Wall clock time and date at job start Tue Mar 31 2020 23:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.49976 * 2 1 4 4 C 1.53039 * 109.49627 * 239.93286 * 2 1 3 5 5 C 1.53039 * 109.54158 * 301.40975 * 4 2 1 6 6 H 1.09003 * 109.49386 * 58.58759 * 5 4 2 7 7 C 1.52999 * 109.52757 * 178.66758 * 5 4 2 8 8 O 1.42894 * 109.47145 * 184.85921 * 7 5 4 9 9 C 1.53188 * 109.31430 * 298.63887 * 5 4 2 10 10 N 1.46930 * 108.77614 * 54.63197 * 9 5 4 11 11 S 1.65600 * 120.63050 * 126.36947 * 10 9 5 12 12 O 1.42101 * 106.40293 * 328.87471 * 11 10 9 13 13 O 1.42101 * 106.39916 * 195.95930 * 11 10 9 14 14 C 1.76195 * 107.22015 * 82.41632 * 11 10 9 15 15 C 1.37641 * 120.12847 * 244.13819 * 14 11 10 16 16 C 1.38614 * 120.24832 * 179.97438 * 15 14 11 17 17 C 1.38662 * 120.50244 * 359.97438 * 16 15 14 18 18 C 1.37595 * 120.24676 * 0.02562 * 17 16 15 19 19 C 1.40699 * 120.12884 * 64.38588 * 14 11 10 20 20 C 1.41395 * 120.24330 * 0.02663 * 19 14 11 21 21 H 1.08005 * 120.00392 * 31.73790 * 20 19 14 22 22 C 1.39948 * 119.99951 * 211.74043 * 20 19 14 23 23 N 1.30816 * 120.00370 * 11.21445 * 22 20 19 24 24 Si 1.86808 * 119.99813 * 191.21215 * 22 20 19 25 25 H 1.48503 * 109.47007 * 89.99990 * 24 22 20 26 26 H 1.48506 * 109.46847 * 210.00047 * 24 22 20 27 27 H 1.48503 * 109.47133 * 329.99764 * 24 22 20 28 28 C 1.46921 * 118.73633 * 306.64139 * 10 9 5 29 29 H 1.09006 * 109.46932 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.46969 * 300.06545 * 1 2 3 31 31 H 1.09001 * 109.47106 * 60.06819 * 1 2 3 32 32 H 1.09003 * 109.45794 * 181.39497 * 4 2 1 33 33 H 1.09004 * 109.46060 * 61.43705 * 4 2 1 34 34 H 1.09007 * 109.47097 * 304.85616 * 7 5 4 35 35 H 1.09004 * 109.46991 * 64.85444 * 7 5 4 36 36 H 0.96701 * 114.00199 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.58648 * 294.84262 * 9 5 4 38 38 H 1.09005 * 109.70418 * 174.48491 * 9 5 4 39 39 H 1.07997 * 119.87454 * 359.97402 * 15 14 11 40 40 H 1.07995 * 119.75068 * 180.02562 * 16 15 14 41 41 H 1.07999 * 119.87425 * 180.02562 * 17 16 15 42 42 H 1.08000 * 120.12719 * 179.97438 * 18 17 16 43 43 H 0.96999 * 120.00358 * 179.97438 * 23 22 20 44 44 H 1.09004 * 109.58302 * 173.14369 * 28 10 9 45 45 H 1.08997 * 109.58931 * 293.57062 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2485 5 6 1.5031 -2.1555 -1.2665 6 1 0.4133 -2.1352 -1.2546 7 6 1.9867 -2.8674 -2.5315 8 8 1.3933 -4.1652 -2.6041 9 6 2.0141 -2.9040 -0.0315 10 7 1.6516 -2.1384 1.1691 11 16 0.8191 -2.8559 2.4078 12 8 -0.0045 -3.8505 1.8147 13 8 0.3077 -1.8013 3.2113 14 6 1.9964 -3.7120 3.4005 15 6 1.9434 -5.0832 3.5071 16 6 2.8687 -5.7593 4.2870 17 6 3.8572 -5.0645 4.9674 18 6 3.9292 -3.6936 4.8753 19 6 2.9912 -2.9961 4.0915 20 6 3.0520 -1.5868 3.9941 21 1 2.1453 -1.0150 3.8617 22 6 4.2869 -0.9328 4.0692 23 7 5.3970 -1.6222 4.0085 24 14 4.3502 0.9248 4.2562 25 1 4.3562 1.2772 5.6988 26 1 5.5841 1.4451 3.6143 27 1 3.1606 1.5288 3.6040 28 6 2.0365 -0.7227 1.2470 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5148 0.8893 31 1 -0.3633 0.5128 -0.8906 32 1 3.1305 -0.7441 -1.2354 33 1 1.6988 -0.1953 -2.1390 34 1 1.6987 -2.2867 -3.4079 35 1 3.0720 -2.9651 -2.5010 36 1 1.6562 -4.6749 -3.3827 37 1 3.0980 -3.0043 -0.0875 38 1 1.5575 -3.8928 0.0140 39 1 1.1780 -5.6345 2.9812 40 1 2.8199 -6.8353 4.3646 41 1 4.5732 -5.6015 5.5718 42 1 4.6997 -3.1543 5.4064 43 1 6.2530 -1.1689 4.0602 44 1 1.5926 -0.2717 2.1345 45 1 3.1222 -0.6414 1.2973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601445614.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:51 Heat of formation + Delta-G solvation = -118.355222 kcal Electronic energy + Delta-G solvation = -29732.816190 eV Core-core repulsion = 25841.234257 eV Total energy + Delta-G solvation = -3891.581933 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.07436 -37.57875 -36.58383 -36.24216 -34.83356 -33.88954 -32.72312 -32.02256 -30.19763 -29.55080 -26.74227 -25.77994 -25.37037 -24.02938 -21.62672 -21.33010 -21.11860 -19.12377 -17.97875 -17.55916 -17.20298 -17.03001 -16.03842 -15.56127 -15.40588 -14.76350 -14.68921 -14.34569 -13.98125 -13.86816 -13.48565 -13.37591 -13.13564 -13.06427 -12.93380 -12.73460 -12.15646 -11.93538 -11.67587 -11.44499 -11.33459 -11.27851 -11.17279 -11.16274 -11.08482 -10.92749 -10.82527 -10.65675 -10.56398 -10.48930 -10.15730 -9.95905 -9.88367 -9.83232 -9.45913 -9.20361 -8.27478 -7.98647 -7.56633 -7.03867 -4.77066 1.54644 2.35213 2.72072 2.95343 2.99980 3.08894 3.75472 3.89411 4.22451 4.39463 4.76505 4.90275 4.94854 5.06067 5.19599 5.31265 5.33669 5.48557 5.55170 5.64321 5.66575 5.72387 5.81550 5.88743 6.03880 6.05790 6.10219 6.23367 6.24842 6.29632 6.34364 6.40011 6.43881 6.50059 6.66779 6.73772 6.84243 6.97075 7.07236 7.31506 7.36139 7.52971 7.65596 7.70087 7.81080 7.95368 8.35689 8.53162 8.66350 9.90693 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010344 B = 0.006413 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.142719 B = 4364.953404 C = 5633.399692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 H 0.079 0.921 4 C -0.103 4.103 5 C -0.102 4.102 6 H 0.086 0.914 7 C 0.083 3.917 8 O -0.568 6.568 9 C 0.137 3.863 10 N -0.988 5.988 11 S 2.704 3.296 12 O -0.994 6.994 13 O -0.974 6.974 14 C -0.774 4.774 15 C -0.005 4.005 16 C -0.247 4.247 17 C -0.077 4.077 18 C -0.156 4.156 19 C 0.194 3.806 20 C -0.477 4.477 21 H 0.113 0.887 22 C 0.083 3.917 23 N -0.781 5.781 24 Si 0.903 3.097 25 H -0.264 1.264 26 H -0.274 1.274 27 H -0.250 1.250 28 C 0.130 3.870 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.047 0.953 36 H 0.375 0.625 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.121 0.879 43 H 0.286 0.714 44 H 0.098 0.902 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.630 2.967 -10.630 11.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.126 4.126 3 H 0.097 0.903 4 C -0.140 4.140 5 C -0.123 4.123 6 H 0.104 0.896 7 C 0.004 3.996 8 O -0.373 6.373 9 C 0.011 3.989 10 N -0.823 5.823 11 S 2.803 3.197 12 O -0.985 6.985 13 O -0.965 6.965 14 C -0.869 4.869 15 C -0.025 4.025 16 C -0.267 4.267 17 C -0.096 4.096 18 C -0.176 4.176 19 C 0.190 3.810 20 C -0.506 4.506 21 H 0.131 0.869 22 C -0.138 4.138 23 N -0.405 5.405 24 Si 0.726 3.274 25 H -0.188 1.188 26 H -0.199 1.199 27 H -0.174 1.174 28 C 0.004 3.996 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.221 0.779 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.139 0.861 43 H 0.097 0.903 44 H 0.116 0.884 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.565 3.271 -9.950 10.590 hybrid contribution 1.431 0.233 -0.197 1.463 sum -0.134 3.504 -10.147 10.736 Atomic orbital electron populations 1.21913 0.95296 1.02220 1.01463 1.21434 0.96362 0.99210 0.95582 0.90265 1.21462 1.00655 0.94234 0.97689 1.21541 1.02225 0.94748 0.93747 0.89607 1.22200 0.96351 0.83838 0.97184 1.86570 1.72724 1.28743 1.49283 1.21214 0.99885 0.94771 0.83054 1.57477 1.75327 1.18460 1.31027 1.00985 0.73513 0.72675 0.72504 1.93448 1.66214 1.61030 1.77765 1.93456 1.78513 1.56260 1.68256 1.29970 1.26326 1.04465 1.26092 1.20268 0.95551 0.92336 0.94328 1.20506 1.00852 0.97672 1.07656 1.20907 0.96376 0.94947 0.97397 1.21463 1.01717 0.92922 1.01457 1.17016 0.86992 0.92503 0.84509 1.20426 0.95284 0.91941 1.42916 0.86949 1.25946 0.94879 1.01456 0.91497 1.69793 0.99065 1.38696 1.32931 0.86365 0.79349 0.81491 0.80216 1.18840 1.19933 1.17363 1.21448 1.00553 0.79754 0.97826 0.92376 0.92215 0.93061 0.91562 0.92105 0.93797 0.93521 0.77871 0.91963 0.89057 0.87447 0.88682 0.88829 0.86147 0.90344 0.88355 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.69 37.16 0.32 -1.80 16 2 C -0.11 -1.47 3.21 -90.72 -0.29 -1.76 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.10 -1.25 4.71 -26.69 -0.13 -1.38 16 5 C -0.10 -1.42 2.23 -90.50 -0.20 -1.62 16 6 H 0.09 1.29 6.33 -51.93 -0.33 0.96 16 7 C 0.08 0.93 6.43 37.16 0.24 1.17 16 8 O -0.57 -7.02 13.31 -35.23 -0.47 -7.49 16 9 C 0.14 2.33 5.57 -3.71 -0.02 2.31 16 10 N -0.99 -18.93 2.68 -113.76 -0.30 -19.24 16 11 S 2.70 61.40 5.08 -107.50 -0.55 60.85 16 12 O -0.99 -23.64 15.80 -57.17 -0.90 -24.55 16 13 O -0.97 -23.70 14.33 -57.17 -0.82 -24.52 16 14 C -0.77 -18.98 5.96 -38.87 -0.23 -19.21 16 15 C 0.00 -0.12 9.53 -39.66 -0.38 -0.49 16 16 C -0.25 -5.51 10.05 -39.29 -0.39 -5.90 16 17 C -0.08 -1.76 10.02 -39.66 -0.40 -2.16 16 18 C -0.16 -3.87 8.64 -38.87 -0.34 -4.21 16 19 C 0.19 4.96 5.51 -106.82 -0.59 4.37 16 20 C -0.48 -11.69 6.72 -37.74 -0.25 -11.94 16 21 H 0.11 2.76 4.15 -52.48 -0.22 2.54 16 22 C 0.08 1.89 5.23 -17.34 -0.09 1.80 16 23 N -0.78 -18.25 11.06 55.55 0.61 -17.64 16 24 Si 0.90 17.20 29.57 -169.99 -5.03 12.17 16 25 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 26 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 27 H -0.25 -4.62 7.11 56.52 0.40 -4.22 16 28 C 0.13 2.28 4.25 -3.93 -0.02 2.27 16 29 H 0.06 0.90 5.97 -51.93 -0.31 0.59 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.38 2.71 9.12 45.56 0.42 3.13 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.09 1.69 6.96 -51.93 -0.36 1.33 16 39 H 0.11 2.35 7.33 -52.49 -0.38 1.97 16 40 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 41 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 42 H 0.12 3.01 6.46 -52.49 -0.34 2.67 16 43 H 0.29 6.05 8.30 -40.82 -0.34 5.72 16 44 H 0.10 1.88 5.55 -51.93 -0.29 1.59 16 45 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 LS Contribution 359.44 15.07 5.42 5.42 Total: -1.00 -30.14 359.44 -10.40 -40.54 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -5.60 Total: 12.99 kcal Atomic # 6 Polarization: -35.79 SS G_CDS: -2.77 Total: -38.55 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.31 Total: -36.88 kcal Atomic # 8 Polarization: -54.36 SS G_CDS: -2.19 Total: -56.55 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Atomic # 16 Polarization: 61.40 SS G_CDS: -0.55 Total: 60.85 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.14 -10.40 -40.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601445614.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.811 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds