Wall clock time and date at job start Tue Mar 31 2020 23:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 110.88485 * 2 1 4 4 C 1.54906 * 111.00119 * 236.12242 * 2 1 3 5 5 N 1.47426 * 104.82971 * 278.93167 * 4 2 1 6 6 S 1.65603 * 125.64099 * 155.91087 * 5 4 2 7 7 O 1.42107 * 106.39567 * 203.51550 * 6 5 4 8 8 O 1.42098 * 106.40594 * 336.43625 * 6 5 4 9 9 C 1.76202 * 107.21841 * 89.98000 * 6 5 4 10 10 C 1.37635 * 120.12824 * 114.72116 * 9 6 5 11 11 C 1.38621 * 120.24664 * 179.69634 * 10 9 6 12 12 C 1.38660 * 120.49669 * 0.60111 * 11 10 9 13 13 C 1.37594 * 120.25171 * 359.67744 * 12 11 10 14 14 C 1.40696 * 120.12554 * 294.99274 * 9 6 5 15 15 C 1.41398 * 120.24280 * 0.02562 * 14 9 6 16 16 H 1.07993 * 120.00341 * 332.54010 * 15 14 9 17 17 C 1.39951 * 119.99968 * 152.53847 * 15 14 9 18 18 N 1.30832 * 119.99659 * 345.26558 * 17 15 14 19 19 Si 1.86793 * 120.00258 * 165.26403 * 17 15 14 20 20 H 1.48500 * 109.46916 * 90.00082 * 19 17 15 21 21 H 1.48494 * 109.47343 * 210.00017 * 19 17 15 22 22 H 1.48492 * 109.47250 * 330.00188 * 19 17 15 23 23 C 1.47015 * 108.70425 * 335.87415 * 5 4 2 24 24 C 1.54317 * 107.27321 * 1.06075 * 23 5 4 25 25 C 1.53008 * 110.71629 * 263.82734 * 24 23 5 26 26 C 1.53002 * 110.72380 * 140.55746 * 24 23 5 27 27 O 1.42901 * 109.47139 * 66.47314 * 26 24 23 28 28 H 1.08997 * 109.47128 * 182.42913 * 1 2 3 29 29 H 1.08998 * 109.47079 * 62.41781 * 1 2 3 30 30 H 1.09000 * 109.46645 * 302.42747 * 1 2 3 31 31 H 1.08993 * 110.37068 * 37.77842 * 4 2 1 32 32 H 1.09009 * 110.36489 * 160.09907 * 4 2 1 33 33 H 1.08003 * 119.87755 * 0.02562 * 10 9 6 34 34 H 1.08002 * 119.74945 * 180.30291 * 11 10 9 35 35 H 1.07998 * 119.87022 * 179.70108 * 12 11 10 36 36 H 1.07994 * 120.12593 * 180.02562 * 13 12 11 37 37 H 0.96998 * 119.99481 * 179.97438 * 18 17 15 38 38 H 1.09003 * 109.87859 * 120.48053 * 23 5 4 39 39 H 1.09001 * 109.87963 * 241.48635 * 23 5 4 40 40 H 1.09003 * 109.46762 * 173.52114 * 25 24 23 41 41 H 1.08998 * 109.47597 * 293.51700 * 25 24 23 42 42 H 1.08998 * 109.47334 * 53.52534 * 25 24 23 43 43 H 1.08994 * 109.47212 * 186.47305 * 26 24 23 44 44 H 1.08998 * 109.46261 * 306.47667 * 26 24 23 45 45 H 0.96698 * 113.99965 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8061 -1.2006 5 7 2.0139 -2.2155 -0.7742 6 16 1.9318 -3.5261 -1.7832 7 8 1.3388 -4.5754 -1.0304 8 8 1.3978 -3.0535 -3.0123 9 6 3.5865 -4.0292 -2.1203 10 6 4.0389 -5.2534 -1.6832 11 6 5.3383 -5.6544 -1.9525 12 6 6.2001 -4.8241 -2.6529 13 6 5.7710 -3.5936 -3.0946 14 6 4.4520 -3.1787 -2.8324 15 6 4.0001 -1.9162 -3.2809 16 1 2.9521 -1.7609 -3.4902 17 6 4.9109 -0.8679 -3.4536 18 7 6.1104 -0.9519 -2.9380 19 14 4.4142 0.6513 -4.4203 20 1 3.8181 1.6515 -3.4986 21 1 5.6121 1.2345 -5.0759 22 1 3.4174 0.2757 -5.4549 23 6 2.0285 -2.2648 0.6951 24 6 2.0861 -0.8084 1.2019 25 6 3.5280 -0.3988 1.5091 26 6 1.1965 -0.6282 2.4336 27 8 1.7322 -1.3826 3.5226 28 1 -0.3633 -1.0267 0.0436 29 1 -0.3633 0.4758 -0.9109 30 1 -0.3632 0.5511 0.8674 31 1 1.4672 -0.6452 -2.0839 32 1 3.1183 -0.5228 -1.4027 33 1 3.3775 -5.9063 -1.1330 34 1 5.6834 -6.6187 -1.6099 35 1 7.2118 -5.1447 -2.8529 36 1 6.4438 -2.9488 -3.6403 37 1 6.7419 -0.2254 -3.0581 38 1 1.1219 -2.7484 1.0588 39 1 2.9049 -2.8143 1.0388 40 1 3.5597 0.6629 1.7540 41 1 3.8979 -0.9780 2.3551 42 1 4.1535 -0.5893 0.6370 43 1 1.1613 0.4268 2.7051 44 1 0.1895 -0.9794 2.2088 45 1 1.2176 -1.3153 4.3385 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601470343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:30 Heat of formation + Delta-G solvation = -112.390556 kcal Electronic energy + Delta-G solvation = -29740.946097 eV Core-core repulsion = 25849.622811 eV Total energy + Delta-G solvation = -3891.323286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.56792 -37.57646 -36.37278 -36.23025 -34.86059 -33.93482 -32.42369 -30.91941 -30.21715 -29.53432 -27.43883 -25.62361 -25.22405 -24.79744 -21.62324 -21.23623 -21.09544 -18.69424 -18.21931 -17.69408 -17.30965 -16.91142 -16.07075 -15.45581 -15.25794 -14.74487 -14.69878 -14.33402 -14.09718 -13.72112 -13.33399 -13.18272 -13.07782 -12.80768 -12.75808 -12.25528 -12.10953 -12.05426 -11.88889 -11.69524 -11.65254 -11.49387 -11.25258 -11.21568 -11.12821 -11.11931 -10.74018 -10.59756 -10.53251 -10.42205 -10.22493 -10.19656 -9.87528 -9.86661 -9.44086 -9.20461 -8.23780 -7.98379 -7.60621 -7.08571 -4.77113 1.50556 2.36124 2.71106 2.93652 3.00244 3.09618 3.73737 3.93598 4.17167 4.36277 4.61079 4.73780 4.80127 5.08054 5.24287 5.29789 5.38786 5.40975 5.47491 5.57601 5.69794 5.71488 5.88529 6.00610 6.06275 6.09762 6.13193 6.18879 6.25184 6.29890 6.34334 6.41625 6.45306 6.56845 6.66628 6.75382 6.82620 6.93135 7.04866 7.19643 7.35291 7.53158 7.62192 7.69295 7.82531 7.94664 8.35004 8.50001 8.66616 9.84661 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010228 B = 0.006335 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.001904 B = 4418.932995 C = 5475.046337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.087 0.913 4 C 0.128 3.872 5 N -1.004 6.004 6 S 2.719 3.281 7 O -0.994 6.994 8 O -0.972 6.972 9 C -0.777 4.777 10 C -0.002 4.002 11 C -0.250 4.250 12 C -0.076 4.076 13 C -0.160 4.160 14 C 0.192 3.808 15 C -0.471 4.471 16 H 0.112 0.888 17 C 0.082 3.918 18 N -0.773 5.773 19 Si 0.901 3.099 20 H -0.260 1.260 21 H -0.273 1.273 22 H -0.252 1.252 23 C 0.144 3.856 24 C -0.062 4.062 25 C -0.134 4.134 26 C 0.090 3.910 27 O -0.568 6.568 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.287 0.713 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.045 0.955 44 H 0.051 0.949 45 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.440 6.337 8.034 11.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.105 0.895 4 C 0.003 3.997 5 N -0.840 5.840 6 S 2.819 3.181 7 O -0.985 6.985 8 O -0.962 6.962 9 C -0.873 4.873 10 C -0.022 4.022 11 C -0.270 4.270 12 C -0.095 4.095 13 C -0.179 4.179 14 C 0.187 3.813 15 C -0.499 4.499 16 H 0.130 0.870 17 C -0.139 4.139 18 N -0.396 5.396 19 Si 0.724 3.276 20 H -0.185 1.185 21 H -0.198 1.198 22 H -0.175 1.175 23 C 0.018 3.982 24 C -0.064 4.064 25 C -0.191 4.191 26 C 0.012 3.988 27 O -0.373 6.373 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.140 0.860 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -5.585 5.881 7.245 10.875 hybrid contribution 0.531 0.796 0.079 0.960 sum -5.054 6.677 7.324 11.125 Atomic orbital electron populations 1.21827 0.94769 1.02207 1.01542 1.22463 0.95783 0.98968 0.94466 0.89455 1.22207 1.02211 0.79412 0.95888 1.58468 1.90488 1.19385 1.15653 1.00504 0.74703 0.70854 0.72011 1.93435 1.77221 1.55137 1.72730 1.93468 1.78999 1.80769 1.43008 1.29882 1.25017 1.07881 1.24490 1.20240 0.95002 0.93346 0.93582 1.20486 0.95112 1.00558 1.10877 1.20892 0.97267 0.94663 0.96686 1.21477 0.97557 0.95245 1.03667 1.16995 0.90593 0.89933 0.83754 1.20441 0.97869 0.94238 1.37363 0.86993 1.25985 0.94029 1.00751 0.93162 1.69820 1.05564 1.32584 1.31674 0.86383 0.79889 0.80248 0.81124 1.18501 1.19778 1.17518 1.21522 1.01412 0.95824 0.79406 1.21603 0.96394 0.95512 0.92866 1.21732 0.94338 1.00399 1.02630 1.22247 0.95825 0.94216 0.86467 1.86530 1.55516 1.72721 1.22538 0.92174 0.92162 0.92766 0.90453 0.89683 0.87524 0.88753 0.88886 0.85976 0.90218 0.91948 0.91695 0.93131 0.91754 0.91323 0.93637 0.93111 0.77958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 7.99 37.16 0.30 -1.42 16 2 C -0.10 -1.31 3.03 -88.47 -0.27 -1.58 16 3 H 0.09 1.05 8.04 -51.93 -0.42 0.63 16 4 C 0.13 2.24 4.53 -2.53 -0.01 2.23 16 5 N -1.00 -19.35 3.65 -111.43 -0.41 -19.75 16 6 S 2.72 61.80 5.30 -107.50 -0.57 61.23 16 7 O -0.99 -23.54 16.55 -57.17 -0.95 -24.49 16 8 O -0.97 -23.84 15.01 -57.17 -0.86 -24.70 16 9 C -0.78 -19.08 5.96 -38.87 -0.23 -19.32 16 10 C 0.00 -0.04 9.54 -39.66 -0.38 -0.42 16 11 C -0.25 -5.62 10.05 -39.28 -0.39 -6.01 16 12 C -0.08 -1.74 10.02 -39.66 -0.40 -2.14 16 13 C -0.16 -3.97 8.67 -38.87 -0.34 -4.31 16 14 C 0.19 4.89 5.55 -106.82 -0.59 4.30 16 15 C -0.47 -11.50 6.11 -37.74 -0.23 -11.73 16 16 H 0.11 2.75 4.61 -52.49 -0.24 2.51 16 17 C 0.08 1.86 4.86 -17.34 -0.08 1.78 16 18 N -0.77 -17.80 10.98 55.55 0.61 -17.19 16 19 Si 0.90 17.10 29.58 -169.99 -5.03 12.07 16 20 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 21 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 22 H -0.25 -4.93 7.11 56.52 0.40 -4.53 16 23 C 0.14 2.46 5.63 -3.07 -0.02 2.44 16 24 C -0.06 -0.87 0.59 -152.67 -0.09 -0.95 16 25 C -0.13 -1.92 8.27 37.16 0.31 -1.61 16 26 C 0.09 1.00 4.88 37.16 0.18 1.18 16 27 O -0.57 -6.45 12.74 -35.23 -0.45 -6.90 16 28 H 0.06 0.77 7.67 -51.93 -0.40 0.37 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.51 7.18 -51.93 -0.37 0.13 16 31 H 0.08 1.36 7.59 -51.93 -0.39 0.96 16 32 H 0.09 1.61 6.25 -51.92 -0.32 1.29 16 33 H 0.11 2.34 7.32 -52.48 -0.38 1.96 16 34 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 36 H 0.12 3.04 6.27 -52.49 -0.33 2.71 16 37 H 0.29 5.97 8.30 -40.82 -0.34 5.63 16 38 H 0.06 1.03 7.77 -51.93 -0.40 0.63 16 39 H 0.06 1.18 7.85 -51.93 -0.41 0.77 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.94 7.59 -51.93 -0.39 0.55 16 42 H 0.07 1.14 7.57 -51.93 -0.39 0.74 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.05 0.53 6.69 -51.93 -0.35 0.18 16 45 H 0.37 2.43 9.12 45.56 0.42 2.84 16 LS Contribution 361.18 15.07 5.44 5.44 Total: -1.00 -29.94 361.18 -10.09 -40.04 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -5.64 Total: 11.80 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: -2.25 Total: -37.56 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.20 Total: -36.95 kcal Atomic # 8 Polarization: -53.83 SS G_CDS: -2.25 Total: -56.08 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Atomic # 16 Polarization: 61.80 SS G_CDS: -0.57 Total: 61.23 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.94 -10.09 -40.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601470343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.352 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds