Wall clock time and date at job start Tue Mar 31 2020 23:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.50152 * 2 1 4 4 C 1.53046 * 109.49886 * 120.09246 * 2 1 3 5 5 C 1.53045 * 109.53626 * 58.58330 * 4 2 1 6 6 H 1.09004 * 109.49678 * 301.42030 * 5 4 2 7 7 C 1.52997 * 109.49910 * 181.32007 * 5 4 2 8 8 O 1.42902 * 109.46990 * 175.00495 * 7 5 4 9 9 C 1.52765 * 109.38130 * 61.23962 * 5 4 2 10 10 N 1.46918 * 109.01085 * 305.59306 * 9 5 4 11 11 S 1.65605 * 120.62852 * 233.58272 * 10 9 5 12 12 O 1.42096 * 106.40249 * 29.79973 * 11 10 9 13 13 O 1.42100 * 106.40216 * 162.72227 * 11 10 9 14 14 C 1.76203 * 107.21584 * 276.25891 * 11 10 9 15 15 C 1.37637 * 120.12802 * 116.13512 * 14 11 10 16 16 C 1.38610 * 120.24649 * 179.72395 * 15 14 11 17 17 C 1.38657 * 120.50411 * 0.54737 * 16 15 14 18 18 C 1.37603 * 120.24490 * 359.72794 * 17 16 15 19 19 C 1.40693 * 120.12713 * 296.40107 * 14 11 10 20 20 C 1.41401 * 120.24861 * 359.97438 * 19 14 11 21 21 H 1.08005 * 119.99330 * 332.47629 * 20 19 14 22 22 C 1.39939 * 120.00420 * 152.48002 * 20 19 14 23 23 N 1.30823 * 119.99934 * 162.35775 * 22 20 19 24 24 Si 1.86800 * 120.00054 * 342.36200 * 22 20 19 25 25 H 1.48501 * 109.47374 * 95.19607 * 24 22 20 26 26 H 1.48501 * 109.47070 * 215.19853 * 24 22 20 27 27 H 1.48498 * 109.46969 * 335.19657 * 24 22 20 28 28 C 1.46933 * 118.74237 * 53.30289 * 10 9 5 29 29 H 1.08997 * 109.47356 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46941 * 300.07180 * 1 2 3 31 31 H 1.09000 * 109.46466 * 60.06478 * 1 2 3 32 32 H 1.08996 * 109.46427 * 178.60348 * 4 2 1 33 33 H 1.08999 * 109.45806 * 298.58429 * 4 2 1 34 34 H 1.09003 * 109.46983 * 294.99874 * 7 5 4 35 35 H 1.08996 * 109.47430 * 55.00057 * 7 5 4 36 36 H 0.96707 * 113.99619 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.50911 * 185.70567 * 9 5 4 38 38 H 1.09009 * 109.42692 * 65.42681 * 9 5 4 39 39 H 1.08005 * 119.87317 * 359.96512 * 15 14 11 40 40 H 1.08004 * 119.74809 * 180.30039 * 16 15 14 41 41 H 1.07997 * 119.87337 * 179.70528 * 17 16 15 42 42 H 1.07997 * 120.12046 * 180.02562 * 18 17 16 43 43 H 0.97000 * 119.99982 * 179.97438 * 23 22 20 44 44 H 1.09005 * 109.58250 * 66.43503 * 28 10 9 45 45 H 1.08994 * 109.58364 * 186.71170 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7234 1.2482 5 6 1.5029 -2.1561 1.2656 6 1 0.4132 -2.1357 1.2536 7 6 1.9872 -2.8681 2.5303 8 8 1.3915 -4.1649 2.6045 9 6 2.0090 -2.9025 0.0326 10 7 1.6516 -2.1379 -1.1700 11 16 0.8190 -2.8548 -2.4091 12 8 0.0141 -3.8664 -1.8193 13 8 0.2868 -1.7996 -3.1982 14 6 2.0001 -3.6847 -3.4196 15 6 1.9618 -5.0549 -3.5438 16 6 2.8862 -5.7097 -4.3425 17 6 3.8656 -4.9956 -5.0157 18 6 3.9264 -3.6257 -4.9017 19 6 2.9895 -2.9497 -4.0981 20 6 3.0419 -1.5421 -3.9740 21 1 2.1414 -0.9849 -3.7617 22 6 4.2604 -0.8711 -4.1264 23 7 4.2737 0.4166 -4.3570 24 14 5.8681 -1.8140 -4.0007 25 1 6.3221 -2.2019 -5.3603 26 1 6.8971 -0.9550 -3.3615 27 1 5.6631 -3.0346 -3.1802 28 6 2.0413 -0.7235 -1.2497 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5150 0.8893 31 1 -0.3632 0.5128 -0.8906 32 1 3.1305 -0.7447 1.2352 33 1 1.6985 -0.1964 2.1389 34 1 3.0722 -2.9680 2.4981 35 1 1.7018 -2.2863 3.4067 36 1 1.6540 -4.6743 3.3835 37 1 1.5471 -3.8889 -0.0108 38 1 3.0926 -3.0064 0.0909 39 1 1.2061 -5.6216 -3.0199 40 1 2.8456 -6.7847 -4.4380 41 1 4.5837 -5.5167 -5.6316 42 1 4.6899 -3.0714 -5.4273 43 1 5.1183 0.8818 -4.4622 44 1 3.1276 -0.6460 -1.2981 45 1 1.6029 -0.2733 -2.1402 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601445617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:03 Heat of formation + Delta-G solvation = -114.365455 kcal Electronic energy + Delta-G solvation = -29762.088867 eV Core-core repulsion = 25870.679943 eV Total energy + Delta-G solvation = -3891.408924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.08301 -37.85804 -36.60662 -36.28878 -34.87589 -33.92394 -32.73551 -32.02408 -30.71730 -30.08630 -26.71568 -25.74423 -25.32656 -24.03750 -22.03584 -21.36944 -21.14930 -19.14396 -18.02402 -17.66496 -17.22460 -17.15616 -16.38825 -15.61202 -15.41183 -14.82526 -14.70496 -14.25978 -14.11079 -13.86950 -13.65385 -13.55280 -13.42091 -13.12435 -12.93840 -12.82775 -12.28631 -12.14535 -11.87380 -11.57984 -11.42184 -11.27062 -11.21056 -11.17267 -10.97204 -10.93472 -10.82190 -10.72218 -10.62120 -10.44774 -10.12434 -10.00527 -9.96927 -9.83893 -9.45939 -9.27589 -8.35679 -8.16737 -7.84916 -7.24464 -4.89096 1.47001 2.09936 2.53038 2.91828 3.00997 3.12273 3.73502 3.83221 4.19952 4.22631 4.70434 4.88802 4.94826 5.03869 5.13479 5.21437 5.33680 5.43141 5.54008 5.63524 5.65946 5.71325 5.80585 5.84569 5.91061 5.92415 6.07655 6.08781 6.20434 6.27063 6.30747 6.37323 6.39761 6.43241 6.56201 6.62280 6.69588 6.80658 6.94938 7.10689 7.20251 7.35383 7.44324 7.56937 7.62607 7.83488 8.10420 8.31484 8.50864 9.72561 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011388 B = 0.005986 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.072889 B = 4676.222565 C = 5399.052386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.104 4.104 3 H 0.080 0.920 4 C -0.103 4.103 5 C -0.103 4.103 6 H 0.086 0.914 7 C 0.083 3.917 8 O -0.569 6.569 9 C 0.135 3.865 10 N -0.990 5.990 11 S 2.703 3.297 12 O -0.992 6.992 13 O -0.968 6.968 14 C -0.772 4.772 15 C 0.018 3.982 16 C -0.261 4.261 17 C -0.043 4.043 18 C -0.238 4.238 19 C 0.164 3.836 20 C -0.454 4.454 21 H 0.129 0.871 22 C 0.092 3.908 23 N -0.774 5.774 24 Si 0.907 3.093 25 H -0.268 1.268 26 H -0.287 1.287 27 H -0.240 1.240 28 C 0.131 3.869 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.375 0.625 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.292 0.708 44 H 0.070 0.930 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.201 -1.153 11.657 11.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.124 4.124 3 H 0.098 0.902 4 C -0.141 4.141 5 C -0.123 4.123 6 H 0.104 0.896 7 C 0.004 3.996 8 O -0.374 6.374 9 C 0.009 3.991 10 N -0.826 5.826 11 S 2.802 3.198 12 O -0.983 6.983 13 O -0.958 6.958 14 C -0.866 4.866 15 C -0.002 4.002 16 C -0.282 4.282 17 C -0.062 4.062 18 C -0.258 4.258 19 C 0.159 3.841 20 C -0.481 4.481 21 H 0.146 0.854 22 C -0.132 4.132 23 N -0.395 5.395 24 Si 0.733 3.267 25 H -0.194 1.194 26 H -0.214 1.214 27 H -0.163 1.163 28 C 0.006 3.994 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.221 0.779 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.131 0.869 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.122 0.878 43 H 0.102 0.898 44 H 0.088 0.912 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.090 -0.586 10.933 10.949 hybrid contribution 1.977 -0.704 0.151 2.104 sum 2.067 -1.289 11.083 11.348 Atomic orbital electron populations 1.21899 0.95335 1.02075 1.01516 1.21484 0.96274 0.99302 0.95365 0.90169 1.21472 1.00583 0.94160 0.97854 1.21469 1.02334 0.94835 0.93655 0.89561 1.22204 0.96275 0.83849 0.97243 1.86571 1.72648 1.28869 1.49262 1.21151 0.99830 0.94925 0.83232 1.57539 1.75424 1.18935 1.30690 1.01070 0.73507 0.72712 0.72543 1.93452 1.66887 1.60126 1.77811 1.93494 1.77541 1.55935 1.68845 1.29960 1.26079 1.04147 1.26448 1.20399 0.94637 0.92378 0.92786 1.20483 1.01604 0.97989 1.08085 1.20818 0.95751 0.94103 0.95523 1.21171 1.04203 0.94420 1.05977 1.17058 0.88220 0.92492 0.86325 1.20404 0.97977 0.90541 1.39132 0.85409 1.26214 1.01739 0.94981 0.90312 1.69681 1.30600 1.09908 1.29269 0.86405 0.79436 0.80819 0.80070 1.19373 1.21394 1.16333 1.21573 1.00507 0.79236 0.98071 0.92521 0.93106 0.92125 0.91631 0.92106 0.93554 0.93731 0.77874 0.88958 0.92095 0.86924 0.88148 0.88357 0.87774 0.89756 0.91202 0.87783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.70 37.16 0.32 -1.85 16 2 C -0.10 -1.48 3.21 -90.50 -0.29 -1.77 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.10 -1.25 4.71 -26.68 -0.13 -1.38 16 5 C -0.10 -1.39 2.22 -90.72 -0.20 -1.60 16 6 H 0.09 1.28 6.33 -51.93 -0.33 0.95 16 7 C 0.08 0.90 6.43 37.16 0.24 1.14 16 8 O -0.57 -6.77 13.30 -35.23 -0.47 -7.24 16 9 C 0.13 2.21 5.55 -3.93 -0.02 2.19 16 10 N -0.99 -18.70 2.67 -113.77 -0.30 -19.01 16 11 S 2.70 60.49 5.10 -107.50 -0.55 59.94 16 12 O -0.99 -23.00 15.75 -57.17 -0.90 -23.90 16 13 O -0.97 -23.89 14.49 -57.17 -0.83 -24.72 16 14 C -0.77 -18.30 5.96 -38.87 -0.23 -18.53 16 15 C 0.02 0.40 9.53 -39.66 -0.38 0.02 16 16 C -0.26 -5.46 10.05 -39.29 -0.39 -5.86 16 17 C -0.04 -0.92 10.02 -39.66 -0.40 -1.32 16 18 C -0.24 -5.58 7.12 -38.87 -0.28 -5.85 16 19 C 0.16 4.05 5.17 -106.82 -0.55 3.50 16 20 C -0.45 -11.32 7.31 -37.74 -0.28 -11.59 16 21 H 0.13 3.35 3.92 -52.48 -0.21 3.14 16 22 C 0.09 2.16 5.42 -17.34 -0.09 2.07 16 23 N -0.77 -18.31 13.93 55.55 0.77 -17.54 16 24 Si 0.91 18.97 24.44 -169.99 -4.15 14.82 16 25 H -0.27 -5.51 6.68 56.52 0.38 -5.13 16 26 H -0.29 -5.71 7.11 56.52 0.40 -5.31 16 27 H -0.24 -5.19 6.76 56.52 0.38 -4.81 16 28 C 0.13 2.35 4.22 -3.71 -0.02 2.34 16 29 H 0.06 0.89 5.97 -51.93 -0.31 0.58 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.38 2.55 9.12 45.56 0.42 2.97 16 37 H 0.09 1.63 6.91 -51.93 -0.36 1.27 16 38 H 0.06 0.94 8.14 -51.92 -0.42 0.51 16 39 H 0.11 2.31 7.33 -52.48 -0.38 1.93 16 40 H 0.10 1.80 8.06 -52.48 -0.42 1.37 16 41 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.10 2.37 4.37 -52.49 -0.23 2.14 16 43 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 44 H 0.07 1.26 8.06 -51.93 -0.42 0.85 16 45 H 0.10 2.11 5.38 -51.93 -0.28 1.84 16 LS Contribution 352.79 15.07 5.32 5.32 Total: -1.00 -30.18 352.79 -9.31 -39.50 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -5.51 Total: 11.31 kcal Atomic # 6 Polarization: -35.79 SS G_CDS: -2.69 Total: -38.48 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.47 Total: -36.54 kcal Atomic # 8 Polarization: -53.66 SS G_CDS: -2.20 Total: -55.86 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.15 Total: 14.82 kcal Atomic # 16 Polarization: 60.49 SS G_CDS: -0.55 Total: 59.94 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.18 -9.31 -39.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601445617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.869 kcal (2) G-P(sol) polarization free energy of solvation -30.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds