Wall clock time and date at job start Tue Mar 31 2020 22:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47426 * 2 1 4 4 H 1.09002 * 109.51420 * 304.90049 * 3 2 1 5 5 C 1.52875 * 109.58298 * 184.88588 * 3 2 1 6 6 N 1.47152 * 108.60805 * 187.92593 * 5 3 2 7 7 S 1.65598 * 120.98117 * 230.50089 * 6 5 3 8 8 O 1.42107 * 106.40214 * 150.22784 * 7 6 5 9 9 O 1.42101 * 106.40413 * 17.30746 * 7 6 5 10 10 C 1.76202 * 107.21838 * 263.76776 * 7 6 5 11 11 C 1.37640 * 120.12748 * 242.78319 * 10 7 6 12 12 C 1.38612 * 120.24796 * 180.29793 * 11 10 7 13 13 C 1.38656 * 120.49937 * 359.43903 * 12 11 10 14 14 C 1.37594 * 120.24877 * 0.55957 * 13 12 11 15 15 C 1.40695 * 120.12537 * 62.79989 * 10 7 6 16 16 C 1.41396 * 120.24752 * 359.96128 * 15 10 7 17 17 H 1.07999 * 119.99542 * 30.71068 * 16 15 10 18 18 C 1.39944 * 120.00226 * 210.71626 * 16 15 10 19 19 N 1.30826 * 119.99861 * 9.97354 * 18 16 15 20 20 Si 1.86796 * 120.00137 * 189.97800 * 18 16 15 21 21 H 1.48502 * 109.47074 * 89.99479 * 20 18 16 22 22 H 1.48497 * 109.46847 * 209.99861 * 20 18 16 23 23 H 1.48498 * 109.47006 * 329.99961 * 20 18 16 24 24 C 1.47147 * 118.03629 * 50.22179 * 6 5 3 25 25 H 1.08999 * 109.68547 * 189.99969 * 24 6 5 26 26 C 1.52999 * 109.68581 * 69.48150 * 24 6 5 27 27 C 1.53295 * 108.38710 * 309.71952 * 24 6 5 28 28 O 1.42961 * 109.50862 * 64.99946 * 3 2 1 29 29 H 1.09007 * 109.47024 * 299.99848 * 1 2 3 30 30 H 1.09004 * 109.47218 * 59.99399 * 1 2 3 31 31 H 1.09000 * 109.47630 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47024 * 240.00152 * 2 1 3 33 33 H 1.08997 * 109.47500 * 120.00302 * 2 1 3 34 34 H 1.08991 * 109.62034 * 68.10151 * 5 3 2 35 35 H 1.09002 * 109.52405 * 307.68649 * 5 3 2 36 36 H 1.08001 * 119.87693 * 0.02562 * 11 10 7 37 37 H 1.08002 * 119.74983 * 179.69982 * 12 11 10 38 38 H 1.07999 * 119.87410 * 180.30481 * 13 12 11 39 39 H 1.08005 * 120.12976 * 179.70309 * 14 13 12 40 40 H 0.96997 * 120.00417 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.47226 * 59.99230 * 26 24 6 42 42 H 1.08994 * 109.48045 * 180.02562 * 26 24 6 43 43 H 1.09007 * 109.46776 * 300.00253 * 26 24 6 44 44 H 1.09000 * 109.51653 * 172.22362 * 27 24 6 45 45 H 1.09008 * 109.51427 * 292.37702 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6072 1.9817 -0.8426 5 6 3.5638 1.4471 -0.1227 6 7 4.0463 2.8238 0.0707 7 16 5.0886 3.5215 -1.0105 8 8 4.8205 4.9168 -0.9832 9 8 5.0202 2.7401 -2.1954 10 6 6.7178 3.3153 -0.3718 11 6 7.4748 4.4163 -0.0413 12 6 8.7590 4.2572 0.4555 13 6 9.2915 2.9898 0.6362 14 6 8.5529 1.8749 0.3126 15 6 7.2500 2.0246 -0.1981 16 6 6.4815 0.8861 -0.5337 17 1 5.7564 0.9404 -1.3323 18 6 6.6603 -0.3109 0.1689 19 7 7.3890 -0.3290 1.2553 20 14 5.8588 -1.8827 -0.4445 21 1 6.7834 -2.5796 -1.3744 22 1 5.5572 -2.7674 0.7094 23 1 4.5985 -1.5504 -1.1563 24 6 3.5703 3.5643 1.2498 25 1 3.8630 4.6111 1.1688 26 6 4.1738 2.9572 2.5179 27 6 2.0419 3.4584 1.3027 28 8 1.6623 2.0824 1.2213 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8524 1.0925 -1.1121 35 1 3.9927 0.7973 0.6402 36 1 7.0682 5.4081 -0.1737 37 1 9.3476 5.1268 0.7077 38 1 10.2914 2.8774 1.0287 39 1 8.9714 0.8888 0.4497 40 1 7.5133 -1.1587 1.7421 41 1 5.2610 3.0176 2.4677 42 1 3.8188 3.5078 3.3890 43 1 3.8714 1.9132 2.6003 44 1 1.6798 3.8810 2.2399 45 1 1.6097 4.0055 0.4648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601454964.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:27 Heat of formation + Delta-G solvation = -108.927256 kcal Electronic energy + Delta-G solvation = -30038.221253 eV Core-core repulsion = 26147.048147 eV Total energy + Delta-G solvation = -3891.173106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.37756 -37.63099 -36.45171 -35.00378 -34.94144 -34.00719 -33.72638 -30.89127 -30.25299 -29.58575 -27.54550 -25.91548 -25.55773 -23.58753 -21.83538 -21.35447 -21.18601 -19.97653 -18.08076 -17.65325 -17.31704 -16.44271 -16.10895 -15.47955 -15.31055 -14.95536 -14.76844 -14.41529 -14.23258 -13.63197 -13.52158 -13.32727 -13.25888 -12.95689 -12.79348 -12.52271 -12.00141 -11.93509 -11.80954 -11.71261 -11.45153 -11.32215 -11.25930 -11.21437 -11.15824 -11.05513 -10.89391 -10.82891 -10.75679 -10.57486 -10.55082 -10.03676 -9.91807 -9.69483 -9.50303 -9.22577 -8.27984 -8.01813 -7.61713 -7.07308 -4.82181 1.41850 2.30154 2.68259 2.92841 2.95976 3.05194 3.70791 3.72287 3.95034 4.35322 4.67242 4.86424 5.05530 5.14939 5.20326 5.27108 5.33577 5.41118 5.44916 5.57209 5.68219 5.76899 5.80821 5.89925 5.94164 6.00131 6.03622 6.06226 6.19803 6.20016 6.32076 6.35778 6.36868 6.50805 6.61569 6.74942 6.81981 6.92198 7.00790 7.18234 7.30036 7.41685 7.47590 7.65460 7.77069 7.89663 8.29815 8.47884 8.61846 9.85995 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010625 B = 0.007050 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.781049 B = 3970.503719 C = 5447.846047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.077 3.923 4 H 0.058 0.942 5 C 0.099 3.901 6 N -0.988 5.988 7 S 2.703 3.297 8 O -0.995 6.995 9 O -0.974 6.974 10 C -0.772 4.772 11 C -0.005 4.005 12 C -0.246 4.246 13 C -0.078 4.078 14 C -0.155 4.155 15 C 0.194 3.806 16 C -0.474 4.474 17 H 0.109 0.891 18 C 0.083 3.917 19 N -0.778 5.778 20 Si 0.901 3.099 21 H -0.263 1.263 22 H -0.273 1.273 23 H -0.250 1.250 24 C 0.117 3.883 25 H 0.101 0.899 26 C -0.155 4.155 27 C 0.060 3.940 28 O -0.373 6.373 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.123 0.877 40 H 0.286 0.714 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.100 0.900 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.517 -0.140 2.188 8.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C 0.018 3.982 4 H 0.076 0.924 5 C -0.026 4.026 6 N -0.824 5.824 7 S 2.803 3.197 8 O -0.986 6.986 9 O -0.965 6.965 10 C -0.868 4.868 11 C -0.025 4.025 12 C -0.266 4.266 13 C -0.096 4.096 14 C -0.175 4.175 15 C 0.190 3.810 16 C -0.503 4.503 17 H 0.127 0.873 18 C -0.138 4.138 19 N -0.402 5.402 20 Si 0.724 3.276 21 H -0.188 1.188 22 H -0.197 1.197 23 H -0.173 1.173 24 C 0.011 3.989 25 H 0.118 0.882 26 C -0.213 4.213 27 C -0.019 4.019 28 O -0.292 6.292 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.141 0.859 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.118 0.882 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.816 0.021 1.723 8.983 hybrid contribution 0.754 -0.799 0.302 1.139 sum -8.063 -0.778 2.025 8.349 Atomic orbital electron populations 1.21690 0.95322 1.01215 1.02095 1.21533 0.96488 0.94349 1.03226 1.22493 0.94534 0.94013 0.87180 0.92379 1.22111 0.92954 0.83174 1.04385 1.57726 1.61995 1.23356 1.39288 1.01007 0.73860 0.71756 0.73075 1.93432 1.85774 1.32172 1.87252 1.93467 1.87392 1.70972 1.44625 1.29853 1.22256 1.00219 1.34423 1.20230 0.93775 0.95821 0.92645 1.20501 0.97318 0.96125 1.12696 1.20914 0.97854 0.93406 0.97473 1.21512 0.94465 0.97621 1.03857 1.16994 0.90681 0.89348 0.83989 1.20373 1.19725 0.94244 1.15936 0.87318 1.25933 0.93836 1.00680 0.93362 1.69778 1.29163 1.29478 1.11745 0.86392 0.81235 0.80285 0.79720 1.18820 1.19744 1.17278 1.21536 0.94685 0.96534 0.86183 0.88152 1.22014 1.02000 1.01870 0.95464 1.22880 0.93583 0.83335 1.02062 1.87876 1.79379 1.23594 1.38306 0.92032 0.93051 0.92973 0.90298 0.90830 0.87872 0.90043 0.87550 0.88714 0.88837 0.85898 0.90259 0.91446 0.92535 0.91650 0.88229 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.81 37.15 0.36 -1.25 16 2 C -0.12 -1.54 5.64 -26.73 -0.15 -1.69 16 3 C 0.08 1.16 2.76 -26.80 -0.07 1.09 16 4 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 5 C 0.10 1.78 3.83 -3.75 -0.01 1.76 16 6 N -0.99 -18.59 2.96 -106.28 -0.31 -18.90 16 7 S 2.70 59.29 5.11 -107.50 -0.55 58.74 16 8 O -1.00 -22.45 15.77 -57.17 -0.90 -23.35 16 9 O -0.97 -23.22 14.53 -57.17 -0.83 -24.05 16 10 C -0.77 -18.26 5.96 -38.87 -0.23 -18.49 16 11 C 0.00 -0.11 9.53 -39.66 -0.38 -0.49 16 12 C -0.25 -5.33 10.05 -39.29 -0.39 -5.73 16 13 C -0.08 -1.72 10.02 -39.66 -0.40 -2.12 16 14 C -0.15 -3.76 8.65 -38.87 -0.34 -4.09 16 15 C 0.19 4.82 5.53 -106.82 -0.59 4.23 16 16 C -0.47 -11.34 6.47 -37.74 -0.24 -11.58 16 17 H 0.11 2.60 4.03 -52.49 -0.21 2.39 16 18 C 0.08 1.85 5.26 -17.34 -0.09 1.76 16 19 N -0.78 -17.85 10.94 55.55 0.61 -17.24 16 20 Si 0.90 16.92 29.57 -169.99 -5.03 11.89 16 21 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 22 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 23 H -0.25 -4.45 7.11 56.52 0.40 -4.05 16 24 C 0.12 1.90 3.28 -67.43 -0.22 1.68 16 25 H 0.10 1.60 7.09 -51.93 -0.37 1.24 16 26 C -0.15 -2.48 9.25 37.16 0.34 -2.13 16 27 C 0.06 0.83 6.36 37.31 0.24 1.06 16 28 O -0.37 -5.58 9.55 -35.23 -0.34 -5.91 16 29 H 0.06 0.71 7.83 -51.92 -0.41 0.30 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.10 1.94 5.62 -51.93 -0.29 1.65 16 35 H 0.08 1.51 7.42 -51.93 -0.39 1.13 16 36 H 0.11 2.23 7.33 -52.49 -0.38 1.84 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 38 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.12 3.01 6.35 -52.48 -0.33 2.68 16 40 H 0.29 5.99 8.30 -40.82 -0.34 5.65 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 1.10 7.25 -51.93 -0.38 0.72 16 44 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 LS Contribution 362.74 15.07 5.47 5.47 Total: -1.00 -27.78 362.74 -10.61 -38.38 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -6.54 Total: 10.97 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: -2.18 Total: -35.98 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.29 Total: -36.14 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -2.07 Total: -53.32 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.89 kcal Atomic # 16 Polarization: 59.29 SS G_CDS: -0.55 Total: 58.74 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -27.78 -10.61 -38.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601454964.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.543 kcal (2) G-P(sol) polarization free energy of solvation -27.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds