Wall clock time and date at job start Tue Mar 31 2020 22:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46936 * 2 1 4 4 H 1.08991 * 109.51419 * 55.09838 * 3 2 1 5 5 C 1.53709 * 109.48535 * 175.36620 * 3 2 1 6 6 N 1.47145 * 108.16309 * 172.39756 * 5 3 2 7 7 S 1.65601 * 120.98432 * 129.42641 * 6 5 3 8 8 O 1.42101 * 106.40231 * 345.78587 * 7 6 5 9 9 O 1.42094 * 106.40563 * 212.86491 * 7 6 5 10 10 C 1.76204 * 107.21860 * 99.32166 * 7 6 5 11 11 C 1.37635 * 120.12536 * 115.38233 * 10 7 6 12 12 C 1.38615 * 120.24859 * 180.02562 * 11 10 7 13 13 C 1.38660 * 120.49639 * 0.02562 * 12 11 10 14 14 C 1.37592 * 120.25209 * 0.02562 * 13 12 11 15 15 C 1.40697 * 120.12918 * 295.63831 * 10 7 6 16 16 C 1.41402 * 120.24466 * 0.02562 * 15 10 7 17 17 H 1.08006 * 119.99778 * 330.48218 * 16 15 10 18 18 C 1.39937 * 120.00118 * 150.47794 * 16 15 10 19 19 N 1.30821 * 120.00172 * 349.56935 * 18 16 15 20 20 Si 1.86798 * 119.99950 * 169.56941 * 18 16 15 21 21 H 1.48499 * 109.47396 * 90.00322 * 20 18 16 22 22 H 1.48505 * 109.47140 * 209.99836 * 20 18 16 23 23 H 1.48496 * 109.47209 * 329.99818 * 20 18 16 24 24 C 1.47152 * 118.03863 * 309.15629 * 6 5 3 25 25 H 1.09002 * 109.67512 * 291.02706 * 24 6 5 26 26 C 1.52995 * 109.68765 * 170.51133 * 24 6 5 27 27 C 1.53294 * 108.38372 * 50.78261 * 24 6 5 28 28 O 1.42965 * 109.22441 * 307.70211 * 27 24 6 29 29 H 1.08998 * 109.47446 * 300.00075 * 1 2 3 30 30 H 1.08997 * 109.47134 * 60.00411 * 1 2 3 31 31 H 1.09008 * 109.47040 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47446 * 239.99925 * 2 1 3 33 33 H 1.08997 * 109.47134 * 119.99589 * 2 1 3 34 34 H 1.09000 * 109.84280 * 52.71167 * 5 3 2 35 35 H 1.09010 * 109.74258 * 292.02028 * 5 3 2 36 36 H 1.07999 * 119.87951 * 0.02562 * 11 10 7 37 37 H 1.08001 * 119.75548 * 180.02562 * 12 11 10 38 38 H 1.08003 * 119.87020 * 180.02562 * 13 12 11 39 39 H 1.08005 * 120.12609 * 179.97438 * 14 13 12 40 40 H 0.96999 * 120.00426 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.46879 * 51.56690 * 26 24 6 42 42 H 1.08999 * 109.47563 * 171.57518 * 26 24 6 43 43 H 1.09005 * 109.46568 * 291.57322 * 26 24 6 44 44 H 1.08999 * 109.51036 * 67.62547 * 27 24 6 45 45 H 1.09000 * 109.51222 * 187.73148 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6071 1.9817 0.8425 5 6 3.5726 1.4446 0.1171 6 7 4.0451 2.8255 -0.0697 7 16 5.0873 3.5235 1.0114 8 8 5.0842 2.6936 2.1649 9 8 4.7612 4.9061 1.0479 10 6 6.7053 3.4119 0.3226 11 6 7.3917 4.5554 -0.0175 12 6 8.6644 4.4706 -0.5600 13 6 9.2603 3.2358 -0.7668 14 6 8.5924 2.0795 -0.4352 15 6 7.2985 2.1534 0.1132 16 6 6.6005 0.9716 0.4533 17 1 5.8836 0.9814 1.2611 18 6 6.8385 -0.2105 -0.2567 19 7 7.5458 -0.1816 -1.3569 20 14 6.1465 -1.8298 0.3664 21 1 4.7964 -2.0468 -0.2129 22 1 7.0439 -2.9409 -0.0403 23 1 6.0489 -1.7891 1.8476 24 6 3.5689 3.5660 -1.2488 25 1 3.9996 3.1339 -2.1521 26 6 3.9787 5.0356 -1.1347 27 6 2.0406 3.4588 -1.3023 28 8 1.6622 2.0825 -1.2214 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.0032 0.8022 -0.6511 35 1 3.8670 1.0861 1.1035 36 1 6.9369 5.5225 0.1389 37 1 9.1959 5.3730 -0.8236 38 1 10.2526 3.1815 -1.1898 39 1 9.0583 1.1187 -0.5975 40 1 7.7111 -1.0010 -1.8489 41 1 5.0470 5.0999 -0.9279 42 1 3.7583 5.5481 -2.0711 43 1 3.4227 5.5058 -0.3235 44 1 1.6078 4.0053 -0.4644 45 1 1.6785 3.8821 -2.2392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601454963.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:23 Heat of formation + Delta-G solvation = -97.225025 kcal Electronic energy + Delta-G solvation = -29964.305861 eV Core-core repulsion = 26073.640202 eV Total energy + Delta-G solvation = -3890.665659 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.28817 -37.63126 -36.73787 -35.13546 -34.84713 -33.97867 -33.74785 -31.11002 -30.26343 -29.59371 -27.25525 -25.99448 -25.54534 -23.09704 -21.83543 -21.46954 -21.19681 -20.59162 -18.09450 -17.71469 -16.70954 -16.59370 -16.06297 -15.80513 -15.40946 -14.92040 -14.53494 -14.38715 -14.22147 -14.04999 -13.54745 -13.33009 -13.22759 -13.12245 -12.83543 -12.56157 -12.06287 -11.99455 -11.79435 -11.67090 -11.44945 -11.30223 -11.26110 -11.22189 -11.07163 -10.97318 -10.91864 -10.89402 -10.60679 -10.50985 -10.36722 -10.05849 -9.91762 -9.59886 -9.48998 -9.20206 -8.27780 -8.00835 -7.62476 -7.07507 -4.82096 1.43365 2.30677 2.68009 2.92475 2.98109 3.05848 3.71293 3.73305 3.93216 4.35181 4.68206 4.85750 5.04998 5.06895 5.19668 5.25381 5.27928 5.40407 5.44759 5.53595 5.67426 5.73664 5.78970 5.89464 5.91257 5.98519 6.01878 6.05570 6.19280 6.19961 6.33321 6.36151 6.37454 6.49371 6.53915 6.73599 6.81396 6.92131 7.00930 7.19037 7.30508 7.39256 7.47706 7.66101 7.77504 7.90174 8.30788 8.47966 8.62322 9.85352 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010200 B = 0.007194 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.484182 B = 3891.100798 C = 5700.201433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.078 3.922 4 H 0.060 0.940 5 C 0.098 3.902 6 N -0.990 5.990 7 S 2.703 3.297 8 O -0.977 6.977 9 O -0.991 6.991 10 C -0.775 4.775 11 C -0.005 4.005 12 C -0.247 4.247 13 C -0.078 4.078 14 C -0.156 4.156 15 C 0.192 3.808 16 C -0.473 4.473 17 H 0.110 0.890 18 C 0.081 3.919 19 N -0.778 5.778 20 Si 0.900 3.100 21 H -0.258 1.258 22 H -0.272 1.272 23 H -0.251 1.251 24 C 0.124 3.876 25 H 0.079 0.921 26 C -0.175 4.175 27 C 0.058 3.942 28 O -0.376 6.376 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.287 0.713 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.088 0.912 44 H 0.053 0.947 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.763 0.452 -1.581 8.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C 0.018 3.982 4 H 0.078 0.922 5 C -0.027 4.027 6 N -0.826 5.826 7 S 2.804 3.196 8 O -0.967 6.967 9 O -0.982 6.982 10 C -0.870 4.870 11 C -0.025 4.025 12 C -0.267 4.267 13 C -0.097 4.097 14 C -0.175 4.175 15 C 0.187 3.813 16 C -0.501 4.501 17 H 0.128 0.872 18 C -0.140 4.140 19 N -0.402 5.402 20 Si 0.723 3.277 21 H -0.183 1.183 22 H -0.197 1.197 23 H -0.175 1.175 24 C 0.017 3.983 25 H 0.097 0.903 26 C -0.233 4.233 27 C -0.020 4.020 28 O -0.295 6.295 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.142 0.858 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.106 0.894 44 H 0.071 0.929 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.045 0.567 -1.094 9.129 hybrid contribution 0.791 -0.803 -0.400 1.196 sum -8.254 -0.236 -1.494 8.392 Atomic orbital electron populations 1.21694 0.95310 1.01252 1.02107 1.21536 0.96511 0.94322 1.03273 1.22650 0.94325 0.94019 0.87171 0.92241 1.22257 0.93099 0.83012 1.04381 1.57728 1.62216 1.22836 1.39862 1.01047 0.73713 0.72018 0.72814 1.93446 1.87531 1.68953 1.46814 1.93518 1.84305 1.33159 1.87169 1.29850 1.22684 0.99924 1.34579 1.20226 0.94092 0.95453 0.92723 1.20503 0.97677 0.96353 1.12212 1.20914 0.97829 0.93420 0.97506 1.21535 0.95039 0.97267 1.03697 1.17014 0.90340 0.89640 0.84281 1.20418 1.21306 0.93123 1.15258 0.87201 1.25970 0.93352 1.01232 0.93403 1.69780 1.28391 1.30725 1.11263 0.86391 0.80079 0.79829 0.81434 1.18288 1.19706 1.17467 1.21555 0.94861 0.92625 0.89219 0.90264 1.22572 1.04503 0.93538 1.02708 1.22971 0.93774 0.83073 1.02180 1.87879 1.79460 1.23740 1.38404 0.93029 0.92038 0.92931 0.90770 0.90273 0.90071 0.87920 0.87428 0.88711 0.88826 0.85785 0.90223 0.90510 0.91957 0.89369 0.92877 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.81 37.16 0.36 -1.25 16 2 C -0.12 -1.54 5.65 -26.73 -0.15 -1.69 16 3 C 0.08 1.18 2.79 -26.36 -0.07 1.11 16 4 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 5 C 0.10 1.77 4.43 -3.32 -0.01 1.75 16 6 N -0.99 -18.80 3.26 -105.80 -0.35 -19.15 16 7 S 2.70 58.90 4.57 -107.50 -0.49 58.41 16 8 O -0.98 -23.40 14.31 -57.17 -0.82 -24.22 16 9 O -0.99 -21.33 12.23 -57.17 -0.70 -22.03 16 10 C -0.78 -18.38 5.70 -38.87 -0.22 -18.60 16 11 C -0.01 -0.11 8.57 -39.66 -0.34 -0.45 16 12 C -0.25 -5.36 10.05 -39.29 -0.39 -5.75 16 13 C -0.08 -1.74 10.02 -39.66 -0.40 -2.13 16 14 C -0.16 -3.83 8.65 -38.88 -0.34 -4.16 16 15 C 0.19 4.83 5.54 -106.82 -0.59 4.24 16 16 C -0.47 -11.54 6.86 -37.74 -0.26 -11.80 16 17 H 0.11 2.68 4.12 -52.48 -0.22 2.47 16 18 C 0.08 1.86 5.25 -17.35 -0.09 1.77 16 19 N -0.78 -18.17 10.89 55.55 0.60 -17.56 16 20 Si 0.90 17.12 29.57 -169.99 -5.03 12.09 16 21 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 22 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 23 H -0.25 -4.84 7.11 56.52 0.40 -4.44 16 24 C 0.12 2.04 3.70 -67.43 -0.25 1.79 16 25 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 26 C -0.18 -2.80 7.60 37.15 0.28 -2.52 16 27 C 0.06 0.82 6.28 37.31 0.23 1.05 16 28 O -0.38 -5.76 9.92 -35.23 -0.35 -6.11 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.71 7.82 -51.93 -0.41 0.30 16 31 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.53 8.02 -51.93 -0.42 1.11 16 35 H 0.10 1.91 5.84 -51.92 -0.30 1.61 16 36 H 0.11 2.20 6.97 -52.49 -0.37 1.84 16 37 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 39 H 0.12 3.08 6.28 -52.48 -0.33 2.75 16 40 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 41 H 0.08 1.40 4.58 -51.93 -0.24 1.16 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 1.44 6.68 -51.93 -0.35 1.09 16 44 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 45 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 354.92 15.07 5.35 5.35 Total: -1.00 -27.95 354.92 -10.42 -38.37 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -6.40 Total: 11.52 kcal Atomic # 6 Polarization: -34.42 SS G_CDS: -2.24 Total: -36.66 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.26 Total: -36.71 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -1.87 Total: -52.36 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Atomic # 16 Polarization: 58.90 SS G_CDS: -0.49 Total: 58.41 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.95 -10.42 -38.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601454963.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.856 kcal (2) G-P(sol) polarization free energy of solvation -27.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds