Wall clock time and date at job start Tue Mar 31 2020 23:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47149 * 2 1 4 4 O 1.42903 * 109.47116 * 120.00005 * 2 1 3 5 5 C 1.42892 * 113.99815 * 149.99588 * 4 2 1 6 6 H 1.09003 * 110.91798 * 32.45067 * 5 4 2 7 7 C 1.55157 * 111.01098 * 268.54686 * 5 4 2 8 8 C 1.54315 * 102.94409 * 206.42415 * 7 5 4 9 9 N 1.47024 * 107.27315 * 22.19462 * 8 7 5 10 10 S 1.65597 * 125.64908 * 181.02344 * 9 8 7 11 11 O 1.42100 * 106.40203 * 342.96665 * 10 9 8 12 12 O 1.42099 * 106.40398 * 210.04989 * 10 9 8 13 13 C 1.76199 * 107.22039 * 96.50928 * 10 9 8 14 14 C 1.37636 * 120.12851 * 113.85784 * 13 10 9 15 15 C 1.38615 * 120.24802 * 179.97438 * 14 13 10 16 16 C 1.38662 * 120.50182 * 0.02643 * 15 14 13 17 17 C 1.37599 * 120.24497 * 359.97438 * 16 15 14 18 18 C 1.40702 * 120.12674 * 293.87939 * 13 10 9 19 19 C 1.41399 * 120.24318 * 359.97438 * 18 13 10 20 20 H 1.07997 * 120.00145 * 328.70591 * 19 18 13 21 21 C 1.39945 * 119.99914 * 148.70462 * 19 18 13 22 22 N 1.30820 * 120.00067 * 167.38476 * 21 19 18 23 23 Si 1.86797 * 120.00017 * 347.37432 * 21 19 18 24 24 H 1.48503 * 109.46853 * 93.10227 * 23 21 19 25 25 H 1.48498 * 109.47307 * 213.09889 * 23 21 19 26 26 H 1.48496 * 109.47562 * 333.10827 * 23 21 19 27 27 C 1.47427 * 108.70287 * 1.28222 * 9 8 7 28 28 H 1.09006 * 109.46910 * 299.99993 * 1 2 3 29 29 H 1.09002 * 109.47287 * 59.99861 * 1 2 3 30 30 H 1.09003 * 109.47439 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46919 * 239.99895 * 2 1 3 32 32 H 1.09007 * 109.47237 * 59.99638 * 3 2 1 33 33 H 1.08994 * 109.47371 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47140 * 300.00229 * 3 2 1 35 35 H 1.08994 * 110.72059 * 88.05774 * 7 5 4 36 36 H 1.09004 * 110.86813 * 324.86295 * 7 5 4 37 37 H 1.08997 * 109.88776 * 262.77255 * 8 7 5 38 38 H 1.09006 * 110.01254 * 141.67879 * 8 7 5 39 39 H 1.07997 * 119.87799 * 0.02903 * 14 13 10 40 40 H 1.07997 * 119.74732 * 180.02562 * 15 14 13 41 41 H 1.07998 * 119.87597 * 179.72553 * 16 15 14 42 42 H 1.08001 * 120.12381 * 179.97438 * 17 16 15 43 43 H 0.96994 * 120.00142 * 180.02562 * 22 21 19 44 44 H 1.08998 * 110.36518 * 94.48279 * 27 9 8 45 45 H 1.08993 * 110.36768 * 216.80792 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.2659 -1.3245 0.9886 6 1 3.8902 -0.7774 0.2821 7 6 3.0726 -2.7960 0.5361 8 6 4.3553 -3.4858 1.0462 9 7 4.8911 -2.6591 2.1375 10 16 6.2746 -2.9690 2.9933 11 8 6.5951 -4.3331 2.7575 12 8 6.0712 -2.4319 4.2931 13 6 7.5654 -2.0204 2.2594 14 6 8.1551 -0.9951 2.9631 15 6 9.1712 -0.2476 2.3883 16 6 9.6048 -0.5225 1.1002 17 6 9.0297 -1.5429 0.3782 18 6 7.9970 -2.3080 0.9514 19 6 7.3987 -3.3591 0.2189 20 1 7.0182 -4.2284 0.7346 21 6 7.2994 -3.2730 -1.1743 22 7 6.9786 -4.3308 -1.8739 23 14 7.6248 -1.6474 -2.0351 24 1 9.0500 -1.5820 -2.4471 25 1 6.7572 -1.5406 -3.2356 26 1 7.3260 -0.5273 -1.1071 27 6 3.9895 -1.5118 2.3480 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.0062 -2.8600 -0.5499 36 1 2.1888 -3.2324 1.0015 37 1 5.0855 -3.5539 0.2399 38 1 4.1199 -4.4831 1.4181 39 1 7.8256 -0.7725 3.9672 40 1 9.6285 0.5548 2.9480 41 1 10.3942 0.0692 0.6606 42 1 9.3687 -1.7550 -0.6250 43 1 6.9102 -4.2712 -2.8396 44 1 3.2699 -1.7345 3.1358 45 1 4.5631 -0.6194 2.5981 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601451310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:52 Heat of formation + Delta-G solvation = -121.486176 kcal Electronic energy + Delta-G solvation = -29138.638391 eV Core-core repulsion = 25246.920690 eV Total energy + Delta-G solvation = -3891.717702 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.22772 -39.63175 -38.21137 -37.96928 -36.78965 -35.66814 -33.56382 -32.51739 -31.85312 -31.04496 -29.39778 -28.03850 -27.20345 -23.91685 -23.39796 -22.96526 -22.56999 -21.82379 -19.90117 -19.54722 -18.93662 -18.21645 -18.00210 -17.18521 -16.87132 -16.09866 -16.03265 -15.72739 -15.62908 -15.56415 -15.27634 -14.65578 -14.53085 -14.43487 -14.24611 -14.05810 -13.72300 -13.61220 -13.32198 -13.20470 -13.12668 -13.10460 -12.98082 -12.87804 -12.75370 -12.61021 -12.49006 -12.36278 -12.11313 -12.06548 -11.82936 -11.69021 -11.41608 -11.28701 -11.00362 -10.46936 -10.03023 -9.82514 -9.61086 -8.98526 -6.74216 -0.35894 0.31370 0.75875 1.22666 1.33772 1.43335 2.03846 2.09395 2.46998 2.68091 2.91244 3.29281 3.39991 3.58389 3.82329 4.01177 4.07425 4.16644 4.18806 4.28467 4.30376 4.34023 4.44721 4.58041 4.60961 4.66340 4.73233 4.79969 4.86219 4.87993 4.94186 4.95446 5.00122 5.02535 5.11302 5.20007 5.30625 5.32306 5.34838 5.38525 5.46277 5.59235 5.69305 5.80755 6.06828 6.27489 6.32167 6.51340 6.67228 8.04341 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010161 B = 0.005519 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.961716 B = 5071.712074 C = 5805.061999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.069 3.931 3 C -0.175 4.175 4 O -0.377 6.377 5 C 0.087 3.913 6 H 0.077 0.923 7 C -0.137 4.137 8 C 0.111 3.889 9 N -1.004 6.004 10 S 2.731 3.269 11 O -0.996 6.996 12 O -0.999 6.999 13 C -0.785 4.785 14 C 0.001 3.999 15 C -0.247 4.247 16 C -0.040 4.040 17 C -0.258 4.258 18 C 0.150 3.850 19 C -0.483 4.483 20 H 0.101 0.899 21 C 0.065 3.935 22 N -0.810 5.810 23 Si 0.948 3.052 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.247 1.247 27 C 0.126 3.874 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.129 0.871 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.108 0.892 43 H 0.302 0.698 44 H 0.084 0.916 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.488 10.464 -2.198 14.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.011 3.989 3 C -0.233 4.233 4 O -0.296 6.296 5 C 0.027 3.973 6 H 0.095 0.905 7 C -0.177 4.177 8 C -0.014 4.014 9 N -0.842 5.842 10 S 2.830 3.170 11 O -0.987 6.987 12 O -0.990 6.990 13 C -0.879 4.879 14 C -0.018 4.018 15 C -0.267 4.267 16 C -0.059 4.059 17 C -0.278 4.278 18 C 0.146 3.854 19 C -0.510 4.510 20 H 0.119 0.881 21 C -0.155 4.155 22 N -0.432 5.432 23 Si 0.771 3.229 24 H -0.185 1.185 25 H -0.196 1.196 26 H -0.170 1.170 27 C 0.001 3.999 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.147 0.853 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.585 9.645 -1.475 13.678 hybrid contribution 0.982 0.380 -1.140 1.552 sum -8.603 10.025 -2.614 13.466 Atomic orbital electron populations 1.21843 0.92053 1.02883 1.03262 1.22383 0.96142 0.92632 0.87704 1.22322 1.01101 0.96473 1.03362 1.87886 1.35259 1.69682 1.36779 1.23146 0.85358 0.92614 0.96151 0.90500 1.23071 0.97036 0.95361 1.02187 1.21949 0.96472 0.93570 0.89412 1.58226 1.38810 1.36103 1.51102 1.00046 0.72234 0.72969 0.71740 1.93460 1.84041 1.35114 1.86079 1.93429 1.86388 1.81277 1.37900 1.30176 1.26626 1.20987 1.10149 1.20754 0.92980 0.90486 0.97611 1.21015 1.03420 1.05125 0.97102 1.21307 0.96496 0.93893 0.94176 1.21383 1.01947 1.03149 1.01297 1.17281 0.88779 0.89476 0.89898 1.20261 1.33881 1.03832 0.93052 0.88146 1.26702 0.90854 1.00587 0.97392 1.69664 1.32458 1.31143 1.09985 0.85768 0.79300 0.79762 0.78078 1.18453 1.19594 1.17032 1.21919 0.92461 0.87955 0.97614 0.91952 0.89426 0.92142 0.91797 0.91761 0.93488 0.89895 0.89231 0.88755 0.90524 0.92154 0.85287 0.84243 0.84346 0.87416 0.88733 0.89749 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.56 71.98 0.69 -1.55 16 2 C 0.07 1.37 3.21 30.60 0.10 1.47 16 3 C -0.18 -3.20 9.53 71.98 0.69 -2.51 16 4 O -0.38 -9.62 9.80 -148.98 -1.46 -11.08 16 5 C 0.09 2.47 3.28 32.06 0.11 2.58 16 6 H 0.08 2.21 7.78 -2.39 -0.02 2.19 16 7 C -0.14 -3.90 6.68 31.78 0.21 -3.69 16 8 C 0.11 4.11 6.50 86.73 0.56 4.67 16 9 N -1.00 -38.96 3.66 -506.02 -1.85 -40.81 16 10 S 2.73 123.81 5.30 -56.49 -0.30 123.51 16 11 O -1.00 -51.87 15.11 -128.00 -1.93 -53.81 16 12 O -1.00 -45.58 16.64 -128.00 -2.13 -47.71 16 13 C -0.79 -36.30 5.97 22.73 0.14 -36.17 16 14 C 0.00 0.06 9.53 22.22 0.21 0.27 16 15 C -0.25 -9.09 10.05 22.46 0.23 -8.87 16 16 C -0.04 -1.53 10.02 22.22 0.22 -1.31 16 17 C -0.26 -11.45 7.00 22.73 0.16 -11.29 16 18 C 0.15 7.33 5.12 -21.29 -0.11 7.22 16 19 C -0.48 -24.77 6.62 23.46 0.16 -24.61 16 20 H 0.10 5.71 5.15 -2.91 -0.02 5.70 16 21 C 0.06 3.09 5.04 85.26 0.43 3.52 16 22 N -0.81 -39.11 13.93 21.83 0.30 -38.80 16 23 Si 0.95 37.55 24.41 68.60 1.67 39.23 16 24 H -0.26 -9.87 6.69 99.48 0.67 -9.21 16 25 H -0.27 -9.82 7.11 99.48 0.71 -9.12 16 26 H -0.25 -9.97 6.67 99.48 0.66 -9.30 16 27 C 0.13 4.06 6.79 86.93 0.59 4.65 16 28 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.25 7.82 -2.39 -0.02 1.23 16 32 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.05 0.97 8.00 -2.39 -0.02 0.95 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 37 H 0.08 3.27 5.18 -2.39 -0.01 3.26 16 38 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 39 H 0.13 4.83 7.32 -2.91 -0.02 4.81 16 40 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 41 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 42 H 0.11 4.64 4.47 -2.91 -0.01 4.63 16 43 H 0.30 12.89 8.30 -92.71 -0.77 12.13 16 44 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -62.23 365.79 -0.41 -62.65 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: 0.91 Total: 32.44 kcal Atomic # 6 Polarization: -69.98 SS G_CDS: 4.37 Total: -65.61 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -1.55 Total: -79.62 kcal Atomic # 8 Polarization: -107.07 SS G_CDS: -5.52 Total: -112.60 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 1.67 Total: 39.23 kcal Atomic # 16 Polarization: 123.81 SS G_CDS: -0.30 Total: 123.51 kcal Total: -62.23 -0.41 -62.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601451310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.841 kcal (2) G-P(sol) polarization free energy of solvation -62.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds