Wall clock time and date at job start Tue Mar 31 2020 23:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.49415 * 2 1 4 4 C 1.53038 * 109.49833 * 239.93539 * 2 1 3 5 5 C 1.53041 * 109.53778 * 178.65087 * 4 2 1 6 6 H 1.09000 * 109.49832 * 301.38333 * 5 4 2 7 7 C 1.52996 * 109.49984 * 181.31425 * 5 4 2 8 8 O 1.42895 * 109.47385 * 174.99894 * 7 5 4 9 9 C 1.53194 * 109.31298 * 61.36394 * 5 4 2 10 10 N 1.46926 * 108.77613 * 305.36333 * 9 5 4 11 11 S 1.65596 * 120.63549 * 233.58821 * 10 9 5 12 12 O 1.42097 * 106.40170 * 30.08193 * 11 10 9 13 13 O 1.42101 * 106.40701 * 163.00448 * 11 10 9 14 14 C 1.76207 * 107.21730 * 276.54584 * 11 10 9 15 15 C 1.37636 * 120.13017 * 116.13254 * 14 11 10 16 16 C 1.38608 * 120.24598 * 179.71919 * 15 14 11 17 17 C 1.38655 * 120.50657 * 0.55767 * 16 15 14 18 18 C 1.37605 * 120.24150 * 359.72257 * 17 16 15 19 19 C 1.40701 * 120.12226 * 296.40370 * 14 11 10 20 20 C 1.41390 * 120.24789 * 359.97438 * 19 14 11 21 21 H 1.08008 * 119.99732 * 332.52001 * 20 19 14 22 22 C 1.39941 * 120.00138 * 152.53269 * 20 19 14 23 23 N 1.30828 * 120.00244 * 162.34875 * 22 20 19 24 24 Si 1.86798 * 119.99881 * 342.34252 * 22 20 19 25 25 H 1.48494 * 109.47281 * 95.20700 * 24 22 20 26 26 H 1.48507 * 109.47047 * 215.20665 * 24 22 20 27 27 H 1.48498 * 109.47383 * 335.20393 * 24 22 20 28 28 C 1.46935 * 118.73688 * 53.61226 * 10 9 5 29 29 H 1.09001 * 109.46808 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47125 * 300.06473 * 1 2 3 31 31 H 1.08999 * 109.47113 * 60.06913 * 1 2 3 32 32 H 1.08998 * 109.46371 * 58.63083 * 4 2 1 33 33 H 1.09002 * 109.44849 * 298.66214 * 4 2 1 34 34 H 1.08999 * 109.46963 * 54.99775 * 7 5 4 35 35 H 1.08997 * 109.47144 * 295.00340 * 7 5 4 36 36 H 0.96697 * 114.00169 * 180.02562 * 8 7 5 37 37 H 1.08995 * 109.58721 * 65.15151 * 9 5 4 38 38 H 1.09004 * 109.58681 * 185.58041 * 9 5 4 39 39 H 1.08002 * 119.87396 * 359.97438 * 15 14 11 40 40 H 1.08005 * 119.74636 * 180.25892 * 16 15 14 41 41 H 1.07996 * 119.88200 * 179.74349 * 17 16 15 42 42 H 1.08001 * 120.11900 * 180.02562 * 18 17 16 43 43 H 0.96992 * 120.00240 * 179.97438 * 23 22 20 44 44 H 1.09000 * 109.58552 * 186.60542 * 28 10 9 45 45 H 1.08996 * 109.70253 * 66.24787 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7227 -1.2485 5 6 3.5709 -0.6939 -1.2666 6 1 3.9155 0.3401 -1.2552 7 6 4.0799 -1.3879 -2.5315 8 8 5.5010 -1.2592 -2.6065 9 6 4.1060 -1.4255 -0.0315 10 7 3.5054 -0.8282 1.1690 11 16 4.4594 -0.2839 2.4082 12 8 5.6817 0.1372 1.8184 13 8 3.6430 0.5698 3.1982 14 6 4.8475 -1.6751 3.4176 15 6 6.1518 -2.0967 3.5412 16 6 6.4605 -3.1872 4.3391 17 6 5.4604 -3.8724 5.0121 18 6 4.1488 -3.4720 4.8987 19 6 3.8243 -2.3626 4.0959 20 6 2.4802 -1.9418 3.9724 21 1 2.2557 -0.9068 3.7601 22 6 1.4406 -2.8661 4.1254 23 7 0.2226 -2.4484 4.3567 24 14 1.7922 -4.6963 3.9993 25 1 2.0068 -5.2540 5.3587 26 1 0.6383 -5.3792 3.3607 27 1 3.0107 -4.9110 3.1782 28 6 2.0420 -0.7237 1.2495 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5148 0.8894 31 1 -0.3633 0.5128 -0.8906 32 1 1.6578 -0.2243 -2.1390 33 1 1.6973 -1.7571 -1.2352 34 1 3.6263 -0.9246 -3.4077 35 1 3.8119 -2.4440 -2.4994 36 1 5.8932 -1.6766 -3.3856 37 1 3.8387 -2.4806 -0.0875 38 1 5.1903 -1.3228 0.0128 39 1 6.9382 -1.5734 3.0176 40 1 7.4872 -3.5086 4.4336 41 1 5.7118 -4.7233 5.6279 42 1 3.3715 -4.0070 5.4241 43 1 -0.4979 -3.0890 4.4624 44 1 1.7644 -0.1580 2.1389 45 1 1.6045 -1.7207 1.2993 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601445615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:55 Heat of formation + Delta-G solvation = -118.311093 kcal Electronic energy + Delta-G solvation = -29559.416387 eV Core-core repulsion = 25667.836367 eV Total energy + Delta-G solvation = -3891.580020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -38.87582 -37.85669 -36.59797 -36.28859 -34.88169 -33.92200 -33.04935 -32.17829 -30.71764 -30.08638 -26.52873 -25.72906 -25.32832 -23.96907 -22.03401 -21.18602 -20.62423 -19.87524 -18.10331 -17.70776 -17.31599 -17.12438 -16.35060 -15.70292 -15.41629 -14.93513 -14.54656 -14.24721 -14.13502 -13.93384 -13.64088 -13.53917 -13.41202 -13.11310 -12.84218 -12.46046 -12.29885 -12.23456 -11.95956 -11.74794 -11.39133 -11.29025 -11.28606 -11.21142 -11.04545 -10.96878 -10.75340 -10.71957 -10.56744 -10.45427 -10.22689 -10.01037 -9.98506 -9.88347 -9.45956 -9.28027 -8.37750 -8.17403 -7.84903 -7.24483 -4.89081 1.46386 2.09933 2.53138 2.91713 3.00806 3.12120 3.73340 3.82147 4.18034 4.22455 4.70010 4.86828 4.95680 5.04968 5.12741 5.17666 5.32230 5.43048 5.52994 5.60015 5.61636 5.78850 5.81448 5.84625 5.89297 5.91646 5.97750 6.04510 6.18984 6.21391 6.31306 6.37885 6.39110 6.43073 6.46253 6.62274 6.73746 6.79811 6.94815 7.10713 7.19136 7.34507 7.44177 7.57003 7.62197 7.83525 8.10336 8.31481 8.50812 9.72518 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010589 B = 0.006223 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.717870 B = 4498.408940 C = 5561.489373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.071 0.929 4 C -0.103 4.103 5 C -0.101 4.101 6 H 0.082 0.918 7 C 0.083 3.917 8 O -0.569 6.569 9 C 0.134 3.866 10 N -0.993 5.993 11 S 2.703 3.297 12 O -0.991 6.991 13 O -0.969 6.969 14 C -0.772 4.772 15 C 0.018 3.982 16 C -0.261 4.261 17 C -0.043 4.043 18 C -0.238 4.238 19 C 0.164 3.836 20 C -0.454 4.454 21 H 0.128 0.872 22 C 0.092 3.908 23 N -0.773 5.773 24 Si 0.906 3.094 25 H -0.268 1.268 26 H -0.287 1.287 27 H -0.240 1.240 28 C 0.132 3.868 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.375 0.625 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.292 0.708 44 H 0.103 0.897 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.172 -1.890 -11.671 11.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 H 0.090 0.910 4 C -0.141 4.141 5 C -0.121 4.121 6 H 0.100 0.900 7 C 0.005 3.995 8 O -0.373 6.373 9 C 0.008 3.992 10 N -0.828 5.828 11 S 2.802 3.198 12 O -0.982 6.982 13 O -0.959 6.959 14 C -0.866 4.866 15 C -0.002 4.002 16 C -0.282 4.282 17 C -0.062 4.062 18 C -0.258 4.258 19 C 0.159 3.841 20 C -0.480 4.480 21 H 0.146 0.854 22 C -0.132 4.132 23 N -0.394 5.394 24 Si 0.732 3.268 25 H -0.194 1.194 26 H -0.214 1.214 27 H -0.163 1.163 28 C 0.007 3.993 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.222 0.778 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.131 0.869 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.122 0.878 43 H 0.102 0.898 44 H 0.121 0.879 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.015 -0.654 -10.943 10.963 hybrid contribution 0.014 -2.084 -0.146 2.089 sum 0.030 -2.738 -11.090 11.423 Atomic orbital electron populations 1.21735 0.94559 1.02069 1.01686 1.21517 0.95717 1.00022 0.95387 0.91025 1.21516 0.93589 1.01125 0.97839 1.21502 0.95677 1.01194 0.93711 0.89963 1.22194 0.81137 0.99030 0.97180 1.86568 1.20600 1.80916 1.49265 1.21249 0.98470 0.96246 0.83200 1.57590 1.16186 1.78115 1.30914 1.01064 0.71906 0.74315 0.72524 1.93453 1.45435 1.81525 1.77796 1.93494 1.68762 1.64841 1.68811 1.29946 1.00748 1.29453 1.26450 1.20396 0.93927 0.93068 0.92763 1.20481 0.97674 1.01903 1.08110 1.20817 0.93413 0.96436 0.95518 1.21169 0.95643 1.02966 1.05997 1.17057 0.91914 0.88806 0.86330 1.20402 0.88575 0.99952 1.39118 0.85435 1.26212 0.94428 1.02277 0.90320 1.69679 1.01641 1.38846 1.29215 0.86410 0.79317 0.80958 0.80078 1.19365 1.21392 1.16337 1.21590 0.78371 1.01355 0.98004 0.92503 0.91992 0.92993 0.92073 0.91592 0.93697 0.93503 0.77848 0.92034 0.88899 0.86904 0.88153 0.88363 0.87782 0.89762 0.87867 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.20 37.16 0.34 -1.47 16 2 C -0.11 -1.53 2.87 -90.50 -0.26 -1.79 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.10 -1.27 4.45 -26.69 -0.12 -1.39 16 5 C -0.10 -1.38 2.58 -90.50 -0.23 -1.61 16 6 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 7 C 0.08 0.91 6.43 37.16 0.24 1.15 16 8 O -0.57 -6.78 13.31 -35.23 -0.47 -7.25 16 9 C 0.13 2.23 5.57 -3.71 -0.02 2.21 16 10 N -0.99 -18.98 3.23 -113.51 -0.37 -19.34 16 11 S 2.70 60.76 5.09 -107.50 -0.55 60.21 16 12 O -0.99 -23.04 15.76 -57.17 -0.90 -23.95 16 13 O -0.97 -24.12 14.49 -57.17 -0.83 -24.95 16 14 C -0.77 -18.28 5.96 -38.87 -0.23 -18.51 16 15 C 0.02 0.41 9.53 -39.66 -0.38 0.03 16 16 C -0.26 -5.45 10.05 -39.29 -0.39 -5.85 16 17 C -0.04 -0.91 10.02 -39.66 -0.40 -1.31 16 18 C -0.24 -5.58 7.12 -38.87 -0.28 -5.85 16 19 C 0.16 4.05 5.17 -106.83 -0.55 3.50 16 20 C -0.45 -11.33 7.30 -37.75 -0.28 -11.61 16 21 H 0.13 3.35 3.92 -52.48 -0.21 3.15 16 22 C 0.09 2.16 5.42 -17.34 -0.09 2.07 16 23 N -0.77 -18.25 13.93 55.55 0.77 -17.48 16 24 Si 0.91 18.98 24.43 -169.99 -4.15 14.82 16 25 H -0.27 -5.51 6.68 56.52 0.38 -5.13 16 26 H -0.29 -5.71 7.11 56.52 0.40 -5.31 16 27 H -0.24 -5.19 6.76 56.52 0.38 -4.81 16 28 C 0.13 2.39 4.10 -3.70 -0.02 2.38 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.38 2.55 9.12 45.56 0.42 2.97 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.09 1.65 6.93 -51.93 -0.36 1.29 16 39 H 0.11 2.31 7.33 -52.49 -0.38 1.92 16 40 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 41 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.10 2.36 4.37 -52.49 -0.23 2.13 16 43 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 44 H 0.10 2.12 5.39 -51.93 -0.28 1.84 16 45 H 0.07 1.29 8.05 -51.93 -0.42 0.88 16 LS Contribution 357.51 15.07 5.39 5.39 Total: -1.00 -30.28 357.51 -9.49 -39.76 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -5.71 Total: 10.85 kcal Atomic # 6 Polarization: -35.40 SS G_CDS: -2.67 Total: -38.06 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.41 Total: -36.82 kcal Atomic # 8 Polarization: -53.95 SS G_CDS: -2.20 Total: -56.14 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.15 Total: 14.82 kcal Atomic # 16 Polarization: 60.76 SS G_CDS: -0.55 Total: 60.21 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.28 -9.49 -39.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601445615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.548 kcal (2) G-P(sol) polarization free energy of solvation -30.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds