Wall clock time and date at job start Tue Mar 31 2020 22:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47192 * 2 1 4 4 H 1.09002 * 109.51297 * 304.90163 * 3 2 1 5 5 C 1.52875 * 109.62614 * 184.90685 * 3 2 1 6 6 N 1.47153 * 108.60728 * 187.89767 * 5 3 2 7 7 S 1.65596 * 120.98031 * 230.49807 * 6 5 3 8 8 O 1.42101 * 106.40397 * 351.59830 * 7 6 5 9 9 O 1.42103 * 106.40325 * 218.66989 * 7 6 5 10 10 C 1.76205 * 107.21563 * 105.13599 * 7 6 5 11 11 C 1.37643 * 120.12726 * 112.59035 * 10 7 6 12 12 C 1.38613 * 120.24532 * 179.97438 * 11 10 7 13 13 C 1.38651 * 120.50720 * 0.02562 * 12 11 10 14 14 C 1.37602 * 120.24298 * 359.74384 * 13 12 11 15 15 C 1.40704 * 120.12808 * 292.57114 * 10 7 6 16 16 C 1.41395 * 120.24224 * 359.97438 * 15 10 7 17 17 H 1.07998 * 119.99739 * 30.34609 * 16 15 10 18 18 C 1.39939 * 119.99776 * 210.62416 * 16 15 10 19 19 N 1.30824 * 120.00422 * 12.67023 * 18 16 15 20 20 Si 1.86808 * 120.00041 * 192.67383 * 18 16 15 21 21 H 1.48496 * 109.46831 * 4.80362 * 20 18 16 22 22 H 1.48493 * 109.47126 * 124.80356 * 20 18 16 23 23 H 1.48494 * 109.47085 * 244.80533 * 20 18 16 24 24 C 1.47148 * 118.03331 * 50.22847 * 6 5 3 25 25 H 1.09007 * 109.68444 * 69.43918 * 24 6 5 26 26 C 1.53005 * 109.67936 * 189.98959 * 24 6 5 27 27 C 1.53292 * 108.38585 * 309.71686 * 24 6 5 28 28 O 1.42952 * 109.22530 * 52.30054 * 27 24 6 29 29 H 1.08998 * 109.46987 * 299.99746 * 1 2 3 30 30 H 1.08991 * 109.47044 * 59.99966 * 1 2 3 31 31 H 1.09001 * 109.46841 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46987 * 240.00254 * 2 1 3 33 33 H 1.08999 * 109.47382 * 120.00059 * 2 1 3 34 34 H 1.09004 * 109.61790 * 68.07554 * 5 3 2 35 35 H 1.09000 * 109.52549 * 307.66623 * 5 3 2 36 36 H 1.07998 * 119.87460 * 359.97438 * 11 10 7 37 37 H 1.08001 * 119.74360 * 180.02562 * 12 11 10 38 38 H 1.08002 * 119.87980 * 179.97438 * 13 12 11 39 39 H 1.08005 * 120.12289 * 180.27946 * 14 13 12 40 40 H 0.96995 * 120.00233 * 180.02562 * 19 18 16 41 41 H 1.08994 * 109.46823 * 51.29133 * 26 24 6 42 42 H 1.09000 * 109.46615 * 171.28404 * 26 24 6 43 43 H 1.08996 * 109.47135 * 291.28381 * 26 24 6 44 44 H 1.09003 * 109.51310 * 172.23358 * 27 24 6 45 45 H 1.09004 * 109.51176 * 292.37517 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6072 1.9817 -0.8426 5 6 3.5638 1.4484 -0.1232 6 7 4.0452 2.8255 0.0696 7 16 5.0866 3.5238 -1.0121 8 8 5.4885 2.4936 -1.9045 9 8 6.0054 4.2912 -0.2465 10 6 4.1531 4.6732 -1.9672 11 6 4.3906 6.0238 -1.8485 12 6 3.6581 6.9301 -2.5991 13 6 2.6791 6.4889 -3.4763 14 6 2.4280 5.1431 -3.6146 15 6 3.1624 4.2139 -2.8545 16 6 2.9103 2.8288 -2.9854 17 1 3.0667 2.1697 -2.1443 18 6 2.4638 2.3113 -4.2065 19 7 2.5144 3.0475 -5.2868 20 14 1.7953 0.5691 -4.2941 21 1 1.7362 -0.0076 -2.9270 22 1 0.4317 0.5911 -4.8815 23 1 2.6868 -0.2610 -5.1434 24 6 3.5690 3.5659 1.2488 25 1 3.9992 3.1335 2.1522 26 6 3.9788 5.0356 1.1345 27 6 2.0407 3.4587 1.3023 28 8 1.6623 2.0825 1.2213 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8524 1.0937 -1.1127 35 1 3.9935 0.7991 0.6397 36 1 5.1505 6.3786 -1.1681 37 1 3.8515 7.9880 -2.4999 38 1 2.1142 7.2040 -4.0558 39 1 1.6680 4.8014 -4.3017 40 1 2.2045 2.6889 -6.1330 41 1 3.6711 5.4241 0.1638 42 1 3.4962 5.6098 1.9253 43 1 5.0611 5.1197 1.2331 44 1 1.6787 3.8814 2.2395 45 1 1.6079 4.0053 0.4644 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601454961.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:14 Heat of formation + Delta-G solvation = -113.282053 kcal Electronic energy + Delta-G solvation = -30453.351581 eV Core-core repulsion = 26561.989637 eV Total energy + Delta-G solvation = -3891.361944 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.60840 -39.38897 -38.35639 -36.71264 -36.31722 -35.69758 -34.97284 -32.47465 -32.04023 -31.34501 -28.54933 -27.41834 -27.05254 -24.33751 -23.56123 -22.97346 -22.76728 -21.73215 -19.67324 -19.50301 -18.55373 -17.82748 -17.54332 -17.31806 -16.92649 -16.30156 -16.07246 -15.80128 -15.61123 -15.49779 -15.09786 -14.92927 -14.63292 -14.46533 -14.24427 -13.81262 -13.66298 -13.41370 -13.10593 -13.03446 -12.96117 -12.91935 -12.85290 -12.81378 -12.59015 -12.54171 -12.27915 -12.16054 -11.95879 -11.83088 -11.77182 -11.55519 -11.24500 -11.18778 -11.11854 -10.87851 -9.80025 -9.61722 -9.40326 -8.80107 -6.59499 -0.26039 0.52242 0.95815 1.34360 1.46999 1.49441 2.13721 2.15290 2.62897 2.82621 2.95468 3.44062 3.57965 3.71143 3.86179 4.01514 4.13863 4.16514 4.25591 4.31872 4.38611 4.48194 4.52569 4.62684 4.63805 4.66596 4.70535 4.81401 4.84516 4.94355 5.01251 5.10345 5.13814 5.14058 5.22120 5.27481 5.28923 5.46900 5.48923 5.52357 5.65624 5.74354 5.84141 5.99354 6.09943 6.25065 6.47446 6.68946 6.83032 8.17508 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009262 B = 0.008439 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.268164 B = 3316.947736 C = 4924.202694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C 0.074 3.926 4 H 0.058 0.942 5 C 0.083 3.917 6 N -0.998 5.998 7 S 2.711 3.289 8 O -0.998 6.998 9 O -0.998 6.998 10 C -0.788 4.788 11 C -0.010 4.010 12 C -0.249 4.249 13 C -0.076 4.076 14 C -0.183 4.183 15 C 0.164 3.836 16 C -0.482 4.482 17 H 0.107 0.893 18 C 0.042 3.958 19 N -0.811 5.811 20 Si 0.949 3.051 21 H -0.220 1.220 22 H -0.258 1.258 23 H -0.271 1.271 24 C 0.125 3.875 25 H 0.099 0.901 26 C -0.219 4.219 27 C 0.054 3.946 28 O -0.375 6.375 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.293 0.707 41 H 0.061 0.939 42 H 0.110 0.890 43 H 0.092 0.908 44 H 0.133 0.867 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.060 -3.057 10.353 11.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C 0.015 3.985 4 H 0.076 0.924 5 C -0.042 4.042 6 N -0.837 5.837 7 S 2.811 3.189 8 O -0.989 6.989 9 O -0.989 6.989 10 C -0.883 4.883 11 C -0.030 4.030 12 C -0.269 4.269 13 C -0.094 4.094 14 C -0.203 4.203 15 C 0.160 3.840 16 C -0.510 4.510 17 H 0.125 0.875 18 C -0.176 4.176 19 N -0.435 5.435 20 Si 0.767 3.233 21 H -0.142 1.142 22 H -0.183 1.183 23 H -0.196 1.196 24 C 0.020 3.980 25 H 0.117 0.883 26 C -0.277 4.277 27 C -0.024 4.024 28 O -0.294 6.294 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.126 0.874 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.128 0.872 43 H 0.111 0.889 44 H 0.151 0.849 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.261 -3.370 10.197 11.554 hybrid contribution -0.474 0.262 -1.359 1.463 sum -4.735 -3.108 8.838 10.497 Atomic orbital electron populations 1.21679 0.94435 1.02365 1.01805 1.21621 0.97599 0.92700 1.03680 1.22536 0.92676 0.95730 0.87593 0.92436 1.22231 0.96087 0.82300 1.03600 1.57851 1.65676 1.22626 1.37526 1.00696 0.73314 0.72773 0.72118 1.93453 1.81773 1.58365 1.65288 1.93400 1.62242 1.72387 1.70871 1.30194 1.21550 1.09878 1.26638 1.20514 0.95613 0.91432 0.95438 1.20874 1.02997 0.98918 1.04077 1.21227 0.96539 0.95400 0.96282 1.21475 1.02582 0.92840 1.03433 1.17307 0.85924 0.93828 0.86983 1.20500 1.38178 0.93150 0.99135 0.87525 1.26752 0.92288 1.04294 0.94256 1.69839 1.32921 1.39979 1.00734 0.85651 0.78700 0.76816 0.82086 1.14220 1.18260 1.19618 1.21742 0.95942 0.92340 0.87955 0.88307 1.22929 1.05418 0.94381 1.04982 1.23114 0.92837 0.82913 1.03530 1.87845 1.79571 1.24016 1.37963 0.92107 0.93824 0.90921 0.90115 0.89445 0.89073 0.88781 0.85895 0.85504 0.86174 0.87425 0.89642 0.92007 0.87161 0.88903 0.84936 0.94025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.81 71.98 0.71 -2.63 16 2 C -0.12 -2.97 5.65 30.60 0.17 -2.80 16 3 C 0.07 2.29 2.52 30.55 0.08 2.37 16 4 H 0.06 2.09 6.73 -2.39 -0.02 2.08 16 5 C 0.08 2.78 4.81 86.21 0.41 3.19 16 6 N -1.00 -36.17 3.21 -490.11 -1.57 -37.75 16 7 S 2.71 120.41 4.46 -56.49 -0.25 120.16 16 8 O -1.00 -50.83 14.96 -128.00 -1.91 -52.75 16 9 O -1.00 -44.17 13.60 -128.00 -1.74 -45.91 16 10 C -0.79 -37.26 4.91 22.73 0.11 -37.15 16 11 C -0.01 -0.45 7.55 22.22 0.17 -0.28 16 12 C -0.25 -10.21 10.05 22.46 0.23 -9.98 16 13 C -0.08 -3.28 10.02 22.22 0.22 -3.06 16 14 C -0.18 -9.05 8.65 22.73 0.20 -8.85 16 15 C 0.16 8.32 5.52 -21.29 -0.12 8.20 16 16 C -0.48 -23.84 7.05 23.46 0.17 -23.68 16 17 H 0.11 4.87 1.98 -2.91 -0.01 4.87 16 18 C 0.04 2.00 5.20 85.26 0.44 2.45 16 19 N -0.81 -40.56 11.06 21.82 0.24 -40.32 16 20 Si 0.95 35.11 29.58 68.60 2.03 37.14 16 21 H -0.22 -7.16 5.99 99.48 0.60 -6.56 16 22 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16 23 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 24 C 0.13 3.69 3.66 44.97 0.16 3.86 16 25 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 26 C -0.22 -6.46 7.89 71.98 0.57 -5.90 16 27 C 0.05 1.47 6.28 72.08 0.45 1.92 16 28 O -0.38 -10.91 9.92 -148.98 -1.48 -12.39 16 29 H 0.06 1.39 7.82 -2.39 -0.02 1.37 16 30 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 2.01 7.03 -2.39 -0.02 2.00 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.09 3.42 5.38 -2.39 -0.01 3.41 16 35 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.12 4.87 7.30 -2.91 -0.02 4.85 16 37 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 38 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 39 H 0.11 5.47 6.42 -2.91 -0.02 5.45 16 40 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 41 H 0.06 2.11 4.13 -2.39 -0.01 2.10 16 42 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.09 3.02 5.81 -2.39 -0.01 3.00 16 44 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 45 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -62.83 348.71 0.19 -62.65 By element: Atomic # 1 Polarization: 40.59 SS G_CDS: 0.90 Total: 41.50 kcal Atomic # 6 Polarization: -76.30 SS G_CDS: 3.97 Total: -72.33 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -1.33 Total: -78.07 kcal Atomic # 8 Polarization: -105.92 SS G_CDS: -5.13 Total: -111.05 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 2.03 Total: 37.14 kcal Atomic # 16 Polarization: 120.41 SS G_CDS: -0.25 Total: 120.16 kcal Total: -62.83 0.19 -62.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601454961.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.637 kcal (2) G-P(sol) polarization free energy of solvation -62.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds