 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -1.29 Total: -78.14 kcal Atomic # 8 Polarization: -107.84 SS G_CDS: -5.52 Total: -113.36 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.25 kcal Atomic # 16 Polarization: 122.56 SS G_CDS: -0.25 Total: 122.30 kcal Total: -67.06 -1.40 -68.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601441832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.421 kcal (2) G-P(sol) polarization free energy of solvation -67.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds