Wall clock time and date at job start Tue Mar 31 2020 23:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.49415 * 2 1 4 4 C 1.53038 * 109.49833 * 239.93539 * 2 1 3 5 5 C 1.53041 * 109.53778 * 178.65087 * 4 2 1 6 6 H 1.09000 * 109.49832 * 301.38333 * 5 4 2 7 7 C 1.52996 * 109.49984 * 181.31425 * 5 4 2 8 8 O 1.42895 * 109.47385 * 174.99894 * 7 5 4 9 9 C 1.53194 * 109.31298 * 61.36394 * 5 4 2 10 10 N 1.46926 * 108.77613 * 305.36333 * 9 5 4 11 11 S 1.65596 * 120.63549 * 233.58821 * 10 9 5 12 12 O 1.42097 * 106.40170 * 30.08193 * 11 10 9 13 13 O 1.42101 * 106.40701 * 163.00448 * 11 10 9 14 14 C 1.76207 * 107.21730 * 276.54584 * 11 10 9 15 15 C 1.37636 * 120.13017 * 116.13254 * 14 11 10 16 16 C 1.38608 * 120.24598 * 179.71919 * 15 14 11 17 17 C 1.38655 * 120.50657 * 0.55767 * 16 15 14 18 18 C 1.37605 * 120.24150 * 359.72257 * 17 16 15 19 19 C 1.40701 * 120.12226 * 296.40370 * 14 11 10 20 20 C 1.41390 * 120.24789 * 359.97438 * 19 14 11 21 21 H 1.08008 * 119.99732 * 332.52001 * 20 19 14 22 22 C 1.39941 * 120.00138 * 152.53269 * 20 19 14 23 23 N 1.30828 * 120.00244 * 162.34875 * 22 20 19 24 24 Si 1.86798 * 119.99881 * 342.34252 * 22 20 19 25 25 H 1.48494 * 109.47281 * 95.20700 * 24 22 20 26 26 H 1.48507 * 109.47047 * 215.20665 * 24 22 20 27 27 H 1.48498 * 109.47383 * 335.20393 * 24 22 20 28 28 C 1.46935 * 118.73688 * 53.61226 * 10 9 5 29 29 H 1.09001 * 109.46808 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47125 * 300.06473 * 1 2 3 31 31 H 1.08999 * 109.47113 * 60.06913 * 1 2 3 32 32 H 1.08998 * 109.46371 * 58.63083 * 4 2 1 33 33 H 1.09002 * 109.44849 * 298.66214 * 4 2 1 34 34 H 1.08999 * 109.46963 * 54.99775 * 7 5 4 35 35 H 1.08997 * 109.47144 * 295.00340 * 7 5 4 36 36 H 0.96697 * 114.00169 * 180.02562 * 8 7 5 37 37 H 1.08995 * 109.58721 * 65.15151 * 9 5 4 38 38 H 1.09004 * 109.58681 * 185.58041 * 9 5 4 39 39 H 1.08002 * 119.87396 * 359.97438 * 15 14 11 40 40 H 1.08005 * 119.74636 * 180.25892 * 16 15 14 41 41 H 1.07996 * 119.88200 * 179.74349 * 17 16 15 42 42 H 1.08001 * 120.11900 * 180.02562 * 18 17 16 43 43 H 0.96992 * 120.00240 * 179.97438 * 23 22 20 44 44 H 1.09000 * 109.58552 * 186.60542 * 28 10 9 45 45 H 1.08996 * 109.70253 * 66.24787 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7227 -1.2485 5 6 3.5709 -0.6939 -1.2666 6 1 3.9155 0.3401 -1.2552 7 6 4.0799 -1.3879 -2.5315 8 8 5.5010 -1.2592 -2.6065 9 6 4.1060 -1.4255 -0.0315 10 7 3.5054 -0.8282 1.1690 11 16 4.4594 -0.2839 2.4082 12 8 5.6817 0.1372 1.8184 13 8 3.6430 0.5698 3.1982 14 6 4.8475 -1.6751 3.4176 15 6 6.1518 -2.0967 3.5412 16 6 6.4605 -3.1872 4.3391 17 6 5.4604 -3.8724 5.0121 18 6 4.1488 -3.4720 4.8987 19 6 3.8243 -2.3626 4.0959 20 6 2.4802 -1.9418 3.9724 21 1 2.2557 -0.9068 3.7601 22 6 1.4406 -2.8661 4.1254 23 7 0.2226 -2.4484 4.3567 24 14 1.7922 -4.6963 3.9993 25 1 2.0068 -5.2540 5.3587 26 1 0.6383 -5.3792 3.3607 27 1 3.0107 -4.9110 3.1782 28 6 2.0420 -0.7237 1.2495 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5148 0.8894 31 1 -0.3633 0.5128 -0.8906 32 1 1.6578 -0.2243 -2.1390 33 1 1.6973 -1.7571 -1.2352 34 1 3.6263 -0.9246 -3.4077 35 1 3.8119 -2.4440 -2.4994 36 1 5.8932 -1.6766 -3.3856 37 1 3.8387 -2.4806 -0.0875 38 1 5.1903 -1.3228 0.0128 39 1 6.9382 -1.5734 3.0176 40 1 7.4872 -3.5086 4.4336 41 1 5.7118 -4.7233 5.6279 42 1 3.3715 -4.0070 5.4241 43 1 -0.4979 -3.0890 4.4624 44 1 1.7644 -0.1580 2.1389 45 1 1.6045 -1.7207 1.2993 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601445615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:54 Heat of formation + Delta-G solvation = -140.658676 kcal Electronic energy + Delta-G solvation = -29560.385451 eV Core-core repulsion = 25667.836367 eV Total energy + Delta-G solvation = -3892.549084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.07107 -39.59872 -38.24208 -37.44354 -36.75609 -35.69245 -34.35132 -33.33792 -32.48034 -31.82559 -27.78264 -27.17331 -26.59046 -25.33552 -23.76637 -22.95349 -21.72354 -21.09244 -19.80021 -19.47786 -18.79410 -18.18759 -18.04186 -17.22557 -17.05492 -16.19158 -16.01581 -15.87741 -15.52110 -15.36712 -15.14096 -14.94980 -14.63730 -14.54766 -14.43210 -14.01483 -13.70563 -13.54589 -13.36156 -13.26976 -13.07597 -13.01017 -12.81287 -12.72008 -12.65686 -12.47349 -12.29611 -12.14243 -11.87917 -11.73064 -11.68136 -11.43349 -11.25473 -11.17903 -11.01253 -10.79832 -10.01750 -9.73973 -9.62557 -9.01766 -6.73163 -0.26842 0.33513 0.77014 1.22805 1.35124 1.44430 2.04906 2.18384 2.46782 2.92793 3.29949 3.35216 3.57260 3.83859 3.91870 3.97647 4.04776 4.17418 4.28401 4.31704 4.40016 4.48772 4.59928 4.60982 4.66307 4.69927 4.73798 4.77226 4.89402 4.91192 4.92897 5.01875 5.05224 5.18971 5.22667 5.28463 5.29439 5.37535 5.47236 5.53101 5.55587 5.67446 5.81621 5.83681 6.07112 6.25595 6.52422 6.67937 7.03905 8.00827 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010589 B = 0.006223 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.717870 B = 4498.408940 C = 5561.489373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 H 0.064 0.936 4 C -0.095 4.095 5 C -0.100 4.100 6 H 0.065 0.935 7 C 0.087 3.913 8 O -0.596 6.596 9 C 0.127 3.873 10 N -0.989 5.989 11 S 2.710 3.290 12 O -1.005 7.005 13 O -1.003 7.003 14 C -0.790 4.790 15 C 0.001 3.999 16 C -0.253 4.253 17 C -0.040 4.040 18 C -0.262 4.262 19 C 0.146 3.854 20 C -0.478 4.478 21 H 0.102 0.898 22 C 0.067 3.933 23 N -0.800 5.800 24 Si 0.951 3.049 25 H -0.259 1.259 26 H -0.269 1.269 27 H -0.251 1.251 28 C 0.135 3.865 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.397 0.603 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.125 0.875 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.108 0.892 43 H 0.303 0.697 44 H 0.069 0.931 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 -4.025 -13.503 14.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.125 4.125 3 H 0.083 0.917 4 C -0.133 4.133 5 C -0.121 4.121 6 H 0.083 0.917 7 C 0.009 3.991 8 O -0.405 6.405 9 C 0.002 3.998 10 N -0.826 5.826 11 S 2.809 3.191 12 O -0.995 6.995 13 O -0.993 6.993 14 C -0.884 4.884 15 C -0.019 4.019 16 C -0.273 4.273 17 C -0.059 4.059 18 C -0.281 4.281 19 C 0.141 3.859 20 C -0.505 4.505 21 H 0.120 0.880 22 C -0.155 4.155 23 N -0.422 5.422 24 Si 0.775 3.225 25 H -0.185 1.185 26 H -0.195 1.195 27 H -0.175 1.175 28 C 0.010 3.990 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.246 0.754 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.143 0.857 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.126 0.874 43 H 0.114 0.886 44 H 0.087 0.913 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.422 -2.787 -12.783 13.090 hybrid contribution 0.014 -1.385 0.443 1.454 sum 0.436 -4.172 -12.340 13.034 Atomic orbital electron populations 1.21707 0.93024 1.02474 1.02347 1.21524 0.96940 0.99389 0.94675 0.91721 1.21488 0.92420 1.01783 0.97564 1.21517 0.96725 1.00146 0.93678 0.91655 1.22182 0.80882 0.99782 0.96281 1.86511 1.21329 1.81578 1.51040 1.21498 0.97645 0.97261 0.83403 1.57368 1.16302 1.78244 1.30720 1.00635 0.71630 0.74196 0.72678 1.93418 1.46179 1.81959 1.77987 1.93444 1.69455 1.66290 1.70147 1.30151 1.01574 1.29573 1.27107 1.20717 0.93599 0.94026 0.93518 1.20961 0.99546 1.00581 1.06203 1.21277 0.92375 0.97132 0.95082 1.21349 0.97104 1.03140 1.06516 1.17273 0.91929 0.89783 0.86891 1.20323 0.89599 0.99342 1.41207 0.88019 1.26715 0.93985 1.05019 0.89750 1.69679 1.02327 1.40333 1.29905 0.85718 0.79217 0.77315 0.80281 1.18470 1.19480 1.17483 1.21555 0.77717 1.00933 0.98813 0.92196 0.93620 0.90048 0.88823 0.90521 0.90919 0.91959 0.75356 0.90915 0.90473 0.85742 0.84448 0.84412 0.87439 0.88624 0.91270 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.20 71.98 0.66 -2.71 16 2 C -0.10 -3.01 2.87 -10.71 -0.03 -3.04 16 3 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 4 C -0.10 -2.12 4.45 30.62 0.14 -1.98 16 5 C -0.10 -2.60 2.58 -10.72 -0.03 -2.63 16 6 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 7 C 0.09 1.64 6.43 71.98 0.46 2.11 16 8 O -0.60 -13.03 13.31 -148.98 -1.98 -15.01 16 9 C 0.13 4.21 5.57 86.36 0.48 4.69 16 10 N -0.99 -39.22 3.23 -513.04 -1.65 -40.88 16 11 S 2.71 127.68 5.09 -56.49 -0.29 127.39 16 12 O -1.00 -48.32 15.76 -128.00 -2.02 -50.34 16 13 O -1.00 -53.46 14.49 -128.00 -1.85 -55.32 16 14 C -0.79 -38.27 5.96 22.73 0.14 -38.13 16 15 C 0.00 0.05 9.53 22.22 0.21 0.26 16 16 C -0.25 -9.90 10.05 22.46 0.23 -9.67 16 17 C -0.04 -1.60 10.02 22.22 0.22 -1.38 16 18 C -0.26 -12.04 7.12 22.73 0.16 -11.88 16 19 C 0.15 7.36 5.17 -21.29 -0.11 7.25 16 20 C -0.48 -24.90 7.30 23.46 0.17 -24.73 16 21 H 0.10 5.75 3.92 -2.91 -0.01 5.74 16 22 C 0.07 3.22 5.42 85.26 0.46 3.69 16 23 N -0.80 -38.76 13.93 21.83 0.30 -38.46 16 24 Si 0.95 38.47 24.43 68.60 1.68 40.15 16 25 H -0.26 -10.05 6.68 99.48 0.66 -9.38 16 26 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 27 H -0.25 -10.52 6.76 99.48 0.67 -9.85 16 28 C 0.13 5.12 4.10 86.36 0.35 5.48 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.40 4.45 9.12 -74.06 -0.68 3.77 16 37 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.08 2.78 6.93 -2.39 -0.02 2.77 16 39 H 0.12 5.04 7.33 -2.91 -0.02 5.02 16 40 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 41 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 42 H 0.11 4.78 4.37 -2.91 -0.01 4.77 16 43 H 0.30 12.94 8.30 -92.71 -0.77 12.17 16 44 H 0.07 3.10 5.39 -2.39 -0.01 3.09 16 45 H 0.06 2.45 8.05 -2.39 -0.02 2.43 16 Total: -1.00 -68.04 357.51 -2.03 -70.07 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: 0.26 Total: 35.08 kcal Atomic # 6 Polarization: -76.21 SS G_CDS: 3.52 Total: -72.69 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -1.35 Total: -79.33 kcal Atomic # 8 Polarization: -114.81 SS G_CDS: -5.86 Total: -120.67 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 1.68 Total: 40.15 kcal Atomic # 16 Polarization: 127.68 SS G_CDS: -0.29 Total: 127.39 kcal Total: -68.04 -2.03 -70.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601445615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.588 kcal (2) G-P(sol) polarization free energy of solvation -68.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds