Wall clock time and date at job start Tue Mar 31 2020 23:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.49976 * 2 1 4 4 C 1.53039 * 109.49627 * 239.93286 * 2 1 3 5 5 C 1.53039 * 109.54158 * 301.40975 * 4 2 1 6 6 H 1.09003 * 109.49386 * 58.58759 * 5 4 2 7 7 C 1.52999 * 109.52757 * 178.66758 * 5 4 2 8 8 O 1.42894 * 109.47145 * 184.85921 * 7 5 4 9 9 C 1.53188 * 109.31430 * 298.63887 * 5 4 2 10 10 N 1.46930 * 108.77614 * 54.63197 * 9 5 4 11 11 S 1.65600 * 120.63050 * 126.36947 * 10 9 5 12 12 O 1.42101 * 106.40293 * 328.87471 * 11 10 9 13 13 O 1.42101 * 106.39916 * 195.95930 * 11 10 9 14 14 C 1.76195 * 107.22015 * 82.41632 * 11 10 9 15 15 C 1.37641 * 120.12847 * 244.13819 * 14 11 10 16 16 C 1.38614 * 120.24832 * 179.97438 * 15 14 11 17 17 C 1.38662 * 120.50244 * 359.97438 * 16 15 14 18 18 C 1.37595 * 120.24676 * 0.02562 * 17 16 15 19 19 C 1.40699 * 120.12884 * 64.38588 * 14 11 10 20 20 C 1.41395 * 120.24330 * 0.02663 * 19 14 11 21 21 H 1.08005 * 120.00392 * 31.73790 * 20 19 14 22 22 C 1.39948 * 119.99951 * 211.74043 * 20 19 14 23 23 N 1.30816 * 120.00370 * 11.21445 * 22 20 19 24 24 Si 1.86808 * 119.99813 * 191.21215 * 22 20 19 25 25 H 1.48503 * 109.47007 * 89.99990 * 24 22 20 26 26 H 1.48506 * 109.46847 * 210.00047 * 24 22 20 27 27 H 1.48503 * 109.47133 * 329.99764 * 24 22 20 28 28 C 1.46921 * 118.73633 * 306.64139 * 10 9 5 29 29 H 1.09006 * 109.46932 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.46969 * 300.06545 * 1 2 3 31 31 H 1.09001 * 109.47106 * 60.06819 * 1 2 3 32 32 H 1.09003 * 109.45794 * 181.39497 * 4 2 1 33 33 H 1.09004 * 109.46060 * 61.43705 * 4 2 1 34 34 H 1.09007 * 109.47097 * 304.85616 * 7 5 4 35 35 H 1.09004 * 109.46991 * 64.85444 * 7 5 4 36 36 H 0.96701 * 114.00199 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.58648 * 294.84262 * 9 5 4 38 38 H 1.09005 * 109.70418 * 174.48491 * 9 5 4 39 39 H 1.07997 * 119.87454 * 359.97402 * 15 14 11 40 40 H 1.07995 * 119.75068 * 180.02562 * 16 15 14 41 41 H 1.07999 * 119.87425 * 180.02562 * 17 16 15 42 42 H 1.08000 * 120.12719 * 179.97438 * 18 17 16 43 43 H 0.96999 * 120.00358 * 179.97438 * 23 22 20 44 44 H 1.09004 * 109.58302 * 173.14369 * 28 10 9 45 45 H 1.08997 * 109.58931 * 293.57062 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2485 5 6 1.5031 -2.1555 -1.2665 6 1 0.4133 -2.1352 -1.2546 7 6 1.9867 -2.8674 -2.5315 8 8 1.3933 -4.1652 -2.6041 9 6 2.0141 -2.9040 -0.0315 10 7 1.6516 -2.1384 1.1691 11 16 0.8191 -2.8559 2.4078 12 8 -0.0045 -3.8505 1.8147 13 8 0.3077 -1.8013 3.2113 14 6 1.9964 -3.7120 3.4005 15 6 1.9434 -5.0832 3.5071 16 6 2.8687 -5.7593 4.2870 17 6 3.8572 -5.0645 4.9674 18 6 3.9292 -3.6936 4.8753 19 6 2.9912 -2.9961 4.0915 20 6 3.0520 -1.5868 3.9941 21 1 2.1453 -1.0150 3.8617 22 6 4.2869 -0.9328 4.0692 23 7 5.3970 -1.6222 4.0085 24 14 4.3502 0.9248 4.2562 25 1 4.3562 1.2772 5.6988 26 1 5.5841 1.4451 3.6143 27 1 3.1606 1.5288 3.6040 28 6 2.0365 -0.7227 1.2470 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5148 0.8893 31 1 -0.3633 0.5128 -0.8906 32 1 3.1305 -0.7441 -1.2354 33 1 1.6988 -0.1953 -2.1390 34 1 1.6987 -2.2867 -3.4079 35 1 3.0720 -2.9651 -2.5010 36 1 1.6562 -4.6749 -3.3827 37 1 3.0980 -3.0043 -0.0875 38 1 1.5575 -3.8928 0.0140 39 1 1.1780 -5.6345 2.9812 40 1 2.8199 -6.8353 4.3646 41 1 4.5732 -5.6015 5.5718 42 1 4.6997 -3.1543 5.4064 43 1 6.2530 -1.1689 4.0602 44 1 1.5926 -0.2717 2.1345 45 1 3.1222 -0.6414 1.2973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601445614.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:49 Heat of formation + Delta-G solvation = -138.972585 kcal Electronic energy + Delta-G solvation = -29733.710226 eV Core-core repulsion = 25841.234257 eV Total energy + Delta-G solvation = -3892.475969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.25161 -39.39301 -38.19108 -37.45165 -36.70706 -35.66634 -34.04928 -33.15697 -32.01059 -31.38425 -27.96944 -27.31717 -26.60917 -25.38491 -23.43689 -22.95342 -22.42979 -20.44569 -19.64853 -19.20670 -18.72862 -18.08105 -17.77958 -17.13049 -16.96894 -16.15472 -16.06240 -15.80036 -15.42762 -15.15707 -14.94669 -14.89984 -14.70565 -14.45684 -14.26120 -14.11629 -13.76922 -13.40721 -13.18882 -13.06672 -12.99618 -12.95559 -12.86598 -12.83612 -12.44322 -12.35040 -12.19212 -12.08932 -11.98872 -11.71595 -11.64450 -11.33775 -11.18411 -11.09951 -10.99803 -10.79950 -9.89983 -9.65932 -9.42365 -8.77906 -6.61855 -0.20063 0.51485 0.95113 1.38700 1.48224 1.52104 2.17035 2.25360 2.62226 2.98383 3.37114 3.47061 3.64476 3.86181 3.92775 3.96087 4.12622 4.27925 4.31614 4.43000 4.46862 4.48904 4.61418 4.67885 4.71572 4.77015 4.77952 4.89384 4.95275 4.98141 5.06306 5.10278 5.13656 5.17169 5.26523 5.30508 5.32149 5.47963 5.52403 5.55737 5.68058 5.82094 5.91401 5.97021 6.12885 6.50675 6.71624 6.81854 7.03187 8.19328 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010344 B = 0.006413 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.142719 B = 4364.953404 C = 5633.399692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.103 4.103 3 H 0.106 0.894 4 C -0.096 4.096 5 C -0.101 4.101 6 H 0.071 0.929 7 C 0.085 3.915 8 O -0.597 6.597 9 C 0.132 3.868 10 N -0.983 5.983 11 S 2.714 3.286 12 O -1.011 7.011 13 O -0.997 6.997 14 C -0.797 4.797 15 C -0.022 4.022 16 C -0.249 4.249 17 C -0.077 4.077 18 C -0.182 4.182 19 C 0.167 3.833 20 C -0.494 4.494 21 H 0.105 0.895 22 C 0.054 3.946 23 N -0.802 5.802 24 Si 0.957 3.043 25 H -0.265 1.265 26 H -0.256 1.256 27 H -0.243 1.243 28 C 0.124 3.876 29 H 0.035 0.965 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.396 0.604 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.116 0.884 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.112 0.888 43 H 0.295 0.705 44 H 0.077 0.923 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.333 4.254 -12.624 13.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.123 4.123 3 H 0.124 0.876 4 C -0.134 4.134 5 C -0.121 4.121 6 H 0.090 0.910 7 C 0.007 3.993 8 O -0.405 6.405 9 C 0.007 3.993 10 N -0.820 5.820 11 S 2.813 3.187 12 O -1.002 7.002 13 O -0.988 6.988 14 C -0.891 4.891 15 C -0.042 4.042 16 C -0.269 4.269 17 C -0.095 4.095 18 C -0.202 4.202 19 C 0.163 3.837 20 C -0.522 4.522 21 H 0.122 0.878 22 C -0.165 4.165 23 N -0.426 5.426 24 Si 0.776 3.224 25 H -0.190 1.190 26 H -0.180 1.180 27 H -0.166 1.166 28 C -0.001 4.001 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.245 0.755 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.134 0.866 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.130 0.870 43 H 0.106 0.894 44 H 0.095 0.905 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.591 4.523 -11.951 12.792 hybrid contribution 1.145 -0.259 0.430 1.250 sum 0.554 4.263 -11.521 12.297 Atomic orbital electron populations 1.21927 0.95545 1.01065 1.02449 1.21476 0.96148 1.00254 0.94396 0.87581 1.21459 1.01120 0.92880 0.97914 1.21553 1.01390 0.95960 0.93228 0.91033 1.22219 0.96842 0.83646 0.96606 1.86518 1.73327 1.29635 1.51040 1.21385 0.99960 0.94253 0.83746 1.57233 1.75120 1.19191 1.30469 1.00506 0.73472 0.72128 0.72623 1.93410 1.67019 1.61751 1.78016 1.93410 1.79267 1.56745 1.69378 1.30293 1.26589 1.05262 1.26916 1.20565 0.96336 0.92359 0.94906 1.20888 1.00035 0.99345 1.06593 1.21252 0.96761 0.94386 0.97133 1.21528 1.02154 0.94061 1.02412 1.17346 0.87741 0.93410 0.85235 1.20490 0.95858 0.91794 1.44009 0.87759 1.26611 0.93954 1.05353 0.90547 1.69812 0.99738 1.40537 1.32507 0.85561 0.80280 0.76436 0.80123 1.19032 1.17979 1.16620 1.21578 1.00247 0.78931 0.99307 0.94607 0.93333 0.89993 0.90659 0.88746 0.90842 0.92361 0.75452 0.91657 0.91256 0.86614 0.85472 0.85776 0.86978 0.89361 0.90467 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 8.69 71.98 0.63 -3.44 16 2 C -0.10 -2.64 3.21 -10.86 -0.03 -2.67 16 3 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.10 -2.03 4.71 30.62 0.14 -1.88 16 5 C -0.10 -2.63 2.23 -10.72 -0.02 -2.65 16 6 H 0.07 2.08 6.33 -2.39 -0.02 2.07 16 7 C 0.08 1.68 6.43 71.98 0.46 2.15 16 8 O -0.60 -13.83 13.31 -148.98 -1.98 -15.81 16 9 C 0.13 4.52 5.57 86.36 0.48 5.00 16 10 N -0.98 -38.47 2.68 -513.84 -1.38 -39.85 16 11 S 2.71 128.28 5.08 -56.49 -0.29 127.99 16 12 O -1.01 -50.01 15.80 -128.00 -2.02 -52.04 16 13 O -1.00 -50.76 14.33 -128.00 -1.83 -52.59 16 14 C -0.80 -40.46 5.96 22.73 0.14 -40.32 16 15 C -0.02 -1.05 9.53 22.22 0.21 -0.84 16 16 C -0.25 -10.98 10.05 22.46 0.23 -10.76 16 17 C -0.08 -3.46 10.02 22.22 0.22 -3.24 16 18 C -0.18 -9.23 8.64 22.73 0.20 -9.03 16 19 C 0.17 8.81 5.51 -21.29 -0.12 8.69 16 20 C -0.49 -24.85 6.72 23.46 0.16 -24.70 16 21 H 0.10 5.33 4.15 -2.91 -0.01 5.32 16 22 C 0.05 2.49 5.23 85.26 0.45 2.94 16 23 N -0.80 -37.63 11.06 21.83 0.24 -37.39 16 24 Si 0.96 34.61 29.57 68.60 2.03 36.64 16 25 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 26 H -0.26 -8.47 7.11 99.48 0.71 -7.76 16 27 H -0.24 -8.46 7.11 99.48 0.71 -7.75 16 28 C 0.12 4.37 4.25 86.22 0.37 4.74 16 29 H 0.03 1.10 5.97 -2.38 -0.01 1.09 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.40 4.98 9.12 -74.06 -0.68 4.30 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.07 2.66 6.96 -2.38 -0.02 2.64 16 39 H 0.12 5.19 7.33 -2.91 -0.02 5.17 16 40 H 0.13 4.70 8.06 -2.91 -0.02 4.67 16 41 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 42 H 0.11 5.75 6.46 -2.91 -0.02 5.73 16 43 H 0.30 12.39 8.30 -92.71 -0.77 11.62 16 44 H 0.08 3.03 5.55 -2.39 -0.01 3.02 16 45 H 0.07 2.34 8.11 -2.39 -0.02 2.32 16 Total: -1.00 -67.29 359.44 -1.39 -68.67 By element: Atomic # 1 Polarization: 40.05 SS G_CDS: 0.34 Total: 40.40 kcal Atomic # 6 Polarization: -79.52 SS G_CDS: 3.50 Total: -76.02 kcal Atomic # 7 Polarization: -76.10 SS G_CDS: -1.14 Total: -77.24 kcal Atomic # 8 Polarization: -114.60 SS G_CDS: -5.84 Total: -120.44 kcal Atomic # 14 Polarization: 34.61 SS G_CDS: 2.03 Total: 36.64 kcal Atomic # 16 Polarization: 128.28 SS G_CDS: -0.29 Total: 127.99 kcal Total: -67.29 -1.39 -68.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601445614.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.298 kcal (2) G-P(sol) polarization free energy of solvation -67.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds