Wall clock time and date at job start Tue Mar 31 2020 22:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47192 * 2 1 4 4 H 1.09002 * 109.51297 * 304.90163 * 3 2 1 5 5 C 1.52875 * 109.62614 * 184.90685 * 3 2 1 6 6 N 1.47153 * 108.60728 * 187.89767 * 5 3 2 7 7 S 1.65596 * 120.98031 * 230.49807 * 6 5 3 8 8 O 1.42101 * 106.40397 * 351.59830 * 7 6 5 9 9 O 1.42103 * 106.40325 * 218.66989 * 7 6 5 10 10 C 1.76205 * 107.21563 * 105.13599 * 7 6 5 11 11 C 1.37643 * 120.12726 * 112.59035 * 10 7 6 12 12 C 1.38613 * 120.24532 * 179.97438 * 11 10 7 13 13 C 1.38651 * 120.50720 * 0.02562 * 12 11 10 14 14 C 1.37602 * 120.24298 * 359.74384 * 13 12 11 15 15 C 1.40704 * 120.12808 * 292.57114 * 10 7 6 16 16 C 1.41395 * 120.24224 * 359.97438 * 15 10 7 17 17 H 1.07998 * 119.99739 * 30.34609 * 16 15 10 18 18 C 1.39939 * 119.99776 * 210.62416 * 16 15 10 19 19 N 1.30824 * 120.00422 * 12.67023 * 18 16 15 20 20 Si 1.86808 * 120.00041 * 192.67383 * 18 16 15 21 21 H 1.48496 * 109.46831 * 4.80362 * 20 18 16 22 22 H 1.48493 * 109.47126 * 124.80356 * 20 18 16 23 23 H 1.48494 * 109.47085 * 244.80533 * 20 18 16 24 24 C 1.47148 * 118.03331 * 50.22847 * 6 5 3 25 25 H 1.09007 * 109.68444 * 69.43918 * 24 6 5 26 26 C 1.53005 * 109.67936 * 189.98959 * 24 6 5 27 27 C 1.53292 * 108.38585 * 309.71686 * 24 6 5 28 28 O 1.42952 * 109.22530 * 52.30054 * 27 24 6 29 29 H 1.08998 * 109.46987 * 299.99746 * 1 2 3 30 30 H 1.08991 * 109.47044 * 59.99966 * 1 2 3 31 31 H 1.09001 * 109.46841 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46987 * 240.00254 * 2 1 3 33 33 H 1.08999 * 109.47382 * 120.00059 * 2 1 3 34 34 H 1.09004 * 109.61790 * 68.07554 * 5 3 2 35 35 H 1.09000 * 109.52549 * 307.66623 * 5 3 2 36 36 H 1.07998 * 119.87460 * 359.97438 * 11 10 7 37 37 H 1.08001 * 119.74360 * 180.02562 * 12 11 10 38 38 H 1.08002 * 119.87980 * 179.97438 * 13 12 11 39 39 H 1.08005 * 120.12289 * 180.27946 * 14 13 12 40 40 H 0.96995 * 120.00233 * 180.02562 * 19 18 16 41 41 H 1.08994 * 109.46823 * 51.29133 * 26 24 6 42 42 H 1.09000 * 109.46615 * 171.28404 * 26 24 6 43 43 H 1.08996 * 109.47135 * 291.28381 * 26 24 6 44 44 H 1.09003 * 109.51310 * 172.23358 * 27 24 6 45 45 H 1.09004 * 109.51176 * 292.37517 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6072 1.9817 -0.8426 5 6 3.5638 1.4484 -0.1232 6 7 4.0452 2.8255 0.0696 7 16 5.0866 3.5238 -1.0121 8 8 5.4885 2.4936 -1.9045 9 8 6.0054 4.2912 -0.2465 10 6 4.1531 4.6732 -1.9672 11 6 4.3906 6.0238 -1.8485 12 6 3.6581 6.9301 -2.5991 13 6 2.6791 6.4889 -3.4763 14 6 2.4280 5.1431 -3.6146 15 6 3.1624 4.2139 -2.8545 16 6 2.9103 2.8288 -2.9854 17 1 3.0667 2.1697 -2.1443 18 6 2.4638 2.3113 -4.2065 19 7 2.5144 3.0475 -5.2868 20 14 1.7953 0.5691 -4.2941 21 1 1.7362 -0.0076 -2.9270 22 1 0.4317 0.5911 -4.8815 23 1 2.6868 -0.2610 -5.1434 24 6 3.5690 3.5659 1.2488 25 1 3.9992 3.1335 2.1522 26 6 3.9788 5.0356 1.1345 27 6 2.0407 3.4587 1.3023 28 8 1.6623 2.0825 1.2213 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8524 1.0937 -1.1127 35 1 3.9935 0.7991 0.6397 36 1 5.1505 6.3786 -1.1681 37 1 3.8515 7.9880 -2.4999 38 1 2.1142 7.2040 -4.0558 39 1 1.6680 4.8014 -4.3017 40 1 2.2045 2.6889 -6.1330 41 1 3.6711 5.4241 0.1638 42 1 3.4962 5.6098 1.9253 43 1 5.0611 5.1197 1.2331 44 1 1.6787 3.8814 2.2395 45 1 1.6079 4.0053 0.4644 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601454961.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:15 Heat of formation + Delta-G solvation = -95.971483 kcal Electronic energy + Delta-G solvation = -30452.600939 eV Core-core repulsion = 26561.989637 eV Total energy + Delta-G solvation = -3890.611302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.33200 -37.66925 -36.62674 -35.05937 -34.84763 -34.03014 -33.70709 -31.21905 -30.30025 -29.63389 -27.27815 -25.98874 -25.50447 -23.12262 -21.91880 -21.47208 -21.21334 -20.44882 -18.02258 -17.77709 -16.99724 -16.48109 -15.98652 -15.70642 -15.43228 -14.93402 -14.52540 -14.41691 -14.17710 -14.12536 -13.46439 -13.34204 -13.23296 -13.14396 -12.79614 -12.34708 -12.19757 -11.87320 -11.76699 -11.64719 -11.45680 -11.34427 -11.23427 -11.17421 -11.10681 -11.07845 -10.86960 -10.74739 -10.69390 -10.46191 -10.42786 -9.95938 -9.88574 -9.67898 -9.47693 -9.26697 -8.29368 -8.01928 -7.63624 -7.08136 -4.80530 1.41118 2.28037 2.66240 2.91965 2.95801 3.04519 3.69662 3.71988 4.01083 4.35554 4.65961 4.90344 5.04320 5.10455 5.24728 5.31743 5.37623 5.41643 5.47838 5.58417 5.73640 5.78290 5.80284 5.90259 5.97216 5.97536 6.00692 6.10534 6.17470 6.18849 6.30753 6.33455 6.40954 6.45359 6.50669 6.69229 6.77440 6.88458 6.97444 7.13431 7.26084 7.44058 7.47762 7.59108 7.74461 7.84652 8.22420 8.45662 8.58809 9.86564 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009262 B = 0.008439 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.268164 B = 3316.947736 C = 4924.202694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.071 3.929 4 H 0.083 0.917 5 C 0.090 3.910 6 N -1.000 6.000 7 S 2.700 3.300 8 O -0.963 6.963 9 O -0.992 6.992 10 C -0.774 4.774 11 C -0.004 4.004 12 C -0.247 4.247 13 C -0.077 4.077 14 C -0.155 4.155 15 C 0.189 3.811 16 C -0.458 4.458 17 H 0.096 0.904 18 C 0.084 3.916 19 N -0.775 5.775 20 Si 0.899 3.101 21 H -0.244 1.244 22 H -0.269 1.269 23 H -0.267 1.267 24 C 0.131 3.869 25 H 0.076 0.924 26 C -0.220 4.220 27 C 0.054 3.946 28 O -0.378 6.378 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.287 0.713 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.106 0.894 44 H 0.096 0.904 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.225 -2.590 8.223 9.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C 0.012 3.988 4 H 0.101 0.899 5 C -0.036 4.036 6 N -0.836 5.836 7 S 2.800 3.200 8 O -0.953 6.953 9 O -0.983 6.983 10 C -0.869 4.869 11 C -0.023 4.023 12 C -0.268 4.268 13 C -0.096 4.096 14 C -0.175 4.175 15 C 0.184 3.816 16 C -0.486 4.486 17 H 0.114 0.886 18 C -0.138 4.138 19 N -0.398 5.398 20 Si 0.722 3.278 21 H -0.168 1.168 22 H -0.194 1.194 23 H -0.191 1.191 24 C 0.025 3.975 25 H 0.094 0.906 26 C -0.277 4.277 27 C -0.025 4.025 28 O -0.297 6.297 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.128 0.872 35 H 0.086 0.914 36 H 0.127 0.873 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.125 0.875 44 H 0.114 0.886 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.423 -2.929 8.064 9.237 hybrid contribution -0.778 -0.009 -0.771 1.095 sum -4.200 -2.938 7.293 8.914 Atomic orbital electron populations 1.21687 0.95289 1.01107 1.02382 1.21569 0.96850 0.94421 1.02745 1.22591 0.93706 0.94390 0.88125 0.89882 1.22047 0.95032 0.82745 1.03745 1.58085 1.65953 1.22029 1.37538 1.01224 0.73144 0.73416 0.72255 1.93506 1.80773 1.57317 1.63712 1.93407 1.61527 1.72263 1.71059 1.29956 1.21856 1.08815 1.26293 1.20235 0.95255 0.91674 0.95178 1.20494 1.03860 0.97334 1.05105 1.20898 0.96504 0.95745 0.96410 1.21437 1.01901 0.91646 1.02493 1.16988 0.85251 0.93081 0.86254 1.20150 1.37372 0.92848 0.98260 0.88637 1.25897 0.92502 1.00565 0.94817 1.69786 1.31789 1.38137 1.00084 0.86375 0.79129 0.81374 0.80881 1.16753 1.19384 1.19148 1.21425 0.95121 0.92439 0.88524 0.90569 1.22956 1.06068 0.93927 1.04797 1.22992 0.93713 0.83355 1.02415 1.87839 1.79668 1.23637 1.38514 0.92044 0.92703 0.93092 0.90162 0.91291 0.87170 0.91371 0.87322 0.88698 0.88815 0.86147 0.90186 0.89921 0.90811 0.87520 0.88602 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.81 37.16 0.36 -1.50 16 2 C -0.12 -1.62 5.65 -26.73 -0.15 -1.77 16 3 C 0.07 1.14 2.52 -26.79 -0.07 1.08 16 4 H 0.08 1.50 6.73 -51.93 -0.35 1.15 16 5 C 0.09 1.55 4.81 -3.75 -0.02 1.53 16 6 N -1.00 -18.48 3.21 -106.27 -0.34 -18.82 16 7 S 2.70 59.43 4.46 -107.50 -0.48 58.95 16 8 O -0.96 -23.89 14.96 -57.17 -0.86 -24.75 16 9 O -0.99 -22.03 13.60 -57.17 -0.78 -22.80 16 10 C -0.77 -18.00 4.91 -38.87 -0.19 -18.19 16 11 C 0.00 -0.08 7.55 -39.66 -0.30 -0.38 16 12 C -0.25 -5.22 10.05 -39.29 -0.39 -5.61 16 13 C -0.08 -1.67 10.02 -39.66 -0.40 -2.06 16 14 C -0.15 -3.71 8.65 -38.87 -0.34 -4.05 16 15 C 0.19 4.65 5.52 -106.82 -0.59 4.06 16 16 C -0.46 -10.99 7.05 -37.74 -0.27 -11.26 16 17 H 0.10 2.13 1.98 -52.49 -0.10 2.02 16 18 C 0.08 1.95 5.20 -17.34 -0.09 1.86 16 19 N -0.77 -18.67 11.06 55.55 0.61 -18.06 16 20 Si 0.90 17.08 29.58 -169.99 -5.03 12.05 16 21 H -0.24 -4.22 5.99 56.52 0.34 -3.88 16 22 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 23 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 24 C 0.13 2.07 3.66 -67.42 -0.25 1.82 16 25 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 26 C -0.22 -3.44 7.89 37.16 0.29 -3.15 16 27 C 0.05 0.79 6.28 37.31 0.23 1.02 16 28 O -0.38 -5.93 9.92 -35.23 -0.35 -6.28 16 29 H 0.06 0.78 7.82 -51.93 -0.41 0.37 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 1.09 7.03 -51.93 -0.37 0.73 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.11 2.06 5.38 -51.93 -0.28 1.78 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.11 2.19 7.30 -52.49 -0.38 1.81 16 37 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.12 2.92 6.42 -52.48 -0.34 2.58 16 40 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 41 H 0.08 1.45 4.13 -51.93 -0.21 1.23 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.11 1.81 5.81 -51.93 -0.30 1.51 16 44 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 348.71 15.07 5.26 5.26 Total: -1.00 -28.34 348.71 -10.28 -38.62 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -6.17 Total: 12.44 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: -2.16 Total: -36.61 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.27 Total: -36.88 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -1.98 Total: -53.83 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal Atomic # 16 Polarization: 59.43 SS G_CDS: -0.48 Total: 58.95 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.34 -10.28 -38.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601454961.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.349 kcal (2) G-P(sol) polarization free energy of solvation -28.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds