Wall clock time and date at job start Tue Mar 31 2020 23:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.91324 * 2 1 4 4 C 1.54906 * 111.00797 * 123.89873 * 2 1 3 5 5 N 1.47427 * 104.82925 * 81.06740 * 4 2 1 6 6 S 1.65600 * 125.64648 * 204.16888 * 5 4 2 7 7 O 1.42097 * 106.40591 * 29.74227 * 6 5 4 8 8 O 1.42102 * 106.40456 * 162.66729 * 6 5 4 9 9 C 1.76203 * 107.21705 * 276.20206 * 6 5 4 10 10 C 1.37638 * 120.12768 * 114.59859 * 9 6 5 11 11 C 1.38620 * 120.24593 * 179.97438 * 10 9 6 12 12 C 1.38656 * 120.50211 * 0.02562 * 11 10 9 13 13 C 1.37593 * 120.24712 * 0.02562 * 12 11 10 14 14 C 1.40696 * 120.12822 * 294.32891 * 9 6 5 15 15 C 1.41399 * 120.24465 * 359.97438 * 14 9 6 16 16 H 1.08000 * 119.99631 * 332.01497 * 15 14 9 17 17 C 1.39946 * 120.00118 * 152.01311 * 15 14 9 18 18 N 1.30821 * 120.00097 * 344.69585 * 17 15 14 19 19 Si 1.86797 * 119.99949 * 164.69780 * 17 15 14 20 20 H 1.48506 * 109.47433 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47301 * 119.99976 * 19 17 15 22 22 H 1.48499 * 109.47316 * 240.00213 * 19 17 15 23 23 C 1.47021 * 108.70424 * 24.12740 * 5 4 2 24 24 C 1.54323 * 107.26922 * 358.94268 * 23 5 4 25 25 C 1.53003 * 110.71965 * 96.16874 * 24 23 5 26 26 C 1.53002 * 110.71823 * 219.44006 * 24 23 5 27 27 O 1.42897 * 109.46967 * 298.54635 * 26 24 23 28 28 H 1.09000 * 109.46613 * 183.89930 * 1 2 3 29 29 H 1.08996 * 109.47058 * 303.90211 * 1 2 3 30 30 H 1.08996 * 109.47072 * 63.90506 * 1 2 3 31 31 H 1.09007 * 110.36806 * 322.23024 * 4 2 1 32 32 H 1.08990 * 110.46640 * 199.95333 * 4 2 1 33 33 H 1.08001 * 119.87993 * 0.02562 * 10 9 6 34 34 H 1.07998 * 119.74472 * 180.02562 * 11 10 9 35 35 H 1.08004 * 119.87174 * 180.02562 * 12 11 10 36 36 H 1.08006 * 120.12532 * 179.97438 * 13 12 11 37 37 H 0.97003 * 120.00172 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.88656 * 239.52249 * 23 5 4 39 39 H 1.09003 * 109.87824 * 118.35981 * 23 5 4 40 40 H 1.09003 * 109.46944 * 61.45045 * 25 24 23 41 41 H 1.09004 * 109.47235 * 181.45110 * 25 24 23 42 42 H 1.08999 * 109.46803 * 301.45355 * 25 24 23 43 43 H 1.08997 * 109.46746 * 58.54799 * 26 24 23 44 44 H 1.09003 * 109.47085 * 178.54730 * 26 24 23 45 45 H 0.96706 * 113.99784 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0854 -0.8065 1.2003 5 7 2.0141 -2.2158 0.7733 6 16 1.9303 -3.5267 1.7817 7 8 1.2623 -3.0874 2.9564 8 8 1.4743 -4.6143 0.9890 9 6 3.5788 -3.9197 2.2642 10 6 3.9635 -3.7889 3.5793 11 6 5.2596 -4.0979 3.9617 12 6 6.1825 -4.5410 3.0266 13 6 5.8203 -4.6782 1.7063 14 6 4.5053 -4.3738 1.3078 15 6 4.1198 -4.5180 -0.0450 16 1 3.0899 -4.7278 -0.2935 17 6 5.0726 -4.3887 -1.0618 18 7 6.2355 -3.8481 -0.8036 19 14 4.6839 -4.9882 -2.7877 20 1 3.3121 -5.5563 -2.8173 21 1 4.7694 -3.8502 -3.7380 22 1 5.6612 -6.0352 -3.1800 23 6 2.0286 -2.2646 -0.6960 24 6 2.0862 -0.8078 -1.2022 25 6 3.5280 -0.3981 -1.5092 26 6 1.1965 -0.6272 -2.4338 27 8 1.6647 -1.4713 -3.4875 28 1 -0.3632 -1.0253 0.0699 29 1 -0.3633 0.5732 0.8529 30 1 -0.3633 0.4520 -0.9229 31 1 1.4673 -0.6461 2.0837 32 1 3.1180 -0.5238 1.4043 33 1 3.2527 -3.4451 4.3161 34 1 5.5526 -3.9928 4.9958 35 1 7.1895 -4.7793 3.3358 36 1 6.5409 -5.0230 0.9795 37 1 6.8961 -3.7588 -1.5083 38 1 1.1220 -2.7479 -1.0600 39 1 2.9065 -2.8116 -1.0400 40 1 3.9278 -1.0378 -2.2961 41 1 3.5480 0.6404 -1.8400 42 1 4.1353 -0.5049 -0.6104 43 1 0.1701 -0.8946 -2.1829 44 1 1.2321 0.4128 -2.7583 45 1 1.1462 -1.4088 -4.3014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601470356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:37 Heat of formation + Delta-G solvation = -131.874689 kcal Electronic energy + Delta-G solvation = -29955.560024 eV Core-core repulsion = 26063.391842 eV Total energy + Delta-G solvation = -3892.168181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.73097 -39.39121 -38.14102 -37.25694 -36.73764 -35.71671 -33.72451 -32.10502 -31.92269 -31.37246 -28.61502 -27.37977 -26.30012 -26.06004 -23.44823 -22.97417 -22.40542 -19.90787 -19.80960 -19.48667 -18.67527 -18.09386 -17.78504 -17.21589 -16.61130 -16.39189 -15.99250 -15.79171 -15.30801 -15.22669 -14.92245 -14.81288 -14.49414 -14.16626 -14.02218 -13.73128 -13.50710 -13.33669 -13.24535 -13.14699 -13.05100 -13.00254 -12.98747 -12.92142 -12.85287 -12.72911 -12.36427 -12.18829 -11.91464 -11.66955 -11.61203 -11.32712 -11.27425 -11.11133 -11.00188 -10.69937 -9.88525 -9.68557 -9.45839 -8.84532 -6.61635 -0.24130 0.52407 0.94770 1.34110 1.44248 1.48580 2.14693 2.28863 2.58300 2.97080 3.23210 3.45469 3.49219 3.65208 3.85282 4.13797 4.22188 4.29683 4.33060 4.41182 4.47664 4.58041 4.63979 4.67279 4.69148 4.80245 4.82705 4.96371 4.96743 4.99584 5.06361 5.13625 5.14414 5.22612 5.26196 5.28834 5.36760 5.49110 5.52735 5.55489 5.65736 5.73167 5.85051 5.98569 6.11930 6.50272 6.68475 6.81831 7.05562 8.11834 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.007314 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.702556 B = 3827.574420 C = 5450.028293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 H 0.120 0.880 4 C 0.113 3.887 5 N -1.001 6.001 6 S 2.732 3.268 7 O -1.005 7.005 8 O -1.002 7.002 9 C -0.800 4.800 10 C -0.016 4.016 11 C -0.251 4.251 12 C -0.075 4.075 13 C -0.186 4.186 14 C 0.166 3.834 15 C -0.487 4.487 16 H 0.099 0.901 17 C 0.061 3.939 18 N -0.788 5.788 19 Si 0.950 3.050 20 H -0.263 1.263 21 H -0.251 1.251 22 H -0.258 1.258 23 C 0.129 3.871 24 C -0.064 4.064 25 C -0.123 4.123 26 C 0.091 3.909 27 O -0.593 6.593 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.296 0.704 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.079 0.921 42 H 0.040 0.960 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.847 11.092 -5.570 13.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.096 4.096 3 H 0.138 0.862 4 C -0.012 4.012 5 N -0.840 5.840 6 S 2.831 3.169 7 O -0.996 6.996 8 O -0.992 6.992 9 C -0.894 4.894 10 C -0.036 4.036 11 C -0.271 4.271 12 C -0.094 4.094 13 C -0.205 4.205 14 C 0.161 3.839 15 C -0.514 4.514 16 H 0.117 0.883 17 C -0.160 4.160 18 N -0.411 5.411 19 Si 0.770 3.230 20 H -0.187 1.187 21 H -0.175 1.175 22 H -0.183 1.183 23 C 0.004 3.996 24 C -0.066 4.066 25 C -0.181 4.181 26 C 0.013 3.987 27 O -0.401 6.401 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.138 0.862 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -5.986 10.513 -4.923 13.061 hybrid contribution 0.714 -0.621 -0.782 1.228 sum -5.272 9.892 -5.706 12.578 Atomic orbital electron populations 1.21868 0.93224 1.01651 1.03631 1.22374 0.96906 0.99211 0.91149 0.86223 1.22273 1.00987 0.79128 0.98799 1.58202 1.90001 1.19109 1.16652 0.99917 0.74020 0.71727 0.71230 1.93399 1.74419 1.82646 1.49087 1.93421 1.81817 1.53392 1.70614 1.30195 1.25031 1.31252 1.02938 1.20554 0.96389 0.93277 0.93375 1.20876 0.94039 1.12780 0.99453 1.21234 0.98708 0.96123 0.93301 1.21511 0.97585 1.06045 0.95405 1.17294 0.91240 0.83607 0.91742 1.20463 0.98280 1.41751 0.90909 0.88280 1.26468 0.93567 0.91486 1.04450 1.69810 1.05987 1.28216 1.37126 0.85614 0.80079 0.79922 0.77393 1.18695 1.17461 1.18264 1.21959 1.01306 0.98405 0.77907 1.21702 0.96729 0.93294 0.94870 1.21626 0.94229 1.01492 1.00728 1.22309 0.95972 0.94451 0.85952 1.86534 1.59989 1.67409 1.26172 0.94332 0.90890 0.89662 0.89875 0.92102 0.86207 0.85432 0.85870 0.86958 0.89269 0.93048 0.91721 0.94020 0.90175 0.94051 0.92008 0.90488 0.75605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.10 71.98 0.58 -2.28 16 2 C -0.08 -1.76 3.03 -9.40 -0.03 -1.79 16 3 H 0.12 2.04 8.04 -2.39 -0.02 2.02 16 4 C 0.11 3.53 6.28 86.85 0.55 4.08 16 5 N -1.00 -39.56 3.64 -506.43 -1.84 -41.41 16 6 S 2.73 128.72 5.28 -56.49 -0.30 128.42 16 7 O -1.00 -47.60 16.40 -128.00 -2.10 -49.70 16 8 O -1.00 -52.64 15.14 -128.00 -1.94 -54.58 16 9 C -0.80 -40.42 5.97 22.73 0.14 -40.28 16 10 C -0.02 -0.76 9.54 22.22 0.21 -0.55 16 11 C -0.25 -10.94 10.05 22.46 0.23 -10.72 16 12 C -0.08 -3.38 10.02 22.22 0.22 -3.15 16 13 C -0.19 -9.48 8.67 22.73 0.20 -9.28 16 14 C 0.17 8.85 5.54 -21.29 -0.12 8.73 16 15 C -0.49 -25.55 6.10 23.46 0.14 -25.41 16 16 H 0.10 5.42 4.69 -2.91 -0.01 5.41 16 17 C 0.06 2.93 4.86 85.26 0.41 3.35 16 18 N -0.79 -37.87 11.03 21.83 0.24 -37.63 16 19 Si 0.95 38.06 29.59 68.60 2.03 40.09 16 20 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 21 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 22 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 23 C 0.13 4.89 4.92 86.73 0.43 5.31 16 24 C -0.06 -1.77 0.58 -50.99 -0.03 -1.80 16 25 C -0.12 -3.61 8.28 71.98 0.60 -3.01 16 26 C 0.09 1.91 4.98 71.98 0.36 2.27 16 27 O -0.59 -14.38 12.91 -148.98 -1.92 -16.31 16 28 H 0.04 0.93 7.91 -2.39 -0.02 0.91 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.19 6.66 -2.39 -0.02 1.18 16 31 H 0.08 2.47 7.73 -2.38 -0.02 2.45 16 32 H 0.06 1.93 7.72 -2.39 -0.02 1.91 16 33 H 0.12 5.15 7.32 -2.91 -0.02 5.13 16 34 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 35 H 0.12 4.68 8.06 -2.91 -0.02 4.65 16 36 H 0.11 5.81 6.31 -2.91 -0.02 5.79 16 37 H 0.30 12.73 8.30 -92.71 -0.77 11.96 16 38 H 0.05 1.95 7.82 -2.39 -0.02 1.94 16 39 H 0.06 2.86 4.98 -2.39 -0.01 2.84 16 40 H 0.04 1.40 7.87 -2.39 -0.02 1.38 16 41 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.04 1.37 7.45 -2.39 -0.02 1.35 16 43 H 0.06 1.17 6.41 -2.39 -0.02 1.15 16 44 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.39 5.39 9.12 -74.05 -0.68 4.71 16 Total: -1.00 -68.72 361.09 -1.60 -70.32 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: 0.34 Total: 35.33 kcal Atomic # 6 Polarization: -78.42 SS G_CDS: 3.88 Total: -74.53 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -1.60 Total: -79.03 kcal Atomic # 8 Polarization: -114.63 SS G_CDS: -5.96 Total: -120.59 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Atomic # 16 Polarization: 128.72 SS G_CDS: -0.30 Total: 128.42 kcal Total: -68.72 -1.60 -70.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601470356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.556 kcal (2) G-P(sol) polarization free energy of solvation -68.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds