Wall clock time and date at job start Tue Mar 31 2020 23:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.50152 * 2 1 4 4 C 1.53046 * 109.49886 * 120.09246 * 2 1 3 5 5 C 1.53045 * 109.53626 * 58.58330 * 4 2 1 6 6 H 1.09004 * 109.49678 * 301.42030 * 5 4 2 7 7 C 1.52997 * 109.49910 * 181.32007 * 5 4 2 8 8 O 1.42902 * 109.46990 * 175.00495 * 7 5 4 9 9 C 1.52765 * 109.38130 * 61.23962 * 5 4 2 10 10 N 1.46918 * 109.01085 * 305.59306 * 9 5 4 11 11 S 1.65605 * 120.62852 * 233.58272 * 10 9 5 12 12 O 1.42096 * 106.40249 * 29.79973 * 11 10 9 13 13 O 1.42100 * 106.40216 * 162.72227 * 11 10 9 14 14 C 1.76203 * 107.21584 * 276.25891 * 11 10 9 15 15 C 1.37637 * 120.12802 * 116.13512 * 14 11 10 16 16 C 1.38610 * 120.24649 * 179.72395 * 15 14 11 17 17 C 1.38657 * 120.50411 * 0.54737 * 16 15 14 18 18 C 1.37603 * 120.24490 * 359.72794 * 17 16 15 19 19 C 1.40693 * 120.12713 * 296.40107 * 14 11 10 20 20 C 1.41401 * 120.24861 * 359.97438 * 19 14 11 21 21 H 1.08005 * 119.99330 * 332.47629 * 20 19 14 22 22 C 1.39939 * 120.00420 * 152.48002 * 20 19 14 23 23 N 1.30823 * 119.99934 * 162.35775 * 22 20 19 24 24 Si 1.86800 * 120.00054 * 342.36200 * 22 20 19 25 25 H 1.48501 * 109.47374 * 95.19607 * 24 22 20 26 26 H 1.48501 * 109.47070 * 215.19853 * 24 22 20 27 27 H 1.48498 * 109.46969 * 335.19657 * 24 22 20 28 28 C 1.46933 * 118.74237 * 53.30289 * 10 9 5 29 29 H 1.08997 * 109.47356 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46941 * 300.07180 * 1 2 3 31 31 H 1.09000 * 109.46466 * 60.06478 * 1 2 3 32 32 H 1.08996 * 109.46427 * 178.60348 * 4 2 1 33 33 H 1.08999 * 109.45806 * 298.58429 * 4 2 1 34 34 H 1.09003 * 109.46983 * 294.99874 * 7 5 4 35 35 H 1.08996 * 109.47430 * 55.00057 * 7 5 4 36 36 H 0.96707 * 113.99619 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.50911 * 185.70567 * 9 5 4 38 38 H 1.09009 * 109.42692 * 65.42681 * 9 5 4 39 39 H 1.08005 * 119.87317 * 359.96512 * 15 14 11 40 40 H 1.08004 * 119.74809 * 180.30039 * 16 15 14 41 41 H 1.07997 * 119.87337 * 179.70528 * 17 16 15 42 42 H 1.07997 * 120.12046 * 180.02562 * 18 17 16 43 43 H 0.97000 * 119.99982 * 179.97438 * 23 22 20 44 44 H 1.09005 * 109.58250 * 66.43503 * 28 10 9 45 45 H 1.08994 * 109.58364 * 186.71170 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7234 1.2482 5 6 1.5029 -2.1561 1.2656 6 1 0.4132 -2.1357 1.2536 7 6 1.9872 -2.8681 2.5303 8 8 1.3915 -4.1649 2.6045 9 6 2.0090 -2.9025 0.0326 10 7 1.6516 -2.1379 -1.1700 11 16 0.8190 -2.8548 -2.4091 12 8 0.0141 -3.8664 -1.8193 13 8 0.2868 -1.7996 -3.1982 14 6 2.0001 -3.6847 -3.4196 15 6 1.9618 -5.0549 -3.5438 16 6 2.8862 -5.7097 -4.3425 17 6 3.8656 -4.9956 -5.0157 18 6 3.9264 -3.6257 -4.9017 19 6 2.9895 -2.9497 -4.0981 20 6 3.0419 -1.5421 -3.9740 21 1 2.1414 -0.9849 -3.7617 22 6 4.2604 -0.8711 -4.1264 23 7 4.2737 0.4166 -4.3570 24 14 5.8681 -1.8140 -4.0007 25 1 6.3221 -2.2019 -5.3603 26 1 6.8971 -0.9550 -3.3615 27 1 5.6631 -3.0346 -3.1802 28 6 2.0413 -0.7235 -1.2497 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5150 0.8893 31 1 -0.3632 0.5128 -0.8906 32 1 3.1305 -0.7447 1.2352 33 1 1.6985 -0.1964 2.1389 34 1 3.0722 -2.9680 2.4981 35 1 1.7018 -2.2863 3.4067 36 1 1.6540 -4.6743 3.3835 37 1 1.5471 -3.8889 -0.0108 38 1 3.0926 -3.0064 0.0909 39 1 1.2061 -5.6216 -3.0199 40 1 2.8456 -6.7847 -4.4380 41 1 4.5837 -5.5167 -5.6316 42 1 4.6899 -3.0714 -5.4273 43 1 5.1183 0.8818 -4.4622 44 1 3.1276 -0.6460 -1.2981 45 1 1.6029 -0.2733 -2.1402 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601445617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:02 Heat of formation + Delta-G solvation = -136.541818 kcal Electronic energy + Delta-G solvation = -29763.050506 eV Core-core repulsion = 25870.679943 eV Total energy + Delta-G solvation = -3892.370563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.26667 -39.60321 -38.22717 -37.44074 -36.73729 -35.69402 -34.07206 -33.16121 -32.47966 -31.82494 -27.96620 -27.21636 -26.60489 -25.38984 -23.77044 -22.96157 -22.43348 -20.47162 -19.68789 -19.31391 -18.80423 -18.16141 -18.00180 -17.14917 -17.00899 -16.20841 -15.99703 -15.84072 -15.59138 -15.35118 -15.15351 -14.97689 -14.75809 -14.52113 -14.26894 -14.11393 -14.01379 -13.63390 -13.27157 -13.20836 -13.06148 -13.01527 -12.88189 -12.70725 -12.46522 -12.44341 -12.22731 -12.11308 -12.00860 -11.72691 -11.69851 -11.36076 -11.19858 -11.09412 -11.00582 -10.78863 -10.00937 -9.70203 -9.62379 -9.01634 -6.72993 -0.25201 0.33574 0.76781 1.23176 1.35528 1.44850 2.05297 2.20559 2.46857 2.94158 3.30752 3.38474 3.59983 3.85673 3.92332 3.94443 4.11322 4.17158 4.28229 4.30355 4.43439 4.47603 4.60067 4.62019 4.66323 4.71805 4.76287 4.78375 4.89555 4.90463 4.95703 5.04834 5.09279 5.14686 5.19886 5.28654 5.30355 5.37485 5.47054 5.53990 5.54924 5.67640 5.81645 5.87961 6.07250 6.25861 6.52570 6.68150 7.04321 8.00951 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011388 B = 0.005986 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.072889 B = 4676.222565 C = 5399.052386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 H 0.099 0.901 4 C -0.096 4.096 5 C -0.102 4.102 6 H 0.070 0.930 7 C 0.086 3.914 8 O -0.596 6.596 9 C 0.128 3.872 10 N -0.984 5.984 11 S 2.710 3.290 12 O -1.007 7.007 13 O -1.001 7.001 14 C -0.791 4.791 15 C 0.000 4.000 16 C -0.253 4.253 17 C -0.041 4.041 18 C -0.262 4.262 19 C 0.146 3.854 20 C -0.477 4.477 21 H 0.103 0.897 22 C 0.067 3.933 23 N -0.801 5.801 24 Si 0.952 3.048 25 H -0.259 1.259 26 H -0.269 1.269 27 H -0.251 1.251 28 C 0.133 3.867 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.396 0.604 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.124 0.876 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.108 0.892 43 H 0.303 0.697 44 H 0.064 0.936 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.055 -2.109 13.501 14.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.121 4.121 3 H 0.117 0.883 4 C -0.133 4.133 5 C -0.123 4.123 6 H 0.088 0.912 7 C 0.008 3.992 8 O -0.405 6.405 9 C 0.003 3.997 10 N -0.822 5.822 11 S 2.808 3.192 12 O -0.997 6.997 13 O -0.991 6.991 14 C -0.885 4.885 15 C -0.020 4.020 16 C -0.273 4.273 17 C -0.059 4.059 18 C -0.281 4.281 19 C 0.141 3.859 20 C -0.504 4.504 21 H 0.121 0.879 22 C -0.155 4.155 23 N -0.424 5.424 24 Si 0.775 3.225 25 H -0.185 1.185 26 H -0.195 1.195 27 H -0.175 1.175 28 C 0.008 3.992 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.246 0.754 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.142 0.858 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.126 0.874 43 H 0.114 0.886 44 H 0.082 0.918 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.941 -1.549 12.782 13.021 hybrid contribution 1.324 -0.507 -0.439 1.485 sum 3.265 -2.056 12.343 12.932 Atomic orbital electron populations 1.21902 0.95630 1.01062 1.02204 1.21508 0.96025 1.00046 0.94551 0.88304 1.21455 1.01185 0.93031 0.97623 1.21482 1.01422 0.95852 0.93500 0.91153 1.22199 0.96920 0.83662 0.96418 1.86517 1.73261 1.29671 1.51017 1.21388 1.00438 0.94420 0.83491 1.57279 1.75199 1.19344 1.30397 1.00640 0.73665 0.72140 0.72713 1.93416 1.67691 1.60588 1.78017 1.93445 1.78632 1.56885 1.70169 1.30192 1.26051 1.05145 1.27124 1.20718 0.95664 0.92026 0.93568 1.20962 1.00250 0.99905 1.06196 1.21277 0.96137 0.93386 0.95098 1.21355 1.04516 0.95740 1.06495 1.17276 0.89109 0.92600 0.86884 1.20326 0.97973 0.90947 1.41180 0.87920 1.26715 1.03507 0.95500 0.89731 1.69681 1.31926 1.10758 1.29996 0.85710 0.76902 0.79612 0.80255 1.18510 1.19484 1.17496 1.21549 0.99913 0.78831 0.98937 0.94392 0.89955 0.93873 0.90488 0.88857 0.92072 0.90989 0.75419 0.90689 0.91012 0.85826 0.84461 0.84404 0.87418 0.88619 0.91803 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.32 8.70 71.98 0.63 -3.70 16 2 C -0.10 -2.80 3.21 -10.72 -0.03 -2.84 16 3 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 4 C -0.10 -2.06 4.71 30.62 0.14 -1.92 16 5 C -0.10 -2.61 2.22 -10.86 -0.02 -2.64 16 6 H 0.07 2.03 6.33 -2.38 -0.02 2.02 16 7 C 0.09 1.62 6.43 71.98 0.46 2.08 16 8 O -0.60 -13.04 13.30 -148.98 -1.98 -15.02 16 9 C 0.13 4.20 5.55 86.22 0.48 4.67 16 10 N -0.98 -38.49 2.67 -513.84 -1.37 -39.86 16 11 S 2.71 127.25 5.10 -56.49 -0.29 126.96 16 12 O -1.01 -48.46 15.75 -128.00 -2.02 -50.48 16 13 O -1.00 -52.94 14.49 -128.00 -1.85 -54.80 16 14 C -0.79 -38.39 5.96 22.73 0.14 -38.26 16 15 C 0.00 0.00 9.53 22.22 0.21 0.21 16 16 C -0.25 -9.95 10.05 22.46 0.23 -9.73 16 17 C -0.04 -1.62 10.02 22.22 0.22 -1.40 16 18 C -0.26 -12.05 7.12 22.73 0.16 -11.89 16 19 C 0.15 7.36 5.17 -21.29 -0.11 7.25 16 20 C -0.48 -24.80 7.31 23.46 0.17 -24.63 16 21 H 0.10 5.78 3.92 -2.91 -0.01 5.77 16 22 C 0.07 3.22 5.42 85.26 0.46 3.68 16 23 N -0.80 -38.78 13.93 21.82 0.30 -38.48 16 24 Si 0.95 38.42 24.44 68.60 1.68 40.10 16 25 H -0.26 -10.06 6.68 99.48 0.66 -9.39 16 26 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 27 H -0.25 -10.52 6.76 99.48 0.67 -9.84 16 28 C 0.13 4.94 4.22 86.36 0.36 5.31 16 29 H 0.04 1.21 5.97 -2.39 -0.01 1.20 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 36 H 0.40 4.48 9.12 -74.05 -0.68 3.80 16 37 H 0.07 2.71 6.91 -2.39 -0.02 2.69 16 38 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.12 5.04 7.33 -2.91 -0.02 5.02 16 40 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 41 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 42 H 0.11 4.79 4.37 -2.91 -0.01 4.78 16 43 H 0.30 12.93 8.30 -92.71 -0.77 12.16 16 44 H 0.06 2.40 8.06 -2.38 -0.02 2.38 16 45 H 0.07 3.11 5.38 -2.39 -0.01 3.10 16 Total: -1.00 -67.94 352.79 -1.76 -69.70 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: 0.27 Total: 35.65 kcal Atomic # 6 Polarization: -77.27 SS G_CDS: 3.50 Total: -73.78 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -1.07 Total: -78.34 kcal Atomic # 8 Polarization: -114.44 SS G_CDS: -5.85 Total: -120.29 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 1.68 Total: 40.10 kcal Atomic # 16 Polarization: 127.25 SS G_CDS: -0.29 Total: 126.96 kcal Total: -67.94 -1.76 -69.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601445617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.843 kcal (2) G-P(sol) polarization free energy of solvation -67.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds