Wall clock time and date at job start Tue Mar 31 2020 22:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46903 * 2 1 4 4 H 1.09005 * 109.55225 * 54.86873 * 3 2 1 5 5 C 1.53294 * 109.51255 * 174.99558 * 3 2 1 6 6 N 1.47150 * 108.41699 * 172.24499 * 5 3 2 7 7 S 1.65595 * 120.98249 * 129.42788 * 6 5 3 8 8 O 1.42101 * 106.40084 * 209.73922 * 7 6 5 9 9 O 1.42096 * 106.40288 * 342.65531 * 7 6 5 10 10 C 1.76195 * 107.22009 * 96.20114 * 7 6 5 11 11 C 1.37639 * 120.12974 * 116.11367 * 10 7 6 12 12 C 1.38617 * 120.24547 * 179.72257 * 11 10 7 13 13 C 1.38657 * 120.50202 * 0.55349 * 12 11 10 14 14 C 1.37593 * 120.24735 * 359.72532 * 13 12 11 15 15 C 1.40697 * 120.12670 * 296.38795 * 10 7 6 16 16 C 1.41393 * 120.24460 * 359.97438 * 15 10 7 17 17 H 1.08008 * 119.99739 * 332.55955 * 16 15 10 18 18 C 1.39946 * 120.00307 * 152.55797 * 16 15 10 19 19 N 1.30822 * 120.00050 * 344.57319 * 18 16 15 20 20 Si 1.86804 * 119.99975 * 164.56739 * 18 16 15 21 21 H 1.48501 * 109.46931 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46821 * 120.00228 * 20 18 16 23 23 H 1.48498 * 109.47001 * 240.00346 * 20 18 16 24 24 C 1.47158 * 118.03314 * 309.44884 * 6 5 3 25 25 H 1.09003 * 109.67886 * 170.29078 * 24 6 5 26 26 C 1.53001 * 109.68109 * 290.80868 * 24 6 5 27 27 C 1.53292 * 108.38536 * 50.53542 * 24 6 5 28 28 O 1.42959 * 109.22388 * 307.69418 * 27 24 6 29 29 H 1.08991 * 109.47187 * 299.99852 * 1 2 3 30 30 H 1.09001 * 109.46888 * 60.00366 * 1 2 3 31 31 H 1.08998 * 109.46613 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47187 * 240.00148 * 2 1 3 33 33 H 1.09001 * 109.46888 * 119.99634 * 2 1 3 34 34 H 1.09004 * 109.68045 * 52.50657 * 5 3 2 35 35 H 1.09000 * 109.68310 * 291.98796 * 5 3 2 36 36 H 1.08002 * 119.87754 * 359.97438 * 11 10 7 37 37 H 1.07998 * 119.74698 * 180.25695 * 12 11 10 38 38 H 1.07998 * 119.86993 * 179.74686 * 13 12 11 39 39 H 1.08009 * 120.12621 * 180.02562 * 14 13 12 40 40 H 0.96993 * 119.99726 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.47043 * 60.00465 * 26 24 6 42 42 H 1.09003 * 109.46476 * 180.02562 * 26 24 6 43 43 H 1.08997 * 109.47008 * 299.99851 * 26 24 6 44 44 H 1.09000 * 109.51307 * 67.62379 * 27 24 6 45 45 H 1.09000 * 109.51090 * 187.72122 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6043 1.9835 0.8401 5 6 3.5678 1.4455 0.1260 6 7 4.0472 2.8237 -0.0637 7 16 5.0849 3.5223 1.0213 8 8 4.8138 4.9170 0.9950 9 8 5.0148 2.7392 2.2049 10 6 6.7163 3.3206 0.3870 11 6 7.4634 4.4229 0.0388 12 6 8.7492 4.2672 -0.4550 13 6 9.2934 3.0019 -0.6148 14 6 8.5626 1.8856 -0.2786 15 6 7.2582 2.0318 0.2291 16 6 6.4982 0.8919 0.5785 17 1 5.7357 0.9639 1.3401 18 6 6.7338 -0.3297 -0.0624 19 7 7.4245 -0.3632 -1.1729 20 14 6.0622 -1.9125 0.6679 21 1 5.3209 -1.6055 1.9176 22 1 5.1446 -2.5566 -0.3059 23 1 7.1867 -2.8333 0.9724 24 6 3.5768 3.5630 -1.2460 25 1 3.8702 4.6097 -1.1651 26 6 4.1853 2.9535 -2.5106 27 6 2.0487 3.4576 -1.3057 28 8 1.6682 2.0820 -1.2244 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 4.0003 0.7981 -0.6368 35 1 3.8552 1.0898 1.1155 36 1 7.0478 5.4129 0.1546 37 1 9.3298 5.1379 -0.7218 38 1 10.2947 2.8923 -1.0043 39 1 8.9886 0.9010 -0.4035 40 1 7.5881 -1.2099 -1.6169 41 1 3.8822 1.9097 -2.5929 42 1 3.8350 3.5039 -3.3838 43 1 5.2722 3.0131 -2.4559 44 1 1.6130 4.0059 -0.4705 45 1 1.6911 3.8801 -2.2447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601454962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:19 Heat of formation + Delta-G solvation = -109.056287 kcal Electronic energy + Delta-G solvation = -29987.251018 eV Core-core repulsion = 26096.072317 eV Total energy + Delta-G solvation = -3891.178701 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.35854 -37.62338 -36.44957 -35.00018 -34.93507 -34.01759 -33.74011 -30.88905 -30.25879 -29.58206 -27.53219 -25.90940 -25.56142 -23.60003 -21.82987 -21.35243 -21.18656 -19.97985 -18.08727 -17.65281 -17.31996 -16.43466 -16.10740 -15.48717 -15.29961 -14.95653 -14.76926 -14.42391 -14.23208 -13.63175 -13.52688 -13.32450 -13.25378 -12.95785 -12.80383 -12.52319 -11.98717 -11.92833 -11.81214 -11.72708 -11.47685 -11.29966 -11.25769 -11.20939 -11.16329 -11.05808 -10.89770 -10.83449 -10.75228 -10.59885 -10.55514 -10.03735 -9.90524 -9.69764 -9.49152 -9.20733 -8.27965 -8.01275 -7.65381 -7.12568 -4.81486 1.42491 2.31108 2.66754 2.92264 2.99524 3.04743 3.70352 3.72942 3.94538 4.32616 4.68129 4.86264 5.05541 5.14452 5.20933 5.26639 5.33519 5.41202 5.44667 5.57095 5.68347 5.76485 5.80245 5.89602 5.93929 6.00968 6.03054 6.05952 6.19754 6.20203 6.32035 6.35294 6.38037 6.49894 6.61225 6.73731 6.81808 6.90847 7.01606 7.18111 7.30179 7.41327 7.48404 7.64132 7.78082 7.89729 8.29470 8.46005 8.62131 9.81080 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010431 B = 0.007026 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.705382 B = 3984.350973 C = 5499.986469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.077 3.923 4 H 0.059 0.941 5 C 0.098 3.902 6 N -0.989 5.989 7 S 2.702 3.298 8 O -0.996 6.996 9 O -0.974 6.974 10 C -0.776 4.776 11 C -0.002 4.002 12 C -0.250 4.250 13 C -0.076 4.076 14 C -0.159 4.159 15 C 0.193 3.807 16 C -0.471 4.471 17 H 0.111 0.889 18 C 0.084 3.916 19 N -0.771 5.771 20 Si 0.897 3.103 21 H -0.248 1.248 22 H -0.266 1.266 23 H -0.267 1.267 24 C 0.118 3.882 25 H 0.100 0.900 26 C -0.155 4.155 27 C 0.060 3.940 28 O -0.373 6.373 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.287 0.713 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.051 0.949 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.482 -0.298 -2.245 8.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C 0.018 3.982 4 H 0.077 0.923 5 C -0.027 4.027 6 N -0.824 5.824 7 S 2.802 3.198 8 O -0.986 6.986 9 O -0.964 6.964 10 C -0.872 4.872 11 C -0.022 4.022 12 C -0.270 4.270 13 C -0.095 4.095 14 C -0.179 4.179 15 C 0.188 3.812 16 C -0.499 4.499 17 H 0.128 0.872 18 C -0.138 4.138 19 N -0.394 5.394 20 Si 0.719 3.281 21 H -0.171 1.171 22 H -0.191 1.191 23 H -0.192 1.192 24 C 0.011 3.989 25 H 0.118 0.882 26 C -0.214 4.214 27 C -0.018 4.018 28 O -0.292 6.292 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.139 0.861 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.783 -0.140 -1.773 8.961 hybrid contribution 0.818 -0.802 -0.261 1.175 sum -7.965 -0.941 -2.034 8.274 Atomic orbital electron populations 1.21691 0.95342 1.01222 1.02088 1.21528 0.96485 0.94350 1.03228 1.22590 0.94505 0.94009 0.87110 0.92327 1.22188 0.92976 0.83177 1.04377 1.57763 1.62378 1.23272 1.39034 1.01023 0.73873 0.71768 0.73092 1.93430 1.85745 1.32228 1.87246 1.93466 1.87403 1.70864 1.44703 1.29788 1.22292 1.00242 1.34837 1.20223 0.93791 0.95780 0.92400 1.20477 0.97325 0.96112 1.13097 1.20889 0.97772 0.93399 0.97451 1.21462 0.94602 0.97541 1.04255 1.16973 0.90788 0.89373 0.84033 1.20450 1.18030 0.92990 1.18386 0.87167 1.25959 0.93340 1.01189 0.93324 1.69809 1.28324 1.29139 1.12092 0.86389 0.80181 0.80385 0.81105 1.17130 1.19108 1.19222 1.21538 0.94725 0.96542 0.86116 0.88163 1.22017 1.01987 1.01866 0.95499 1.22871 0.93573 0.83337 1.02061 1.87887 1.79583 1.23638 1.38073 0.93050 0.92048 0.92970 0.90783 0.90299 0.89963 0.87897 0.87586 0.88763 0.88885 0.86073 0.90217 0.91628 0.92537 0.91450 0.93035 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.81 37.16 0.36 -1.24 16 2 C -0.12 -1.51 5.65 -26.73 -0.15 -1.66 16 3 C 0.08 1.15 2.78 -26.58 -0.07 1.08 16 4 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 5 C 0.10 1.74 3.89 -3.54 -0.01 1.73 16 6 N -0.99 -18.55 2.97 -106.03 -0.31 -18.86 16 7 S 2.70 59.32 5.12 -107.50 -0.55 58.77 16 8 O -1.00 -22.50 15.77 -57.17 -0.90 -23.40 16 9 O -0.97 -23.26 14.49 -57.17 -0.83 -24.09 16 10 C -0.78 -18.39 5.96 -38.87 -0.23 -18.62 16 11 C 0.00 -0.05 9.53 -39.66 -0.38 -0.42 16 12 C -0.25 -5.44 10.05 -39.29 -0.39 -5.83 16 13 C -0.08 -1.70 10.02 -39.66 -0.40 -2.09 16 14 C -0.16 -3.86 8.67 -38.88 -0.34 -4.20 16 15 C 0.19 4.79 5.55 -106.83 -0.59 4.20 16 16 C -0.47 -11.26 6.69 -37.74 -0.25 -11.51 16 17 H 0.11 2.64 3.82 -52.48 -0.20 2.44 16 18 C 0.08 1.87 5.17 -17.34 -0.09 1.78 16 19 N -0.77 -17.57 11.02 55.55 0.61 -16.96 16 20 Si 0.90 16.85 29.59 -169.99 -5.03 11.82 16 21 H -0.25 -4.66 7.11 56.52 0.40 -4.26 16 22 H -0.27 -4.78 7.11 56.52 0.40 -4.37 16 23 H -0.27 -5.01 7.11 56.52 0.40 -4.60 16 24 C 0.12 1.90 3.28 -67.42 -0.22 1.68 16 25 H 0.10 1.60 7.10 -51.93 -0.37 1.23 16 26 C -0.15 -2.48 9.24 37.16 0.34 -2.13 16 27 C 0.06 0.83 6.36 37.31 0.24 1.06 16 28 O -0.37 -5.56 9.57 -35.23 -0.34 -5.89 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.70 7.84 -51.93 -0.41 0.29 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.52 7.47 -51.93 -0.39 1.13 16 35 H 0.10 1.91 5.59 -51.93 -0.29 1.62 16 36 H 0.11 2.23 7.33 -52.49 -0.38 1.84 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.12 2.97 6.30 -52.48 -0.33 2.64 16 40 H 0.29 5.92 8.30 -40.82 -0.34 5.58 16 41 H 0.06 1.10 7.23 -51.93 -0.38 0.72 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 362.84 15.07 5.47 5.47 Total: -1.00 -27.95 362.84 -10.60 -38.55 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.53 Total: 10.78 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: -2.19 Total: -36.17 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.30 Total: -35.83 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -2.07 Total: -53.38 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.82 kcal Atomic # 16 Polarization: 59.32 SS G_CDS: -0.55 Total: 58.77 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -27.95 -10.60 -38.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601454962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.509 kcal (2) G-P(sol) polarization free energy of solvation -27.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds