Wall clock time and date at job start Tue Mar 31 2020 23:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 110.64303 * 2 1 4 4 C 1.54319 * 110.87541 * 236.74548 * 2 1 3 5 5 N 1.47021 * 107.27178 * 219.37857 * 4 2 1 6 6 S 1.65599 * 125.64506 * 178.89700 * 5 4 2 7 7 O 1.42105 * 106.40054 * 209.78015 * 6 5 4 8 8 O 1.42100 * 106.40366 * 342.70346 * 6 5 4 9 9 C 1.76202 * 107.21995 * 96.24504 * 6 5 4 10 10 C 1.37635 * 120.12918 * 114.58772 * 9 6 5 11 11 C 1.38616 * 120.24684 * 179.97438 * 10 9 6 12 12 C 1.38657 * 120.50406 * 0.02562 * 11 10 9 13 13 C 1.37600 * 120.24390 * 0.02861 * 12 11 10 14 14 C 1.40705 * 120.12326 * 294.31482 * 9 6 5 15 15 C 1.41397 * 120.24425 * 359.97438 * 14 9 6 16 16 H 1.07998 * 120.00021 * 331.98760 * 15 14 9 17 17 C 1.39943 * 119.99644 * 151.98508 * 15 14 9 18 18 N 1.30820 * 120.00170 * 344.72850 * 17 15 14 19 19 Si 1.86805 * 119.99834 * 164.72871 * 17 15 14 20 20 H 1.48504 * 109.46825 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.46932 * 120.00168 * 19 17 15 22 22 H 1.48503 * 109.47109 * 240.00310 * 19 17 15 23 23 C 1.47421 * 108.70368 * 358.94107 * 5 4 2 24 24 C 1.54910 * 104.83244 * 24.13028 * 23 5 4 25 25 C 1.52999 * 111.00290 * 81.06674 * 24 23 5 26 26 C 1.52996 * 111.03576 * 204.90407 * 24 23 5 27 27 O 1.42905 * 109.47092 * 295.39456 * 26 24 23 28 28 H 1.09000 * 109.47462 * 296.86336 * 1 2 3 29 29 H 1.09006 * 109.46633 * 56.86352 * 1 2 3 30 30 H 1.08997 * 109.47384 * 176.85846 * 1 2 3 31 31 H 1.09006 * 109.88383 * 338.79747 * 4 2 1 32 32 H 1.08996 * 109.88118 * 99.95608 * 4 2 1 33 33 H 1.07999 * 119.87891 * 359.97438 * 10 9 6 34 34 H 1.07996 * 119.74843 * 180.02562 * 11 10 9 35 35 H 1.07995 * 119.87905 * 180.02562 * 12 11 10 36 36 H 1.08002 * 120.12236 * 179.97438 * 13 12 11 37 37 H 0.97000 * 120.00073 * 179.97438 * 18 17 15 38 38 H 1.09004 * 110.36831 * 265.29168 * 23 5 4 39 39 H 1.08999 * 110.36594 * 142.97169 * 23 5 4 40 40 H 1.08999 * 109.47058 * 307.80108 * 25 24 23 41 41 H 1.08996 * 109.47437 * 67.80543 * 25 24 23 42 42 H 1.09002 * 109.46488 * 187.80283 * 25 24 23 43 43 H 1.09004 * 109.47883 * 55.39233 * 26 24 23 44 44 H 1.08997 * 109.47103 * 175.39514 * 26 24 23 45 45 H 0.96701 * 114.00010 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0799 -0.7907 -1.2058 5 7 3.2494 -1.5471 -0.7350 6 16 4.1711 -2.5703 -1.6549 7 8 4.6774 -3.5597 -0.7693 8 8 3.3986 -2.8801 -2.8066 9 6 5.5631 -1.6509 -2.2219 10 6 6.8300 -1.9853 -1.8005 11 6 7.9269 -1.2640 -2.2455 12 6 7.7622 -0.1990 -3.1179 13 6 6.5047 0.1537 -3.5514 14 6 5.3844 -0.5757 -3.1117 15 6 4.0882 -0.2270 -3.5562 16 1 3.3161 -0.9801 -3.6132 17 6 3.8058 1.0938 -3.9223 18 7 4.6233 2.0563 -3.5807 19 14 2.2614 1.4825 -4.8987 20 1 1.5105 0.2277 -5.1575 21 1 1.4088 2.4195 -4.1240 22 1 2.6377 2.1092 -6.1914 23 6 3.4651 -1.2447 0.6916 24 6 2.0788 -0.7934 1.2153 25 6 1.1916 -1.9998 1.5286 26 6 2.2226 0.1110 2.4409 27 8 2.7984 -0.6327 3.5168 28 1 -0.3634 0.4644 0.9167 29 1 -0.3633 0.5618 -0.8606 30 1 -0.3634 -1.0261 -0.0563 31 1 1.3191 -1.4774 -1.5769 32 1 2.3776 -0.1017 -1.9962 33 1 6.9701 -2.8127 -1.1207 34 1 8.9175 -1.5336 -1.9100 35 1 8.6239 0.3558 -3.4585 36 1 6.3786 0.9839 -4.2306 37 1 4.4277 2.9718 -3.8348 38 1 4.1929 -0.4409 0.8033 39 1 3.7991 -2.1364 1.2221 40 1 1.1607 -2.6625 0.6638 41 1 1.5991 -2.5380 2.3844 42 1 0.1829 -1.6583 1.7609 43 1 2.8679 0.9548 2.1963 44 1 1.2406 0.4788 2.7382 45 1 2.9187 -0.1211 4.3285 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601470342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:24 Heat of formation + Delta-G solvation = -133.004901 kcal Electronic energy + Delta-G solvation = -29585.139487 eV Core-core repulsion = 25692.922296 eV Total energy + Delta-G solvation = -3892.217191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.66552 -39.40478 -38.16124 -37.26731 -36.75074 -35.72374 -34.01913 -32.07254 -31.88554 -31.38482 -27.89393 -27.50801 -26.84620 -26.16529 -23.45660 -22.97624 -22.26608 -19.90039 -19.71076 -19.50001 -18.66768 -18.05630 -17.77621 -17.28374 -16.83937 -16.39140 -16.01964 -15.84331 -15.37239 -15.25408 -14.94946 -14.63032 -14.47916 -14.43013 -13.95509 -13.75438 -13.71478 -13.37833 -13.19074 -13.15617 -13.03038 -12.99308 -12.92269 -12.82891 -12.78998 -12.62776 -12.39701 -12.16815 -11.90842 -11.67080 -11.56581 -11.38269 -11.31027 -11.14616 -11.01074 -10.76059 -9.90446 -9.71365 -9.47386 -8.83766 -6.62636 -0.26160 0.51084 0.93830 1.36493 1.45819 1.51706 2.15351 2.26322 2.58094 2.95688 3.20142 3.38134 3.53358 3.65397 3.86533 4.04409 4.27948 4.29226 4.31759 4.41752 4.46372 4.54939 4.58378 4.66951 4.68455 4.71554 4.84834 4.93029 4.96730 5.02041 5.06716 5.09752 5.14018 5.19057 5.24859 5.33910 5.34797 5.40026 5.51212 5.60558 5.62864 5.71198 5.83361 5.97192 6.11083 6.49156 6.67369 6.80702 7.02936 8.13218 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010154 B = 0.006290 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.908936 B = 4450.378166 C = 5721.559514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 H 0.087 0.913 4 C 0.112 3.888 5 N -1.002 6.002 6 S 2.731 3.269 7 O -1.009 7.009 8 O -0.997 6.997 9 C -0.800 4.800 10 C -0.018 4.018 11 C -0.252 4.252 12 C -0.075 4.075 13 C -0.185 4.185 14 C 0.165 3.835 15 C -0.490 4.490 16 H 0.104 0.896 17 C 0.055 3.945 18 N -0.792 5.792 19 Si 0.955 3.045 20 H -0.259 1.259 21 H -0.243 1.243 22 H -0.261 1.261 23 C 0.130 3.870 24 C -0.060 4.060 25 C -0.129 4.129 26 C 0.098 3.902 27 O -0.587 6.587 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.117 0.883 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.298 0.702 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.040 0.960 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.049 0.951 44 H 0.077 0.923 45 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.526 4.166 9.706 13.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.103 4.103 3 H 0.106 0.894 4 C -0.013 4.013 5 N -0.840 5.840 6 S 2.831 3.169 7 O -1.000 7.000 8 O -0.988 6.988 9 C -0.895 4.895 10 C -0.038 4.038 11 C -0.272 4.272 12 C -0.094 4.094 13 C -0.205 4.205 14 C 0.161 3.839 15 C -0.517 4.517 16 H 0.122 0.878 17 C -0.165 4.165 18 N -0.415 5.415 19 Si 0.774 3.226 20 H -0.182 1.182 21 H -0.167 1.167 22 H -0.186 1.186 23 C 0.005 3.995 24 C -0.062 4.062 25 C -0.186 4.186 26 C 0.020 3.980 27 O -0.396 6.396 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.135 0.865 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -8.662 2.994 9.043 12.875 hybrid contribution 0.661 1.150 -0.479 1.410 sum -8.001 4.144 8.563 12.430 Atomic orbital electron populations 1.21853 0.91788 1.02910 1.03234 1.22228 0.97736 0.98691 0.91673 0.89449 1.22166 0.86128 0.94782 0.98203 1.58189 1.42071 1.63341 1.20384 0.99933 0.72908 0.72382 0.71702 1.93404 1.81657 1.58065 1.66852 1.93419 1.71164 1.83877 1.50333 1.30185 1.14572 1.23332 1.21373 1.20550 0.91973 0.96366 0.94916 1.20870 0.97995 1.01229 1.07101 1.21241 0.96859 0.95648 0.95634 1.21528 0.92286 1.02705 1.03993 1.17327 0.94215 0.87242 0.85154 1.20541 0.97047 0.96236 1.37895 0.87823 1.26624 1.01338 0.94998 0.93588 1.69822 1.36531 1.02320 1.32847 0.85544 0.77966 0.79965 0.79114 1.18219 1.16685 1.18561 1.22061 0.98293 1.00147 0.78981 1.21775 0.93693 0.96723 0.94041 1.21702 0.99804 0.96236 1.00866 1.22047 0.98219 0.92106 0.85674 1.86467 1.85434 1.42773 1.24881 0.89869 0.91902 0.91730 0.91868 0.91086 0.86527 0.85515 0.85793 0.86794 0.89111 0.92654 0.91383 0.94124 0.92389 0.89667 0.93228 0.90544 0.75415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.12 71.98 0.58 -2.09 16 2 C -0.08 -2.17 2.87 -9.60 -0.03 -2.19 16 3 H 0.09 2.23 8.04 -2.39 -0.02 2.22 16 4 C 0.11 3.98 5.60 86.73 0.49 4.47 16 5 N -1.00 -40.19 3.64 -506.44 -1.84 -42.03 16 6 S 2.73 130.15 5.28 -56.49 -0.30 129.85 16 7 O -1.01 -49.76 16.40 -128.00 -2.10 -51.86 16 8 O -1.00 -51.68 15.14 -128.00 -1.94 -53.62 16 9 C -0.80 -40.64 5.97 22.73 0.14 -40.50 16 10 C -0.02 -0.87 9.53 22.22 0.21 -0.66 16 11 C -0.25 -11.09 10.05 22.46 0.23 -10.86 16 12 C -0.08 -3.38 10.02 22.22 0.22 -3.16 16 13 C -0.19 -9.37 8.67 22.73 0.20 -9.17 16 14 C 0.17 8.71 5.54 -21.29 -0.12 8.59 16 15 C -0.49 -24.83 6.10 23.46 0.14 -24.69 16 16 H 0.10 5.40 4.70 -2.91 -0.01 5.39 16 17 C 0.05 2.50 4.86 85.26 0.41 2.91 16 18 N -0.79 -36.61 11.03 21.83 0.24 -36.37 16 19 Si 0.95 34.67 29.59 68.60 2.03 36.70 16 20 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 21 H -0.24 -7.87 7.11 99.48 0.71 -7.16 16 22 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 23 C 0.13 4.53 5.90 86.86 0.51 5.04 16 24 C -0.06 -1.56 0.56 -50.79 -0.03 -1.59 16 25 C -0.13 -3.14 7.40 71.98 0.53 -2.61 16 26 C 0.10 1.92 5.99 71.98 0.43 2.35 16 27 O -0.59 -11.90 12.81 -148.98 -1.91 -13.81 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.06 1.23 6.68 -2.39 -0.02 1.21 16 31 H 0.06 2.16 7.78 -2.38 -0.02 2.15 16 32 H 0.07 2.82 5.28 -2.39 -0.01 2.81 16 33 H 0.12 5.18 7.32 -2.91 -0.02 5.16 16 34 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 35 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 36 H 0.11 5.79 6.31 -2.91 -0.02 5.77 16 37 H 0.30 12.16 8.30 -92.71 -0.77 11.39 16 38 H 0.06 1.96 8.03 -2.39 -0.02 1.94 16 39 H 0.07 2.48 7.73 -2.39 -0.02 2.46 16 40 H 0.04 1.12 7.91 -2.39 -0.02 1.10 16 41 H 0.06 1.47 7.65 -2.39 -0.02 1.45 16 42 H 0.08 1.57 6.76 -2.39 -0.02 1.56 16 43 H 0.05 0.97 8.13 -2.39 -0.02 0.96 16 44 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.40 4.11 9.12 -74.06 -0.68 3.44 16 Total: -1.00 -66.78 362.64 -1.55 -68.33 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: 0.34 Total: 36.97 kcal Atomic # 6 Polarization: -78.09 SS G_CDS: 3.92 Total: -74.16 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -1.60 Total: -78.40 kcal Atomic # 8 Polarization: -113.35 SS G_CDS: -5.95 Total: -119.29 kcal Atomic # 14 Polarization: 34.67 SS G_CDS: 2.03 Total: 36.70 kcal Atomic # 16 Polarization: 130.15 SS G_CDS: -0.30 Total: 129.85 kcal Total: -66.78 -1.55 -68.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601470342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.671 kcal (2) G-P(sol) polarization free energy of solvation -66.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds