Wall clock time and date at job start Tue Mar 31 2020 23:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.49524 * 2 1 4 4 C 1.53035 * 109.52672 * 120.08906 * 2 1 3 5 5 C 1.53043 * 109.53978 * 181.33604 * 4 2 1 6 6 H 1.09000 * 109.49687 * 58.60988 * 5 4 2 7 7 C 1.52994 * 109.49866 * 178.67884 * 5 4 2 8 8 O 1.42897 * 109.47214 * 184.99722 * 7 5 4 9 9 C 1.53625 * 109.23793 * 298.50626 * 5 4 2 10 10 N 1.46928 * 108.54423 * 54.85444 * 9 5 4 11 11 S 1.65597 * 120.62940 * 126.36504 * 10 9 5 12 12 O 1.42104 * 106.40298 * 162.07522 * 11 10 9 13 13 O 1.42106 * 106.40231 * 29.16193 * 11 10 9 14 14 C 1.76196 * 107.22168 * 275.62060 * 11 10 9 15 15 C 1.37638 * 120.12911 * 112.40416 * 14 11 10 16 16 C 1.38610 * 120.24917 * 180.25912 * 15 14 11 17 17 C 1.38664 * 120.49878 * 359.75520 * 16 15 14 18 18 C 1.37590 * 120.24743 * 359.97438 * 17 16 15 19 19 C 1.40697 * 120.12792 * 292.14500 * 14 11 10 20 20 C 1.41390 * 120.24174 * 359.97438 * 19 14 11 21 21 H 1.08007 * 120.00628 * 331.20732 * 20 19 14 22 22 C 1.39952 * 120.00129 * 151.20349 * 20 19 14 23 23 N 1.30816 * 120.00187 * 165.33664 * 22 20 19 24 24 Si 1.86800 * 119.99533 * 345.06848 * 22 20 19 25 25 H 1.48503 * 109.47243 * 95.09268 * 24 22 20 26 26 H 1.48508 * 109.46916 * 215.08835 * 24 22 20 27 27 H 1.48502 * 109.47401 * 335.08756 * 24 22 20 28 28 C 1.46926 * 118.73952 * 306.09890 * 10 9 5 29 29 H 1.09001 * 109.46657 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46926 * 300.06116 * 1 2 3 31 31 H 1.09003 * 109.47014 * 60.06152 * 1 2 3 32 32 H 1.09000 * 109.45665 * 301.35000 * 4 2 1 33 33 H 1.08994 * 109.46624 * 61.32270 * 4 2 1 34 34 H 1.08999 * 109.47288 * 304.99644 * 7 5 4 35 35 H 1.09006 * 109.47174 * 64.99364 * 7 5 4 36 36 H 0.96706 * 113.99998 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.73902 * 295.12049 * 9 5 4 38 38 H 1.09001 * 109.66443 * 174.54925 * 9 5 4 39 39 H 1.08001 * 119.87600 * 0.02562 * 15 14 11 40 40 H 1.07996 * 119.75223 * 179.73734 * 16 15 14 41 41 H 1.08001 * 119.86917 * 180.02562 * 17 16 15 42 42 H 1.08004 * 120.12689 * 180.02562 * 18 17 16 43 43 H 0.97005 * 120.00286 * 180.02562 * 23 22 20 44 44 H 1.09001 * 109.58444 * 173.64889 * 28 10 9 45 45 H 1.09005 * 109.58094 * 293.92483 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7231 1.2480 5 6 3.5716 -0.6942 1.2652 6 1 3.9161 0.3398 1.2539 7 6 4.0812 -1.3885 2.5297 8 8 5.5024 -1.2598 2.6040 9 6 4.1058 -1.4306 0.0273 10 7 3.5047 -0.8280 -1.1704 11 16 4.4581 -0.2833 -2.4099 12 8 3.6113 -0.1639 -3.5449 13 8 5.6310 -1.0856 -2.3964 14 6 4.9687 1.3514 -1.9958 15 6 6.2909 1.6123 -1.7163 16 6 6.6944 2.8963 -1.3850 17 6 5.7743 3.9325 -1.3360 18 6 4.4483 3.6958 -1.6170 19 6 4.0273 2.3962 -1.9548 20 6 2.6673 2.1412 -2.2458 21 1 2.4000 1.3395 -2.9184 22 6 1.6675 2.9277 -1.6624 23 7 0.4484 2.8929 -2.1356 24 14 2.0721 4.0213 -0.2030 25 1 2.3751 5.3939 -0.6820 26 1 0.9098 4.0646 0.7203 27 1 3.2528 3.4748 0.5128 28 6 2.0413 -0.7233 -1.2499 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5148 0.8894 31 1 -0.3633 0.5129 -0.8906 32 1 1.6590 -0.2248 2.1387 33 1 1.6982 -1.7575 1.2348 34 1 3.6282 -0.9254 3.4063 35 1 3.8132 -2.4446 2.4975 36 1 5.8951 -1.6781 3.3825 37 1 3.8351 -2.4851 0.0808 38 1 5.1903 -1.3315 -0.0189 39 1 7.0161 0.8128 -1.7517 40 1 7.7332 3.0911 -1.1631 41 1 6.0999 4.9292 -1.0771 42 1 3.7333 4.5044 -1.5787 43 1 -0.2446 3.4383 -1.7315 44 1 1.7633 -0.1575 -2.1391 45 1 1.6059 -1.7213 -1.3009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601445616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:58 Heat of formation + Delta-G solvation = -136.664521 kcal Electronic energy + Delta-G solvation = -30289.591609 eV Core-core repulsion = 26397.215725 eV Total energy + Delta-G solvation = -3892.375884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.06595 -39.54637 -38.22699 -37.43313 -36.73379 -35.64700 -34.28012 -33.26482 -32.46085 -31.81914 -27.71479 -27.13285 -26.57413 -25.28120 -23.78022 -22.94612 -21.66985 -20.94595 -19.77350 -19.51899 -18.81847 -18.13675 -18.00638 -17.22072 -17.05899 -16.22593 -15.98410 -15.86717 -15.48839 -15.34141 -15.12044 -14.86110 -14.63374 -14.54496 -14.34757 -14.02548 -13.65117 -13.48327 -13.36782 -13.19919 -13.07954 -12.97044 -12.79386 -12.72831 -12.63643 -12.43927 -12.23469 -12.22239 -11.81857 -11.69829 -11.52104 -11.38961 -11.19174 -11.10957 -10.98803 -10.78242 -9.98000 -9.71249 -9.58369 -8.96103 -6.67318 -0.23958 0.35767 0.79134 1.21187 1.32108 1.41642 2.04403 2.20991 2.50774 2.95271 3.33545 3.38758 3.59940 3.85943 3.97486 4.01632 4.12614 4.19076 4.27385 4.39037 4.43449 4.54550 4.60384 4.62366 4.66586 4.71493 4.75922 4.84645 4.91225 4.92999 4.95697 4.99913 5.07572 5.21819 5.30683 5.33795 5.37119 5.39215 5.54466 5.59395 5.67493 5.71021 5.83371 5.87909 6.11699 6.31603 6.56468 6.72784 7.04371 8.05348 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009279 B = 0.007778 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.695391 B = 3598.829370 C = 4365.754233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 H 0.057 0.943 4 C -0.095 4.095 5 C -0.105 4.105 6 H 0.050 0.950 7 C 0.088 3.912 8 O -0.596 6.596 9 C 0.132 3.868 10 N -0.990 5.990 11 S 2.711 3.289 12 O -0.999 6.999 13 O -1.006 7.006 14 C -0.787 4.787 15 C 0.003 3.997 16 C -0.255 4.255 17 C -0.043 4.043 18 C -0.262 4.262 19 C 0.148 3.852 20 C -0.472 4.472 21 H 0.109 0.891 22 C 0.081 3.919 23 N -0.792 5.792 24 Si 0.934 3.066 25 H -0.266 1.266 26 H -0.268 1.268 27 H -0.253 1.253 28 C 0.128 3.872 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.396 0.604 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.123 0.877 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.104 0.896 43 H 0.301 0.699 44 H 0.076 0.924 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.204 -6.093 12.693 14.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 H 0.076 0.924 4 C -0.133 4.133 5 C -0.126 4.126 6 H 0.069 0.931 7 C 0.010 3.990 8 O -0.404 6.404 9 C 0.008 3.992 10 N -0.827 5.827 11 S 2.809 3.191 12 O -0.990 6.990 13 O -0.997 6.997 14 C -0.880 4.880 15 C -0.017 4.017 16 C -0.275 4.275 17 C -0.061 4.061 18 C -0.282 4.282 19 C 0.143 3.857 20 C -0.499 4.499 21 H 0.126 0.874 22 C -0.141 4.141 23 N -0.414 5.414 24 Si 0.759 3.241 25 H -0.192 1.192 26 H -0.194 1.194 27 H -0.177 1.177 28 C 0.003 3.997 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.246 0.754 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.141 0.859 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.122 0.878 43 H 0.112 0.888 44 H 0.094 0.906 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.013 -6.273 11.309 12.932 hybrid contribution 0.182 1.341 0.870 1.609 sum 0.170 -4.932 12.179 13.141 Atomic orbital electron populations 1.21691 0.93698 1.02474 1.01700 1.21432 0.96465 0.99892 0.94819 0.92417 1.21487 0.92466 1.02002 0.97307 1.21610 0.96828 0.99685 0.94431 0.93116 1.22180 0.80788 1.00005 0.96061 1.86514 1.21313 1.81629 1.50980 1.21564 0.97301 0.97420 0.82949 1.57458 1.16231 1.74903 1.34128 1.00666 0.71736 0.73676 0.73052 1.93447 1.67875 1.87811 1.49819 1.93414 1.49757 1.69098 1.87401 1.30156 1.02799 1.20910 1.34182 1.20692 0.93224 0.97595 0.90149 1.20920 0.99868 0.93013 1.13680 1.21236 0.92737 0.99118 0.93030 1.21312 0.96767 0.96354 1.13757 1.17256 0.92322 0.90641 0.85491 1.20341 0.89537 1.16155 1.23820 0.87368 1.26425 0.94160 0.95042 0.98462 1.69641 1.03072 1.32559 1.36100 0.85996 0.79126 0.79303 0.79699 1.19230 1.19418 1.17671 1.21613 0.77514 1.00792 0.99734 0.90767 0.92131 0.93742 0.90522 0.89210 0.91952 0.91003 0.75409 0.89048 0.90883 0.85892 0.84755 0.84800 0.87829 0.88810 0.90588 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.20 71.98 0.66 -3.27 16 2 C -0.11 -3.45 2.75 -10.72 -0.03 -3.48 16 3 H 0.06 2.26 5.01 -2.38 -0.01 2.25 16 4 C -0.10 -2.36 4.45 30.62 0.14 -2.22 16 5 C -0.11 -2.96 2.59 -10.57 -0.03 -2.99 16 6 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 7 C 0.09 1.77 6.43 71.98 0.46 2.23 16 8 O -0.60 -13.65 13.32 -148.98 -1.98 -15.64 16 9 C 0.13 4.21 5.51 86.51 0.48 4.69 16 10 N -0.99 -37.90 3.28 -512.27 -1.68 -39.58 16 11 S 2.71 125.14 5.11 -56.49 -0.29 124.85 16 12 O -1.00 -52.09 14.31 -128.00 -1.83 -53.92 16 13 O -1.01 -47.33 15.88 -128.00 -2.03 -49.36 16 14 C -0.79 -37.93 5.97 22.73 0.14 -37.80 16 15 C 0.00 0.14 9.53 22.22 0.21 0.35 16 16 C -0.25 -10.25 10.05 22.46 0.23 -10.02 16 17 C -0.04 -1.75 10.02 22.22 0.22 -1.53 16 18 C -0.26 -12.27 7.00 22.73 0.16 -12.11 16 19 C 0.15 7.42 5.17 -21.29 -0.11 7.31 16 20 C -0.47 -24.15 6.52 23.46 0.15 -24.00 16 21 H 0.11 6.05 3.98 -2.91 -0.01 6.04 16 22 C 0.08 3.85 4.44 85.26 0.38 4.23 16 23 N -0.79 -37.19 13.93 21.83 0.30 -36.89 16 24 Si 0.93 38.77 23.37 68.60 1.60 40.38 16 25 H -0.27 -10.80 6.73 99.48 0.67 -10.13 16 26 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 27 H -0.25 -11.03 6.61 99.48 0.66 -10.38 16 28 C 0.13 4.64 4.82 86.36 0.42 5.06 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.40 4.78 9.12 -74.05 -0.68 4.10 16 37 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.07 2.56 7.14 -2.39 -0.02 2.54 16 39 H 0.12 5.05 7.32 -2.91 -0.02 5.03 16 40 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 41 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 42 H 0.10 4.72 4.31 -2.91 -0.01 4.71 16 43 H 0.30 12.62 8.30 -92.70 -0.77 11.85 16 44 H 0.08 3.33 4.85 -2.39 -0.01 3.32 16 45 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 Total: -1.00 -66.17 351.68 -2.18 -68.35 By element: Atomic # 1 Polarization: 35.09 SS G_CDS: 0.26 Total: 35.36 kcal Atomic # 6 Polarization: -77.02 SS G_CDS: 3.47 Total: -73.55 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -1.38 Total: -76.47 kcal Atomic # 8 Polarization: -113.07 SS G_CDS: -5.85 Total: -118.92 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 1.60 Total: 40.38 kcal Atomic # 16 Polarization: 125.14 SS G_CDS: -0.29 Total: 124.85 kcal Total: -66.17 -2.18 -68.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601445616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.314 kcal (2) G-P(sol) polarization free energy of solvation -66.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds