Wall clock time and date at job start Tue Mar 31 2020 23:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.46318 * 2 1 4 4 C 1.53041 * 109.46276 * 240.02687 * 2 1 3 5 5 C 1.53186 * 109.31522 * 178.62876 * 4 2 1 6 6 N 1.46923 * 108.77603 * 54.63153 * 5 4 2 7 7 S 1.65610 * 120.63070 * 126.36888 * 6 5 4 8 8 O 1.42102 * 106.39613 * 343.11621 * 7 6 5 9 9 O 1.42098 * 106.40261 * 210.19462 * 7 6 5 10 10 C 1.76197 * 107.21707 * 96.65360 * 7 6 5 11 11 C 1.37643 * 120.12762 * 116.31417 * 10 7 6 12 12 C 1.38617 * 120.24813 * 180.27940 * 11 10 7 13 13 C 1.38656 * 120.49844 * 359.76029 * 12 11 10 14 14 C 1.37600 * 120.25091 * 359.95631 * 13 12 11 15 15 C 1.40701 * 120.12894 * 296.05443 * 10 7 6 16 16 C 1.41395 * 120.24418 * 359.97438 * 15 10 7 17 17 H 1.07995 * 119.99851 * 329.99680 * 16 15 10 18 18 C 1.39945 * 120.00083 * 149.99365 * 16 15 10 19 19 N 1.30819 * 120.00174 * 148.27667 * 18 16 15 20 20 Si 1.86806 * 119.99965 * 328.55421 * 18 16 15 21 21 H 1.48493 * 109.47257 * 265.65527 * 20 18 16 22 22 H 1.48505 * 109.46881 * 25.65441 * 20 18 16 23 23 H 1.48500 * 109.46854 * 145.65488 * 20 18 16 24 24 C 1.46923 * 118.74336 * 306.64474 * 6 5 4 25 25 C 1.52766 * 109.00914 * 53.30659 * 24 6 5 26 26 H 1.08994 * 109.35681 * 65.49637 * 25 24 6 27 27 C 1.52992 * 109.59509 * 185.54051 * 25 24 6 28 28 O 1.42903 * 109.46908 * 294.98150 * 27 25 24 29 29 H 1.08995 * 109.47341 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47366 * 299.97273 * 1 2 3 31 31 H 1.09000 * 109.47325 * 59.97242 * 1 2 3 32 32 H 1.08997 * 109.49730 * 58.67418 * 4 2 1 33 33 H 1.09006 * 109.52035 * 298.59482 * 4 2 1 34 34 H 1.09002 * 109.58652 * 294.84685 * 5 4 2 35 35 H 1.09000 * 109.58732 * 174.42015 * 5 4 2 36 36 H 1.07999 * 119.87277 * 359.97438 * 11 10 7 37 37 H 1.07998 * 119.74536 * 179.73920 * 12 11 10 38 38 H 1.08003 * 119.87136 * 179.97438 * 13 12 11 39 39 H 1.08001 * 120.12292 * 180.02562 * 14 13 12 40 40 H 0.97001 * 120.00525 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.59076 * 173.14046 * 24 6 5 42 42 H 1.09001 * 109.58131 * 293.57139 * 24 6 5 43 43 H 1.09003 * 109.46992 * 54.98203 * 27 25 24 44 44 H 1.08994 * 109.47397 * 174.98327 * 27 25 24 45 45 H 0.96699 * 113.99647 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5713 -0.6890 -1.2640 6 7 4.0675 -1.2492 0.0004 7 16 5.1653 -2.4893 0.0006 8 8 5.1346 -3.0524 -1.3037 9 8 4.9179 -3.2439 1.1790 10 6 6.7626 -1.7717 0.1954 11 6 7.5144 -2.0523 1.3138 12 6 8.7690 -1.4846 1.4723 13 6 9.2832 -0.6330 0.5064 14 6 8.5517 -0.3429 -0.6224 15 6 7.2770 -0.9139 -0.7942 16 6 6.5163 -0.6231 -1.9501 17 1 5.8206 -1.3532 -2.3364 18 6 6.6650 0.6107 -2.5935 19 7 6.5075 0.6958 -3.8894 20 14 7.0960 2.1347 -1.6030 21 1 5.8508 2.8584 -1.2411 22 1 7.8133 1.7344 -0.3658 23 1 7.9665 3.0227 -2.4146 24 6 3.5668 -0.6926 1.2645 25 6 2.0395 -0.7207 1.2503 26 1 1.6973 -1.7555 1.2385 27 6 1.5017 -0.0191 2.4990 28 8 1.8809 -0.7588 3.6614 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5134 0.8902 31 1 -0.3634 0.5143 -0.8897 32 1 1.6574 -0.2209 -2.1398 33 1 1.6976 -1.7558 -1.2387 34 1 3.9145 0.3404 -1.3671 35 1 3.9416 -1.2851 -2.0980 36 1 7.1232 -2.7134 2.0729 37 1 9.3501 -1.7071 2.3550 38 1 10.2617 -0.1959 0.6405 39 1 8.9544 0.3204 -1.3736 40 1 6.6102 1.5511 -4.3354 41 1 3.9341 -1.2910 2.0982 42 1 3.9096 0.3365 1.3717 43 1 1.9165 0.9872 2.5574 44 1 0.4147 0.0386 2.4436 45 1 1.5733 -0.3709 4.4921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601471512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:22 Heat of formation + Delta-G solvation = -115.300192 kcal Electronic energy + Delta-G solvation = -29519.044673 eV Core-core repulsion = 25627.595216 eV Total energy + Delta-G solvation = -3891.449457 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.07370 -37.77095 -36.47958 -36.25056 -34.85904 -33.98522 -33.53472 -31.28673 -30.67225 -29.98650 -27.72530 -25.77686 -25.32332 -22.43926 -21.88738 -21.76340 -21.14320 -19.82044 -18.09277 -17.70043 -17.35044 -17.06885 -16.25426 -15.62696 -15.37984 -14.72879 -14.41767 -14.33487 -14.20430 -13.87891 -13.79044 -13.38577 -13.32987 -13.27797 -12.90123 -12.62826 -12.24740 -12.19677 -11.96108 -11.85244 -11.55187 -11.30574 -11.26578 -11.17515 -11.09998 -11.04392 -10.77642 -10.73481 -10.62391 -10.42314 -10.13667 -10.05580 -9.98834 -9.78317 -9.38611 -9.27668 -8.36632 -8.11435 -7.71194 -7.31004 -4.82911 1.49544 2.17121 2.56359 2.93023 3.02313 3.10279 3.77800 3.84140 4.18340 4.19647 4.71797 4.84123 4.85638 4.99454 5.07433 5.16018 5.35850 5.39251 5.46352 5.56865 5.67752 5.73331 5.78548 5.80761 5.87303 5.90975 5.98219 6.01076 6.12802 6.22527 6.25804 6.28474 6.36278 6.44874 6.51320 6.65101 6.67900 6.77119 6.98547 7.18673 7.23028 7.39268 7.51525 7.62707 7.64541 7.88040 8.13633 8.37673 8.54678 9.66263 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011344 B = 0.005856 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.744352 B = 4780.209886 C = 5674.615706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 H 0.073 0.927 4 C -0.128 4.128 5 C 0.126 3.874 6 N -0.992 5.992 7 S 2.704 3.296 8 O -0.970 6.970 9 O -0.992 6.992 10 C -0.774 4.774 11 C 0.013 3.987 12 C -0.260 4.260 13 C -0.055 4.055 14 C -0.208 4.208 15 C 0.161 3.839 16 C -0.467 4.467 17 H 0.128 0.872 18 C 0.102 3.898 19 N -0.759 5.759 20 Si 0.867 3.133 21 H -0.266 1.266 22 H -0.219 1.219 23 H -0.273 1.273 24 C 0.134 3.866 25 C -0.094 4.094 26 H 0.082 0.918 27 C 0.080 3.920 28 O -0.569 6.569 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.291 0.709 41 H 0.094 0.906 42 H 0.060 0.940 43 H 0.046 0.954 44 H 0.050 0.950 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.435 5.036 7.013 12.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.103 4.103 3 H 0.092 0.908 4 C -0.167 4.167 5 C 0.001 3.999 6 N -0.828 5.828 7 S 2.802 3.198 8 O -0.960 6.960 9 O -0.983 6.983 10 C -0.868 4.868 11 C -0.007 4.007 12 C -0.280 4.280 13 C -0.073 4.073 14 C -0.228 4.228 15 C 0.156 3.844 16 C -0.493 4.493 17 H 0.145 0.855 18 C -0.124 4.124 19 N -0.379 5.379 20 Si 0.689 3.311 21 H -0.191 1.191 22 H -0.141 1.141 23 H -0.198 1.198 24 C 0.008 3.992 25 C -0.115 4.115 26 H 0.101 0.899 27 C 0.001 3.999 28 O -0.373 6.373 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.411 3.851 6.152 11.885 hybrid contribution 0.573 1.881 0.653 2.071 sum -8.838 5.732 6.804 12.541 Atomic orbital electron populations 1.21928 0.95461 1.01877 1.01404 1.21063 0.95089 0.99739 0.94397 0.90838 1.21996 0.96726 1.00895 0.97060 1.21510 0.92263 1.00444 0.85691 1.57588 1.58671 1.55547 1.10978 1.01039 0.73564 0.72574 0.72592 1.93487 1.87280 1.75772 1.39498 1.93450 1.85868 1.68759 1.50238 1.29901 1.22971 1.28219 1.05749 1.20352 0.93363 0.93451 0.93515 1.20456 0.98482 1.07655 1.01433 1.20804 0.97418 0.95475 0.93634 1.21117 0.96112 1.06358 0.99201 1.16975 0.90807 0.87533 0.89042 1.20290 1.21550 1.01860 1.05568 0.85456 1.26183 0.90682 1.01429 0.94096 1.69830 1.30123 1.28460 1.09513 0.86860 0.80438 0.79811 0.84038 1.19117 1.14121 1.19836 1.21158 0.92725 0.99552 0.85761 1.21431 0.96474 1.00941 0.92624 0.89935 1.22302 0.97968 0.94177 0.85426 1.86568 1.80478 1.54014 1.16287 0.92606 0.92757 0.92609 0.90868 0.91664 0.91389 0.87875 0.87112 0.88374 0.88565 0.88322 0.89810 0.88814 0.92133 0.93606 0.93220 0.77886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.82 37.15 0.33 -1.14 16 2 C -0.08 -1.03 2.23 -90.58 -0.20 -1.23 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -1.80 5.36 -26.61 -0.14 -1.94 16 5 C 0.13 2.24 4.84 -3.72 -0.02 2.23 16 6 N -0.99 -18.81 3.24 -113.77 -0.37 -19.18 16 7 S 2.70 60.67 5.10 -107.50 -0.55 60.12 16 8 O -0.97 -24.11 14.43 -57.17 -0.82 -24.94 16 9 O -0.99 -23.15 15.76 -57.17 -0.90 -24.05 16 10 C -0.77 -18.32 5.96 -38.87 -0.23 -18.55 16 11 C 0.01 0.29 9.53 -39.66 -0.38 -0.09 16 12 C -0.26 -5.48 10.05 -39.29 -0.39 -5.87 16 13 C -0.05 -1.16 10.02 -39.66 -0.40 -1.56 16 14 C -0.21 -4.83 6.76 -38.87 -0.26 -5.10 16 15 C 0.16 3.95 5.01 -106.82 -0.53 3.42 16 16 C -0.47 -11.55 7.08 -37.74 -0.27 -11.82 16 17 H 0.13 3.34 4.13 -52.49 -0.22 3.13 16 18 C 0.10 2.38 5.15 -17.34 -0.09 2.29 16 19 N -0.76 -17.91 13.93 55.55 0.77 -17.14 16 20 Si 0.87 17.64 26.29 -169.99 -4.47 13.17 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.22 -4.59 5.37 56.52 0.30 -4.28 16 23 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 24 C 0.13 2.22 5.55 -3.93 -0.02 2.19 16 25 C -0.09 -1.29 2.11 -90.72 -0.19 -1.48 16 26 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 27 C 0.08 0.87 6.19 37.15 0.23 1.10 16 28 O -0.57 -6.79 13.30 -35.23 -0.47 -7.26 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.46 6.29 -51.93 -0.33 0.13 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.21 8.08 -51.93 -0.42 0.80 16 35 H 0.10 2.06 5.44 -51.93 -0.28 1.78 16 36 H 0.11 2.30 7.33 -52.49 -0.38 1.91 16 37 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 38 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 39 H 0.10 2.20 5.93 -52.49 -0.31 1.89 16 40 H 0.29 6.13 8.30 -40.82 -0.34 5.79 16 41 H 0.09 1.66 6.92 -51.93 -0.36 1.30 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.05 0.45 6.14 -51.93 -0.32 0.13 16 45 H 0.37 2.57 9.12 45.56 0.42 2.99 16 LS Contribution 355.19 15.07 5.35 5.35 Total: -1.00 -30.33 355.19 -9.69 -40.02 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -5.66 Total: 11.43 kcal Atomic # 6 Polarization: -34.96 SS G_CDS: -2.57 Total: -37.54 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.41 Total: -36.32 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -2.19 Total: -56.25 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -4.47 Total: 13.17 kcal Atomic # 16 Polarization: 60.67 SS G_CDS: -0.55 Total: 60.12 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.33 -9.69 -40.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601471512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.276 kcal (2) G-P(sol) polarization free energy of solvation -30.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds