Wall clock time and date at job start Tue Mar 31 2020 22:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46936 * 2 1 4 4 H 1.08991 * 109.51419 * 55.09838 * 3 2 1 5 5 C 1.53709 * 109.48535 * 175.36620 * 3 2 1 6 6 N 1.47145 * 108.16309 * 172.39756 * 5 3 2 7 7 S 1.65601 * 120.98432 * 129.42641 * 6 5 3 8 8 O 1.42101 * 106.40231 * 345.78587 * 7 6 5 9 9 O 1.42094 * 106.40563 * 212.86491 * 7 6 5 10 10 C 1.76204 * 107.21860 * 99.32166 * 7 6 5 11 11 C 1.37635 * 120.12536 * 115.38233 * 10 7 6 12 12 C 1.38615 * 120.24859 * 180.02562 * 11 10 7 13 13 C 1.38660 * 120.49639 * 0.02562 * 12 11 10 14 14 C 1.37592 * 120.25209 * 0.02562 * 13 12 11 15 15 C 1.40697 * 120.12918 * 295.63831 * 10 7 6 16 16 C 1.41402 * 120.24466 * 0.02562 * 15 10 7 17 17 H 1.08006 * 119.99778 * 330.48218 * 16 15 10 18 18 C 1.39937 * 120.00118 * 150.47794 * 16 15 10 19 19 N 1.30821 * 120.00172 * 349.56935 * 18 16 15 20 20 Si 1.86798 * 119.99950 * 169.56941 * 18 16 15 21 21 H 1.48499 * 109.47396 * 90.00322 * 20 18 16 22 22 H 1.48505 * 109.47140 * 209.99836 * 20 18 16 23 23 H 1.48496 * 109.47209 * 329.99818 * 20 18 16 24 24 C 1.47152 * 118.03863 * 309.15629 * 6 5 3 25 25 H 1.09002 * 109.67512 * 291.02706 * 24 6 5 26 26 C 1.52995 * 109.68765 * 170.51133 * 24 6 5 27 27 C 1.53294 * 108.38372 * 50.78261 * 24 6 5 28 28 O 1.42965 * 109.22441 * 307.70211 * 27 24 6 29 29 H 1.08998 * 109.47446 * 300.00075 * 1 2 3 30 30 H 1.08997 * 109.47134 * 60.00411 * 1 2 3 31 31 H 1.09008 * 109.47040 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47446 * 239.99925 * 2 1 3 33 33 H 1.08997 * 109.47134 * 119.99589 * 2 1 3 34 34 H 1.09000 * 109.84280 * 52.71167 * 5 3 2 35 35 H 1.09010 * 109.74258 * 292.02028 * 5 3 2 36 36 H 1.07999 * 119.87951 * 0.02562 * 11 10 7 37 37 H 1.08001 * 119.75548 * 180.02562 * 12 11 10 38 38 H 1.08003 * 119.87020 * 180.02562 * 13 12 11 39 39 H 1.08005 * 120.12609 * 179.97438 * 14 13 12 40 40 H 0.96999 * 120.00426 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.46879 * 51.56690 * 26 24 6 42 42 H 1.08999 * 109.47563 * 171.57518 * 26 24 6 43 43 H 1.09005 * 109.46568 * 291.57322 * 26 24 6 44 44 H 1.08999 * 109.51036 * 67.62547 * 27 24 6 45 45 H 1.09000 * 109.51222 * 187.73148 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6071 1.9817 0.8425 5 6 3.5726 1.4446 0.1171 6 7 4.0451 2.8255 -0.0697 7 16 5.0873 3.5235 1.0114 8 8 5.0842 2.6936 2.1649 9 8 4.7612 4.9061 1.0479 10 6 6.7053 3.4119 0.3226 11 6 7.3917 4.5554 -0.0175 12 6 8.6644 4.4706 -0.5600 13 6 9.2603 3.2358 -0.7668 14 6 8.5924 2.0795 -0.4352 15 6 7.2985 2.1534 0.1132 16 6 6.6005 0.9716 0.4533 17 1 5.8836 0.9814 1.2611 18 6 6.8385 -0.2105 -0.2567 19 7 7.5458 -0.1816 -1.3569 20 14 6.1465 -1.8298 0.3664 21 1 4.7964 -2.0468 -0.2129 22 1 7.0439 -2.9409 -0.0403 23 1 6.0489 -1.7891 1.8476 24 6 3.5689 3.5660 -1.2488 25 1 3.9996 3.1339 -2.1521 26 6 3.9787 5.0356 -1.1347 27 6 2.0406 3.4588 -1.3023 28 8 1.6622 2.0825 -1.2214 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.0032 0.8022 -0.6511 35 1 3.8670 1.0861 1.1035 36 1 6.9369 5.5225 0.1389 37 1 9.1959 5.3730 -0.8236 38 1 10.2526 3.1815 -1.1898 39 1 9.0583 1.1187 -0.5975 40 1 7.7111 -1.0010 -1.8489 41 1 5.0470 5.0999 -0.9279 42 1 3.7583 5.5481 -2.0711 43 1 3.4227 5.5058 -0.3235 44 1 1.6078 4.0053 -0.4644 45 1 1.6785 3.8821 -2.2392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601454963.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:22 Heat of formation + Delta-G solvation = -113.544670 kcal Electronic energy + Delta-G solvation = -29965.013534 eV Core-core repulsion = 26073.640202 eV Total energy + Delta-G solvation = -3891.373332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.53818 -39.39855 -38.43597 -36.78330 -36.31064 -35.67253 -34.94791 -32.34487 -32.03645 -31.36499 -28.48808 -27.41748 -27.11534 -24.31041 -23.48961 -22.98062 -22.79609 -21.81619 -19.77129 -19.46358 -18.30652 -17.90887 -17.62958 -17.23544 -17.05605 -16.32230 -16.03665 -15.82597 -15.60717 -15.47159 -15.08769 -14.87882 -14.60068 -14.49338 -14.26891 -13.92838 -13.74069 -13.40683 -13.26331 -13.03819 -12.96313 -12.92190 -12.87349 -12.81929 -12.63266 -12.38539 -12.18678 -12.07746 -11.96855 -11.86738 -11.77862 -11.65627 -11.26600 -11.18640 -11.06342 -10.87369 -9.89618 -9.58598 -9.43458 -8.79966 -6.64268 -0.23595 0.52146 0.95646 1.35142 1.44281 1.50196 2.13330 2.15505 2.60510 2.79884 2.96467 3.46039 3.56217 3.72603 3.80037 3.98033 4.09818 4.12134 4.23474 4.29352 4.36281 4.47439 4.49870 4.61351 4.67567 4.70093 4.72784 4.80008 4.86028 4.96373 5.02477 5.08620 5.13978 5.15193 5.20876 5.26300 5.27112 5.47546 5.49928 5.52286 5.66609 5.74930 5.85802 5.98434 6.11112 6.22374 6.49297 6.68835 6.82190 8.15513 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010200 B = 0.007194 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.484182 B = 3891.100798 C = 5700.201433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.082 3.918 4 H 0.067 0.933 5 C 0.095 3.905 6 N -0.989 5.989 7 S 2.716 3.284 8 O -1.005 7.005 9 O -0.991 6.991 10 C -0.795 4.795 11 C -0.015 4.015 12 C -0.250 4.250 13 C -0.078 4.078 14 C -0.186 4.186 15 C 0.164 3.836 16 C -0.493 4.493 17 H 0.102 0.898 18 C 0.051 3.949 19 N -0.802 5.802 20 Si 0.951 3.049 21 H -0.238 1.238 22 H -0.262 1.262 23 H -0.258 1.258 24 C 0.117 3.883 25 H 0.072 0.928 26 C -0.174 4.174 27 C 0.060 3.940 28 O -0.380 6.380 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.295 0.705 41 H 0.052 0.948 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.062 0.938 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.346 0.593 -2.360 10.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C 0.022 3.978 4 H 0.084 0.916 5 C -0.030 4.030 6 N -0.827 5.827 7 S 2.815 3.185 8 O -0.995 6.995 9 O -0.982 6.982 10 C -0.888 4.888 11 C -0.034 4.034 12 C -0.270 4.270 13 C -0.096 4.096 14 C -0.205 4.205 15 C 0.159 3.841 16 C -0.521 4.521 17 H 0.120 0.880 18 C -0.168 4.168 19 N -0.426 5.426 20 Si 0.770 3.230 21 H -0.161 1.161 22 H -0.187 1.187 23 H -0.182 1.182 24 C 0.011 3.989 25 H 0.090 0.910 26 C -0.233 4.233 27 C -0.018 4.018 28 O -0.299 6.299 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.131 0.869 40 H 0.106 0.894 41 H 0.071 0.929 42 H 0.115 0.885 43 H 0.103 0.897 44 H 0.080 0.920 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.606 0.726 -1.889 10.797 hybrid contribution 1.330 -0.740 -0.206 1.536 sum -9.275 -0.014 -2.095 9.509 Atomic orbital electron populations 1.21649 0.93517 1.02389 1.02205 1.21601 0.98040 0.92741 1.03437 1.22676 0.91926 0.95632 0.87523 0.91557 1.22331 0.95332 0.82197 1.03187 1.57585 1.61307 1.23441 1.40372 1.00611 0.73350 0.71852 0.72640 1.93400 1.87830 1.69670 1.48621 1.93517 1.84130 1.33145 1.87389 1.30238 1.24212 0.99968 1.34419 1.20553 0.94559 0.95823 0.92487 1.20904 0.97519 0.97340 1.11267 1.21252 0.98862 0.93025 0.96477 1.21574 0.95504 0.97717 1.05747 1.17348 0.90961 0.90598 0.85152 1.20486 1.21854 0.94053 1.15729 0.87985 1.26636 0.93352 1.03607 0.93161 1.69808 1.28947 1.31901 1.11927 0.85644 0.80654 0.76254 0.80490 1.16126 1.18652 1.18164 1.21816 0.96798 0.92531 0.87731 0.91027 1.22545 1.02762 0.93473 1.04471 1.23127 0.91597 0.82750 1.04351 1.87884 1.79143 1.24448 1.38411 0.92342 0.92491 0.91317 0.91308 0.89488 0.91502 0.89124 0.85812 0.85467 0.86086 0.86937 0.89427 0.92935 0.88477 0.89700 0.92004 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.81 71.98 0.71 -2.05 16 2 C -0.12 -2.92 5.65 30.60 0.17 -2.75 16 3 C 0.08 2.39 2.79 30.83 0.09 2.47 16 4 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 5 C 0.10 3.45 4.43 86.49 0.38 3.83 16 6 N -0.99 -37.65 3.26 -488.64 -1.60 -39.24 16 7 S 2.72 120.12 4.57 -56.49 -0.26 119.86 16 8 O -1.00 -49.52 14.31 -128.00 -1.83 -51.35 16 9 O -0.99 -42.56 12.23 -128.00 -1.56 -44.13 16 10 C -0.79 -38.44 5.70 22.73 0.13 -38.31 16 11 C -0.01 -0.65 8.57 22.22 0.19 -0.46 16 12 C -0.25 -10.59 10.05 22.46 0.23 -10.36 16 13 C -0.08 -3.44 10.02 22.22 0.22 -3.22 16 14 C -0.19 -9.36 8.65 22.73 0.20 -9.16 16 15 C 0.16 8.51 5.54 -21.29 -0.12 8.39 16 16 C -0.49 -24.90 6.86 23.46 0.16 -24.74 16 17 H 0.10 5.20 4.12 -2.91 -0.01 5.19 16 18 C 0.05 2.39 5.25 85.25 0.45 2.84 16 19 N -0.80 -38.22 10.89 21.82 0.24 -37.98 16 20 Si 0.95 35.02 29.57 68.60 2.03 37.05 16 21 H -0.24 -7.92 7.11 99.48 0.71 -7.22 16 22 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 23 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 24 C 0.12 3.73 3.70 44.96 0.17 3.89 16 25 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 26 C -0.17 -5.32 7.60 71.98 0.55 -4.77 16 27 C 0.06 1.53 6.28 72.08 0.45 1.98 16 28 O -0.38 -10.89 9.92 -148.98 -1.48 -12.37 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.17 7.82 -2.39 -0.02 1.15 16 31 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 2.57 8.02 -2.39 -0.02 2.55 16 35 H 0.09 3.47 5.84 -2.38 -0.01 3.45 16 36 H 0.12 4.99 6.97 -2.91 -0.02 4.97 16 37 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 38 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 39 H 0.11 5.80 6.28 -2.91 -0.02 5.78 16 40 H 0.29 12.62 8.30 -92.71 -0.77 11.86 16 41 H 0.05 1.87 4.58 -2.39 -0.01 1.86 16 42 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.08 2.63 6.68 -2.38 -0.02 2.62 16 44 H 0.06 1.50 8.09 -2.39 -0.02 1.48 16 45 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -61.17 354.92 0.51 -60.66 By element: Atomic # 1 Polarization: 38.90 SS G_CDS: 1.00 Total: 39.90 kcal Atomic # 6 Polarization: -76.39 SS G_CDS: 3.97 Total: -72.42 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -1.36 Total: -77.22 kcal Atomic # 8 Polarization: -102.97 SS G_CDS: -4.87 Total: -107.85 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 2.03 Total: 37.05 kcal Atomic # 16 Polarization: 120.12 SS G_CDS: -0.26 Total: 119.86 kcal Total: -61.17 0.51 -60.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601454963.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.881 kcal (2) G-P(sol) polarization free energy of solvation -61.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds