Wall clock time and date at job start Tue Mar 31 2020 23:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47149 * 2 1 4 4 O 1.42903 * 109.47116 * 120.00005 * 2 1 3 5 5 C 1.42892 * 113.99815 * 149.99588 * 4 2 1 6 6 H 1.09003 * 110.91798 * 32.45067 * 5 4 2 7 7 C 1.55157 * 111.01098 * 268.54686 * 5 4 2 8 8 C 1.54315 * 102.94409 * 206.42415 * 7 5 4 9 9 N 1.47024 * 107.27315 * 22.19462 * 8 7 5 10 10 S 1.65597 * 125.64908 * 181.02344 * 9 8 7 11 11 O 1.42100 * 106.40203 * 342.96665 * 10 9 8 12 12 O 1.42099 * 106.40398 * 210.04989 * 10 9 8 13 13 C 1.76199 * 107.22039 * 96.50928 * 10 9 8 14 14 C 1.37636 * 120.12851 * 113.85784 * 13 10 9 15 15 C 1.38615 * 120.24802 * 179.97438 * 14 13 10 16 16 C 1.38662 * 120.50182 * 0.02643 * 15 14 13 17 17 C 1.37599 * 120.24497 * 359.97438 * 16 15 14 18 18 C 1.40702 * 120.12674 * 293.87939 * 13 10 9 19 19 C 1.41399 * 120.24318 * 359.97438 * 18 13 10 20 20 H 1.07997 * 120.00145 * 328.70591 * 19 18 13 21 21 C 1.39945 * 119.99914 * 148.70462 * 19 18 13 22 22 N 1.30820 * 120.00067 * 167.38476 * 21 19 18 23 23 Si 1.86797 * 120.00017 * 347.37432 * 21 19 18 24 24 H 1.48503 * 109.46853 * 93.10227 * 23 21 19 25 25 H 1.48498 * 109.47307 * 213.09889 * 23 21 19 26 26 H 1.48496 * 109.47562 * 333.10827 * 23 21 19 27 27 C 1.47427 * 108.70287 * 1.28222 * 9 8 7 28 28 H 1.09006 * 109.46910 * 299.99993 * 1 2 3 29 29 H 1.09002 * 109.47287 * 59.99861 * 1 2 3 30 30 H 1.09003 * 109.47439 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46919 * 239.99895 * 2 1 3 32 32 H 1.09007 * 109.47237 * 59.99638 * 3 2 1 33 33 H 1.08994 * 109.47371 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47140 * 300.00229 * 3 2 1 35 35 H 1.08994 * 110.72059 * 88.05774 * 7 5 4 36 36 H 1.09004 * 110.86813 * 324.86295 * 7 5 4 37 37 H 1.08997 * 109.88776 * 262.77255 * 8 7 5 38 38 H 1.09006 * 110.01254 * 141.67879 * 8 7 5 39 39 H 1.07997 * 119.87799 * 0.02903 * 14 13 10 40 40 H 1.07997 * 119.74732 * 180.02562 * 15 14 13 41 41 H 1.07998 * 119.87597 * 179.72553 * 16 15 14 42 42 H 1.08001 * 120.12381 * 179.97438 * 17 16 15 43 43 H 0.96994 * 120.00142 * 180.02562 * 22 21 19 44 44 H 1.08998 * 110.36518 * 94.48279 * 27 9 8 45 45 H 1.08993 * 110.36768 * 216.80792 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.2659 -1.3245 0.9886 6 1 3.8902 -0.7774 0.2821 7 6 3.0726 -2.7960 0.5361 8 6 4.3553 -3.4858 1.0462 9 7 4.8911 -2.6591 2.1375 10 16 6.2746 -2.9690 2.9933 11 8 6.5951 -4.3331 2.7575 12 8 6.0712 -2.4319 4.2931 13 6 7.5654 -2.0204 2.2594 14 6 8.1551 -0.9951 2.9631 15 6 9.1712 -0.2476 2.3883 16 6 9.6048 -0.5225 1.1002 17 6 9.0297 -1.5429 0.3782 18 6 7.9970 -2.3080 0.9514 19 6 7.3987 -3.3591 0.2189 20 1 7.0182 -4.2284 0.7346 21 6 7.2994 -3.2730 -1.1743 22 7 6.9786 -4.3308 -1.8739 23 14 7.6248 -1.6474 -2.0351 24 1 9.0500 -1.5820 -2.4471 25 1 6.7572 -1.5406 -3.2356 26 1 7.3260 -0.5273 -1.1071 27 6 3.9895 -1.5118 2.3480 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.0062 -2.8600 -0.5499 36 1 2.1888 -3.2324 1.0015 37 1 5.0855 -3.5539 0.2399 38 1 4.1199 -4.4831 1.4181 39 1 7.8256 -0.7725 3.9672 40 1 9.6285 0.5548 2.9480 41 1 10.3942 0.0692 0.6606 42 1 9.3687 -1.7550 -0.6250 43 1 6.9102 -4.2712 -2.8396 44 1 3.2699 -1.7345 3.1358 45 1 4.5631 -0.6194 2.5981 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601451310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:53 Heat of formation + Delta-G solvation = -103.254198 kcal Electronic energy + Delta-G solvation = -29137.847793 eV Core-core repulsion = 25246.920690 eV Total energy + Delta-G solvation = -3890.927104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -39.06969 -37.94311 -36.80115 -36.37720 -34.95587 -33.93526 -32.62354 -30.80112 -30.17148 -29.72289 -28.11232 -27.28166 -25.46486 -22.32811 -21.92415 -21.56549 -21.24661 -20.72310 -18.27104 -17.79597 -17.39238 -16.94205 -16.44957 -15.50755 -15.36755 -14.91793 -14.64455 -14.47576 -14.22258 -13.91307 -13.62330 -13.42459 -13.11077 -12.99544 -12.87525 -12.60711 -12.42719 -12.35767 -12.29931 -11.98164 -11.87577 -11.47058 -11.37258 -11.31345 -11.21446 -11.06391 -11.04654 -10.96246 -10.86349 -10.73371 -10.47536 -10.28163 -10.02095 -9.57002 -9.42553 -9.29764 -8.42073 -8.24610 -7.88975 -7.24889 -4.94136 1.33649 2.02143 2.46186 2.87546 2.96085 3.06314 3.49276 3.69340 3.92514 4.18937 4.63198 4.68952 4.83246 4.90970 4.97377 5.08546 5.13302 5.23632 5.32521 5.47189 5.51742 5.65100 5.68073 5.74808 5.77509 5.82309 5.85635 5.91599 6.00820 6.09435 6.11115 6.13535 6.18728 6.28915 6.34188 6.51225 6.56793 6.75963 6.88310 6.95752 7.03102 7.22160 7.34494 7.37913 7.50072 7.77609 8.09606 8.25833 8.46764 9.72171 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010161 B = 0.005519 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.961716 B = 5071.712074 C = 5805.061999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.079 3.921 3 C -0.177 4.177 4 O -0.370 6.370 5 C 0.077 3.923 6 H 0.079 0.921 7 C -0.149 4.149 8 C 0.115 3.885 9 N -1.004 6.004 10 S 2.721 3.279 11 O -0.960 6.960 12 O -0.989 6.989 13 C -0.770 4.770 14 C 0.016 3.984 15 C -0.257 4.257 16 C -0.044 4.044 17 C -0.235 4.235 18 C 0.167 3.833 19 C -0.460 4.460 20 H 0.133 0.867 21 C 0.089 3.911 22 N -0.778 5.778 23 Si 0.903 3.097 24 H -0.266 1.266 25 H -0.286 1.286 26 H -0.240 1.240 27 C 0.135 3.865 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.064 0.936 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.292 0.708 44 H 0.075 0.925 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.125 7.699 -1.551 12.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.022 3.978 3 C -0.234 4.234 4 O -0.289 6.289 5 C 0.017 3.983 6 H 0.097 0.903 7 C -0.188 4.188 8 C -0.010 4.010 9 N -0.841 5.841 10 S 2.819 3.181 11 O -0.951 6.951 12 O -0.980 6.980 13 C -0.864 4.864 14 C -0.003 4.003 15 C -0.277 4.277 16 C -0.063 4.063 17 C -0.255 4.255 18 C 0.162 3.838 19 C -0.487 4.487 20 H 0.150 0.850 21 C -0.134 4.134 22 N -0.400 5.400 23 Si 0.729 3.271 24 H -0.192 1.192 25 H -0.213 1.213 26 H -0.163 1.163 27 C 0.009 3.991 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.083 0.917 39 H 0.132 0.868 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.220 6.883 -0.833 11.536 hybrid contribution 0.862 1.183 -1.452 2.061 sum -8.358 8.066 -2.285 11.838 Atomic orbital electron populations 1.21846 0.93743 1.02631 1.02256 1.22094 0.94818 0.92404 0.88530 1.22330 1.01924 0.96837 1.02347 1.87893 1.36160 1.69525 1.35305 1.23374 0.84822 0.92566 0.97527 0.90283 1.23110 0.98578 0.95723 1.01390 1.21920 0.95491 0.93202 0.90361 1.58507 1.39445 1.34988 1.51179 1.00602 0.71860 0.73778 0.71813 1.93508 1.83179 1.32856 1.85558 1.93458 1.86070 1.81339 1.37153 1.30007 1.25867 1.20377 1.10179 1.20416 0.92440 0.90634 0.96848 1.20521 1.04815 1.05233 0.97130 1.20844 0.96409 0.94739 0.94262 1.21217 1.01642 1.02020 1.00583 1.17096 0.88231 0.89164 0.89352 1.20425 1.32060 1.03997 0.92180 0.84970 1.26204 0.91367 0.98283 0.97512 1.69654 1.31356 1.29775 1.09184 0.86454 0.78818 0.83188 0.78632 1.19225 1.21350 1.16302 1.21675 0.92510 0.88851 0.96054 0.91879 0.91508 0.91995 0.92076 0.91768 0.92234 0.91877 0.90544 0.90268 0.88075 0.91731 0.86783 0.88024 0.88246 0.87651 0.89740 0.90706 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.56 37.16 0.36 -0.98 16 2 C 0.08 0.88 3.21 -26.73 -0.09 0.79 16 3 C -0.18 -1.80 9.53 37.16 0.35 -1.44 16 4 O -0.37 -5.02 9.80 -35.23 -0.35 -5.37 16 5 C 0.08 1.12 3.28 -24.46 -0.08 1.04 16 6 H 0.08 1.17 7.78 -51.93 -0.40 0.76 16 7 C -0.15 -2.16 6.68 -24.90 -0.17 -2.33 16 8 C 0.12 2.07 6.50 -3.07 -0.02 2.05 16 9 N -1.00 -19.08 3.66 -111.29 -0.41 -19.48 16 10 S 2.72 59.98 5.30 -107.50 -0.57 59.41 16 11 O -0.96 -23.73 15.11 -57.17 -0.86 -24.59 16 12 O -0.99 -22.36 16.64 -57.17 -0.95 -23.31 16 13 C -0.77 -17.70 5.97 -38.87 -0.23 -17.93 16 14 C 0.02 0.35 9.53 -39.66 -0.38 -0.03 16 15 C -0.26 -5.16 10.05 -39.29 -0.39 -5.55 16 16 C -0.04 -0.90 10.02 -39.66 -0.40 -1.30 16 17 C -0.24 -5.35 7.00 -38.88 -0.27 -5.63 16 18 C 0.17 4.02 5.12 -106.82 -0.55 3.47 16 19 C -0.46 -11.36 6.62 -37.74 -0.25 -11.61 16 20 H 0.13 3.52 5.15 -52.49 -0.27 3.25 16 21 C 0.09 2.09 5.04 -17.34 -0.09 2.00 16 22 N -0.78 -18.31 13.93 55.55 0.77 -17.54 16 23 Si 0.90 18.57 24.41 -169.99 -4.15 14.42 16 24 H -0.27 -5.39 6.69 56.52 0.38 -5.01 16 25 H -0.29 -5.60 7.11 56.52 0.40 -5.19 16 26 H -0.24 -5.04 6.67 56.52 0.38 -4.66 16 27 C 0.14 2.21 6.79 -2.41 -0.02 2.19 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.66 7.82 -51.93 -0.41 0.25 16 32 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.06 0.66 8.00 -51.93 -0.42 0.24 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.10 2.05 5.18 -51.93 -0.27 1.78 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.11 2.23 7.32 -52.49 -0.38 1.84 16 40 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 42 H 0.11 2.33 4.47 -52.49 -0.23 2.10 16 43 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 365.79 15.07 5.51 5.51 Total: -1.00 -28.44 365.79 -9.86 -38.30 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.64 Total: 7.90 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: -2.22 Total: -35.25 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.37 Total: -37.02 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -2.16 Total: -53.27 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -4.15 Total: 14.42 kcal Atomic # 16 Polarization: 59.98 SS G_CDS: -0.57 Total: 59.41 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.44 -9.86 -38.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601451310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.950 kcal (2) G-P(sol) polarization free energy of solvation -28.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds