Wall clock time and date at job start Tue Mar 31 2020 23:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 110.88485 * 2 1 4 4 C 1.54906 * 111.00119 * 236.12242 * 2 1 3 5 5 N 1.47426 * 104.82971 * 278.93167 * 4 2 1 6 6 S 1.65603 * 125.64099 * 155.91087 * 5 4 2 7 7 O 1.42107 * 106.39567 * 203.51550 * 6 5 4 8 8 O 1.42098 * 106.40594 * 336.43625 * 6 5 4 9 9 C 1.76202 * 107.21841 * 89.98000 * 6 5 4 10 10 C 1.37635 * 120.12824 * 114.72116 * 9 6 5 11 11 C 1.38621 * 120.24664 * 179.69634 * 10 9 6 12 12 C 1.38660 * 120.49669 * 0.60111 * 11 10 9 13 13 C 1.37594 * 120.25171 * 359.67744 * 12 11 10 14 14 C 1.40696 * 120.12554 * 294.99274 * 9 6 5 15 15 C 1.41398 * 120.24280 * 0.02562 * 14 9 6 16 16 H 1.07993 * 120.00341 * 332.54010 * 15 14 9 17 17 C 1.39951 * 119.99968 * 152.53847 * 15 14 9 18 18 N 1.30832 * 119.99659 * 345.26558 * 17 15 14 19 19 Si 1.86793 * 120.00258 * 165.26403 * 17 15 14 20 20 H 1.48500 * 109.46916 * 90.00082 * 19 17 15 21 21 H 1.48494 * 109.47343 * 210.00017 * 19 17 15 22 22 H 1.48492 * 109.47250 * 330.00188 * 19 17 15 23 23 C 1.47015 * 108.70425 * 335.87415 * 5 4 2 24 24 C 1.54317 * 107.27321 * 1.06075 * 23 5 4 25 25 C 1.53008 * 110.71629 * 263.82734 * 24 23 5 26 26 C 1.53002 * 110.72380 * 140.55746 * 24 23 5 27 27 O 1.42901 * 109.47139 * 66.47314 * 26 24 23 28 28 H 1.08997 * 109.47128 * 182.42913 * 1 2 3 29 29 H 1.08998 * 109.47079 * 62.41781 * 1 2 3 30 30 H 1.09000 * 109.46645 * 302.42747 * 1 2 3 31 31 H 1.08993 * 110.37068 * 37.77842 * 4 2 1 32 32 H 1.09009 * 110.36489 * 160.09907 * 4 2 1 33 33 H 1.08003 * 119.87755 * 0.02562 * 10 9 6 34 34 H 1.08002 * 119.74945 * 180.30291 * 11 10 9 35 35 H 1.07998 * 119.87022 * 179.70108 * 12 11 10 36 36 H 1.07994 * 120.12593 * 180.02562 * 13 12 11 37 37 H 0.96998 * 119.99481 * 179.97438 * 18 17 15 38 38 H 1.09003 * 109.87859 * 120.48053 * 23 5 4 39 39 H 1.09001 * 109.87963 * 241.48635 * 23 5 4 40 40 H 1.09003 * 109.46762 * 173.52114 * 25 24 23 41 41 H 1.08998 * 109.47597 * 293.51700 * 25 24 23 42 42 H 1.08998 * 109.47334 * 53.52534 * 25 24 23 43 43 H 1.08994 * 109.47212 * 186.47305 * 26 24 23 44 44 H 1.08998 * 109.46261 * 306.47667 * 26 24 23 45 45 H 0.96698 * 113.99965 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8061 -1.2006 5 7 2.0139 -2.2155 -0.7742 6 16 1.9318 -3.5261 -1.7832 7 8 1.3388 -4.5754 -1.0304 8 8 1.3978 -3.0535 -3.0123 9 6 3.5865 -4.0292 -2.1203 10 6 4.0389 -5.2534 -1.6832 11 6 5.3383 -5.6544 -1.9525 12 6 6.2001 -4.8241 -2.6529 13 6 5.7710 -3.5936 -3.0946 14 6 4.4520 -3.1787 -2.8324 15 6 4.0001 -1.9162 -3.2809 16 1 2.9521 -1.7609 -3.4902 17 6 4.9109 -0.8679 -3.4536 18 7 6.1104 -0.9519 -2.9380 19 14 4.4142 0.6513 -4.4203 20 1 3.8181 1.6515 -3.4986 21 1 5.6121 1.2345 -5.0759 22 1 3.4174 0.2757 -5.4549 23 6 2.0285 -2.2648 0.6951 24 6 2.0861 -0.8084 1.2019 25 6 3.5280 -0.3988 1.5091 26 6 1.1965 -0.6282 2.4336 27 8 1.7322 -1.3826 3.5226 28 1 -0.3633 -1.0267 0.0436 29 1 -0.3633 0.4758 -0.9109 30 1 -0.3632 0.5511 0.8674 31 1 1.4672 -0.6452 -2.0839 32 1 3.1183 -0.5228 -1.4027 33 1 3.3775 -5.9063 -1.1330 34 1 5.6834 -6.6187 -1.6099 35 1 7.2118 -5.1447 -2.8529 36 1 6.4438 -2.9488 -3.6403 37 1 6.7419 -0.2254 -3.0581 38 1 1.1219 -2.7484 1.0588 39 1 2.9049 -2.8143 1.0388 40 1 3.5597 0.6629 1.7540 41 1 3.8979 -0.9780 2.3551 42 1 4.1535 -0.5893 0.6370 43 1 1.1613 0.4268 2.7051 44 1 0.1895 -0.9794 2.2088 45 1 1.2176 -1.3153 4.3385 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601470343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:29 Heat of formation + Delta-G solvation = -133.428833 kcal Electronic energy + Delta-G solvation = -29741.858385 eV Core-core repulsion = 25849.622811 eV Total energy + Delta-G solvation = -3892.235574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.74698 -39.39388 -38.15424 -37.24895 -36.74549 -35.71043 -33.72024 -32.04133 -32.01487 -31.37191 -28.63320 -27.34882 -26.32895 -26.06383 -23.43839 -22.96655 -22.43266 -19.92189 -19.80935 -19.46422 -18.70833 -18.11922 -17.79357 -17.15142 -16.68924 -16.34830 -16.02226 -15.76215 -15.29683 -15.18948 -14.98835 -14.73689 -14.47022 -14.25367 -14.04617 -13.75378 -13.48457 -13.43563 -13.20362 -13.13113 -13.04506 -13.01747 -13.00301 -12.91238 -12.83067 -12.68940 -12.39373 -12.18670 -11.90502 -11.67591 -11.63570 -11.33898 -11.29606 -11.12786 -11.01783 -10.70993 -9.90488 -9.69655 -9.46819 -8.82127 -6.61721 -0.25100 0.52301 0.95318 1.37124 1.45973 1.52750 2.15489 2.27282 2.59521 2.96485 3.20859 3.43377 3.54251 3.58958 3.83617 4.10348 4.24235 4.27979 4.33444 4.38875 4.46451 4.57845 4.62588 4.66765 4.67951 4.72982 4.82874 4.94435 4.96288 5.02774 5.08075 5.13596 5.14894 5.17950 5.24990 5.27752 5.33008 5.45856 5.51668 5.55012 5.64352 5.71873 5.84109 5.97941 6.11465 6.49638 6.68215 6.81945 7.05859 8.14100 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010228 B = 0.006335 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.001904 B = 4418.932995 C = 5475.046337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 H 0.112 0.888 4 C 0.119 3.881 5 N -1.001 6.001 6 S 2.733 3.267 7 O -1.009 7.009 8 O -0.996 6.996 9 C -0.803 4.803 10 C -0.018 4.018 11 C -0.254 4.254 12 C -0.076 4.076 13 C -0.186 4.186 14 C 0.165 3.835 15 C -0.487 4.487 16 H 0.104 0.896 17 C 0.055 3.945 18 N -0.793 5.793 19 Si 0.955 3.045 20 H -0.237 1.237 21 H -0.261 1.261 22 H -0.264 1.264 23 C 0.137 3.863 24 C -0.058 4.058 25 C -0.128 4.128 26 C 0.095 3.905 27 O -0.590 6.590 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.116 0.884 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.297 0.703 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.035 0.965 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.078 8.449 9.386 14.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 H 0.130 0.870 4 C -0.006 4.006 5 N -0.839 5.839 6 S 2.832 3.168 7 O -1.000 7.000 8 O -0.986 6.986 9 C -0.897 4.897 10 C -0.038 4.038 11 C -0.274 4.274 12 C -0.095 4.095 13 C -0.206 4.206 14 C 0.160 3.840 15 C -0.514 4.514 16 H 0.122 0.878 17 C -0.166 4.166 18 N -0.416 5.416 19 Si 0.774 3.226 20 H -0.160 1.160 21 H -0.185 1.185 22 H -0.188 1.188 23 C 0.012 3.988 24 C -0.060 4.060 25 C -0.185 4.185 26 C 0.017 3.983 27 O -0.399 6.399 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.134 0.866 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.133 0.867 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.055 0.945 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -6.211 7.973 8.621 13.284 hybrid contribution 0.786 0.084 -0.291 0.843 sum -5.425 8.057 8.330 12.796 Atomic orbital electron populations 1.21854 0.93026 1.01938 1.03442 1.22473 0.97132 0.99158 0.91780 0.87018 1.22348 1.01410 0.78941 0.97885 1.58205 1.89982 1.19322 1.16403 0.99910 0.74018 0.71111 0.71769 1.93399 1.77383 1.56307 1.72889 1.93423 1.79352 1.81236 1.44625 1.30210 1.25848 1.08598 1.25015 1.20541 0.95985 0.93375 0.93892 1.20861 0.94612 1.01725 1.10214 1.21231 0.98696 0.93875 0.95709 1.21550 0.97613 0.96362 1.05056 1.17321 0.91280 0.90824 0.84548 1.20499 0.97924 0.94728 1.38280 0.87848 1.26638 0.93708 1.02848 0.93367 1.69831 1.06273 1.33781 1.31684 0.85584 0.79720 0.77454 0.79839 1.16013 1.18536 1.18776 1.21742 1.00641 0.98475 0.77986 1.21630 0.96914 0.92874 0.94597 1.21661 0.94165 1.01889 1.00812 1.22204 0.95085 0.95896 0.85099 1.86478 1.56585 1.73054 1.23735 0.93691 0.91648 0.89390 0.91033 0.91623 0.86571 0.85638 0.85932 0.86728 0.89175 0.91494 0.93743 0.90574 0.92486 0.94542 0.90721 0.92054 0.75431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 7.99 71.98 0.58 -2.40 16 2 C -0.09 -2.12 3.03 -9.40 -0.03 -2.15 16 3 H 0.11 2.28 8.04 -2.38 -0.02 2.26 16 4 C 0.12 4.18 4.53 86.85 0.39 4.57 16 5 N -1.00 -39.49 3.65 -506.45 -1.85 -41.34 16 6 S 2.73 128.68 5.30 -56.49 -0.30 128.38 16 7 O -1.01 -49.08 16.55 -128.00 -2.12 -51.20 16 8 O -1.00 -50.71 15.01 -128.00 -1.92 -52.63 16 9 C -0.80 -40.89 5.96 22.73 0.14 -40.76 16 10 C -0.02 -0.87 9.54 22.22 0.21 -0.66 16 11 C -0.25 -11.36 10.05 22.46 0.23 -11.14 16 12 C -0.08 -3.49 10.02 22.22 0.22 -3.27 16 13 C -0.19 -9.50 8.67 22.73 0.20 -9.30 16 14 C 0.16 8.72 5.55 -21.29 -0.12 8.60 16 15 C -0.49 -24.58 6.11 23.46 0.14 -24.44 16 16 H 0.10 5.30 4.61 -2.91 -0.01 5.29 16 17 C 0.05 2.50 4.86 85.26 0.41 2.91 16 18 N -0.79 -36.94 10.98 21.83 0.24 -36.70 16 19 Si 0.95 34.57 29.58 68.60 2.03 36.60 16 20 H -0.24 -7.65 7.11 99.48 0.71 -6.94 16 21 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 22 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 23 C 0.14 4.70 5.63 86.73 0.49 5.19 16 24 C -0.06 -1.53 0.59 -50.99 -0.03 -1.56 16 25 C -0.13 -3.53 8.27 71.98 0.60 -2.93 16 26 C 0.09 1.78 4.88 71.98 0.35 2.13 16 27 O -0.59 -11.86 12.74 -148.98 -1.90 -13.76 16 28 H 0.04 1.06 7.67 -2.39 -0.02 1.04 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.09 1.23 7.18 -2.39 -0.02 1.21 16 31 H 0.07 2.55 7.59 -2.39 -0.02 2.53 16 32 H 0.07 2.55 6.25 -2.38 -0.01 2.53 16 33 H 0.12 5.21 7.32 -2.91 -0.02 5.19 16 34 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 35 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 36 H 0.11 5.89 6.27 -2.91 -0.02 5.87 16 37 H 0.30 12.33 8.30 -92.71 -0.77 11.56 16 38 H 0.07 2.20 7.77 -2.39 -0.02 2.19 16 39 H 0.04 1.67 7.85 -2.39 -0.02 1.66 16 40 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.06 1.63 7.59 -2.39 -0.02 1.61 16 42 H 0.04 1.22 7.57 -2.39 -0.02 1.20 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.06 1.04 6.69 -2.39 -0.02 1.02 16 45 H 0.40 3.93 9.12 -74.06 -0.68 3.25 16 Total: -1.00 -66.87 361.18 -1.70 -68.57 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: 0.34 Total: 37.28 kcal Atomic # 6 Polarization: -78.99 SS G_CDS: 3.78 Total: -75.21 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -1.61 Total: -78.04 kcal Atomic # 8 Polarization: -111.65 SS G_CDS: -5.94 Total: -117.59 kcal Atomic # 14 Polarization: 34.57 SS G_CDS: 2.03 Total: 36.60 kcal Atomic # 16 Polarization: 128.68 SS G_CDS: -0.30 Total: 128.38 kcal Total: -66.87 -1.70 -68.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601470343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.855 kcal (2) G-P(sol) polarization free energy of solvation -66.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds