Wall clock time and date at job start Tue Mar 31 2020 23:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.46318 * 2 1 4 4 C 1.53041 * 109.46276 * 240.02687 * 2 1 3 5 5 C 1.53186 * 109.31522 * 178.62876 * 4 2 1 6 6 N 1.46923 * 108.77603 * 54.63153 * 5 4 2 7 7 S 1.65610 * 120.63070 * 126.36888 * 6 5 4 8 8 O 1.42102 * 106.39613 * 343.11621 * 7 6 5 9 9 O 1.42098 * 106.40261 * 210.19462 * 7 6 5 10 10 C 1.76197 * 107.21707 * 96.65360 * 7 6 5 11 11 C 1.37643 * 120.12762 * 116.31417 * 10 7 6 12 12 C 1.38617 * 120.24813 * 180.27940 * 11 10 7 13 13 C 1.38656 * 120.49844 * 359.76029 * 12 11 10 14 14 C 1.37600 * 120.25091 * 359.95631 * 13 12 11 15 15 C 1.40701 * 120.12894 * 296.05443 * 10 7 6 16 16 C 1.41395 * 120.24418 * 359.97438 * 15 10 7 17 17 H 1.07995 * 119.99851 * 329.99680 * 16 15 10 18 18 C 1.39945 * 120.00083 * 149.99365 * 16 15 10 19 19 N 1.30819 * 120.00174 * 148.27667 * 18 16 15 20 20 Si 1.86806 * 119.99965 * 328.55421 * 18 16 15 21 21 H 1.48493 * 109.47257 * 265.65527 * 20 18 16 22 22 H 1.48505 * 109.46881 * 25.65441 * 20 18 16 23 23 H 1.48500 * 109.46854 * 145.65488 * 20 18 16 24 24 C 1.46923 * 118.74336 * 306.64474 * 6 5 4 25 25 C 1.52766 * 109.00914 * 53.30659 * 24 6 5 26 26 H 1.08994 * 109.35681 * 65.49637 * 25 24 6 27 27 C 1.52992 * 109.59509 * 185.54051 * 25 24 6 28 28 O 1.42903 * 109.46908 * 294.98150 * 27 25 24 29 29 H 1.08995 * 109.47341 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47366 * 299.97273 * 1 2 3 31 31 H 1.09000 * 109.47325 * 59.97242 * 1 2 3 32 32 H 1.08997 * 109.49730 * 58.67418 * 4 2 1 33 33 H 1.09006 * 109.52035 * 298.59482 * 4 2 1 34 34 H 1.09002 * 109.58652 * 294.84685 * 5 4 2 35 35 H 1.09000 * 109.58732 * 174.42015 * 5 4 2 36 36 H 1.07999 * 119.87277 * 359.97438 * 11 10 7 37 37 H 1.07998 * 119.74536 * 179.73920 * 12 11 10 38 38 H 1.08003 * 119.87136 * 179.97438 * 13 12 11 39 39 H 1.08001 * 120.12292 * 180.02562 * 14 13 12 40 40 H 0.97001 * 120.00525 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.59076 * 173.14046 * 24 6 5 42 42 H 1.09001 * 109.58131 * 293.57139 * 24 6 5 43 43 H 1.09003 * 109.46992 * 54.98203 * 27 25 24 44 44 H 1.08994 * 109.47397 * 174.98327 * 27 25 24 45 45 H 0.96699 * 113.99647 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5713 -0.6890 -1.2640 6 7 4.0675 -1.2492 0.0004 7 16 5.1653 -2.4893 0.0006 8 8 5.1346 -3.0524 -1.3037 9 8 4.9179 -3.2439 1.1790 10 6 6.7626 -1.7717 0.1954 11 6 7.5144 -2.0523 1.3138 12 6 8.7690 -1.4846 1.4723 13 6 9.2832 -0.6330 0.5064 14 6 8.5517 -0.3429 -0.6224 15 6 7.2770 -0.9139 -0.7942 16 6 6.5163 -0.6231 -1.9501 17 1 5.8206 -1.3532 -2.3364 18 6 6.6650 0.6107 -2.5935 19 7 6.5075 0.6958 -3.8894 20 14 7.0960 2.1347 -1.6030 21 1 5.8508 2.8584 -1.2411 22 1 7.8133 1.7344 -0.3658 23 1 7.9665 3.0227 -2.4146 24 6 3.5668 -0.6926 1.2645 25 6 2.0395 -0.7207 1.2503 26 1 1.6973 -1.7555 1.2385 27 6 1.5017 -0.0191 2.4990 28 8 1.8809 -0.7588 3.6614 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5134 0.8902 31 1 -0.3634 0.5143 -0.8897 32 1 1.6574 -0.2209 -2.1398 33 1 1.6976 -1.7558 -1.2387 34 1 3.9145 0.3404 -1.3671 35 1 3.9416 -1.2851 -2.0980 36 1 7.1232 -2.7134 2.0729 37 1 9.3501 -1.7071 2.3550 38 1 10.2617 -0.1959 0.6405 39 1 8.9544 0.3204 -1.3736 40 1 6.6102 1.5511 -4.3354 41 1 3.9341 -1.2910 2.0982 42 1 3.9096 0.3365 1.3717 43 1 1.9165 0.9872 2.5574 44 1 0.4147 0.0386 2.4436 45 1 1.5733 -0.3709 4.4921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601471512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:21 Heat of formation + Delta-G solvation = -137.349014 kcal Electronic energy + Delta-G solvation = -29520.000782 eV Core-core repulsion = 25627.595216 eV Total energy + Delta-G solvation = -3892.405566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.21141 -39.51516 -38.20355 -37.34413 -36.72873 -35.70792 -34.78636 -32.49625 -32.41214 -31.72570 -28.77925 -27.26057 -26.71317 -23.74144 -23.50902 -22.95711 -22.88267 -20.93573 -19.76253 -19.46142 -18.72446 -18.20349 -17.97002 -17.16508 -17.00959 -16.14426 -15.94563 -15.51196 -15.49431 -15.26880 -15.14857 -14.90164 -14.75964 -14.63841 -14.48598 -13.93652 -13.86971 -13.63799 -13.24388 -13.07344 -13.01185 -12.98605 -12.88033 -12.73055 -12.66510 -12.46547 -12.43254 -12.10031 -11.97028 -11.72497 -11.67682 -11.27431 -11.15440 -11.11621 -11.04002 -10.72643 -9.94970 -9.72255 -9.48788 -9.06656 -6.65867 -0.23322 0.40804 0.82107 1.29908 1.39152 1.47128 2.13319 2.21453 2.44390 2.96064 3.31639 3.36642 3.60700 3.80639 3.88073 3.94780 4.09986 4.24260 4.33881 4.35879 4.38728 4.54669 4.56802 4.64734 4.68069 4.75151 4.76841 4.81913 4.84778 4.93872 4.95155 4.98934 5.08022 5.19909 5.22014 5.23736 5.33493 5.45352 5.48523 5.56536 5.60197 5.74251 5.86171 5.89387 6.11193 6.30825 6.58240 6.73211 7.03568 7.96427 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011344 B = 0.005856 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.744352 B = 4780.209886 C = 5674.615706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 H 0.083 0.917 4 C -0.125 4.125 5 C 0.127 3.873 6 N -0.988 5.988 7 S 2.710 3.290 8 O -1.004 7.004 9 O -1.007 7.007 10 C -0.792 4.792 11 C -0.005 4.005 12 C -0.254 4.254 13 C -0.052 4.052 14 C -0.229 4.229 15 C 0.145 3.855 16 C -0.489 4.489 17 H 0.101 0.899 18 C 0.079 3.921 19 N -0.790 5.790 20 Si 0.916 3.084 21 H -0.253 1.253 22 H -0.227 1.227 23 H -0.261 1.261 24 C 0.127 3.873 25 C -0.094 4.094 26 H 0.064 0.936 27 C 0.083 3.917 28 O -0.595 6.595 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.121 0.879 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.103 0.897 40 H 0.303 0.697 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.944 7.347 8.811 15.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 H 0.101 0.899 4 C -0.164 4.164 5 C 0.002 3.998 6 N -0.826 5.826 7 S 2.810 3.190 8 O -0.994 6.994 9 O -0.998 6.998 10 C -0.886 4.886 11 C -0.024 4.024 12 C -0.274 4.274 13 C -0.070 4.070 14 C -0.249 4.249 15 C 0.140 3.860 16 C -0.515 4.515 17 H 0.118 0.882 18 C -0.145 4.145 19 N -0.411 5.411 20 Si 0.735 3.265 21 H -0.178 1.178 22 H -0.149 1.149 23 H -0.185 1.185 24 C 0.002 3.998 25 C -0.115 4.115 26 H 0.082 0.918 27 C 0.005 3.995 28 O -0.404 6.404 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.139 0.861 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -9.928 6.159 7.961 14.137 hybrid contribution 0.786 1.075 0.148 1.340 sum -9.142 7.234 8.109 14.200 Atomic orbital electron populations 1.21882 0.93003 1.02198 1.02989 1.21041 0.97021 0.99443 0.92281 0.89896 1.22005 0.93673 1.01330 0.99372 1.21506 0.94876 0.99273 0.84187 1.57345 1.57756 1.55043 1.12424 1.00586 0.73819 0.73103 0.71531 1.93438 1.87792 1.77165 1.41038 1.93414 1.86147 1.69798 1.50442 1.30101 1.23854 1.28349 1.06319 1.20648 0.94211 0.94112 0.93477 1.20908 0.97874 1.06246 1.02328 1.21236 0.98638 0.94661 0.92507 1.21285 0.95964 1.07177 1.00492 1.17177 0.91544 0.88152 0.89131 1.20187 1.22236 1.02529 1.06579 0.88186 1.26737 0.90237 1.02937 0.94619 1.69819 1.30969 1.29814 1.10538 0.86123 0.80826 0.77066 0.82482 1.17773 1.14944 1.18494 1.21390 0.95063 0.99502 0.83825 1.21445 0.94079 1.00730 0.95210 0.91786 1.22297 0.99346 0.94017 0.83809 1.86514 1.81095 1.55072 1.17706 0.92942 0.90736 0.91495 0.88923 0.92283 0.91658 0.90975 0.86137 0.84918 0.84797 0.87876 0.88610 0.90471 0.90898 0.92065 0.90629 0.75396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.82 71.98 0.63 -1.73 16 2 C -0.08 -1.78 2.23 -10.77 -0.02 -1.81 16 3 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 4 C -0.12 -3.47 5.36 30.67 0.16 -3.31 16 5 C 0.13 4.67 4.84 86.36 0.42 5.09 16 6 N -0.99 -38.67 3.24 -513.86 -1.66 -40.33 16 7 S 2.71 127.23 5.10 -56.49 -0.29 126.95 16 8 O -1.00 -53.25 14.43 -128.00 -1.85 -55.09 16 9 O -1.01 -48.65 15.76 -128.00 -2.02 -50.66 16 10 C -0.79 -38.27 5.96 22.73 0.14 -38.14 16 11 C 0.00 -0.21 9.53 22.22 0.21 0.00 16 12 C -0.25 -10.08 10.05 22.46 0.23 -9.86 16 13 C -0.05 -2.09 10.02 22.22 0.22 -1.86 16 14 C -0.23 -10.49 6.76 22.73 0.15 -10.33 16 15 C 0.14 7.21 5.01 -21.29 -0.11 7.11 16 16 C -0.49 -25.13 7.08 23.46 0.17 -24.96 16 17 H 0.10 5.62 4.13 -2.91 -0.01 5.61 16 18 C 0.08 3.71 5.15 85.26 0.44 4.15 16 19 N -0.79 -38.00 13.93 21.83 0.30 -37.69 16 20 Si 0.92 35.67 26.29 68.60 1.80 37.47 16 21 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 22 H -0.23 -9.07 5.37 99.48 0.53 -8.54 16 23 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 24 C 0.13 4.20 5.55 86.22 0.48 4.68 16 25 C -0.09 -2.46 2.11 -10.86 -0.02 -2.49 16 26 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 27 C 0.08 1.60 6.19 71.98 0.45 2.04 16 28 O -0.60 -13.09 13.30 -148.98 -1.98 -15.07 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.95 6.29 -2.38 -0.01 0.93 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.07 2.40 8.08 -2.39 -0.02 2.38 16 35 H 0.07 3.11 5.44 -2.39 -0.01 3.10 16 36 H 0.12 4.97 7.33 -2.91 -0.02 4.95 16 37 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 38 H 0.13 4.30 8.06 -2.91 -0.02 4.27 16 39 H 0.10 4.51 5.93 -2.91 -0.02 4.50 16 40 H 0.30 12.79 8.30 -92.71 -0.77 12.02 16 41 H 0.08 2.79 6.92 -2.39 -0.02 2.77 16 42 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.08 1.08 6.14 -2.39 -0.01 1.06 16 45 H 0.40 4.49 9.12 -74.06 -0.68 3.82 16 Total: -1.00 -67.58 355.19 -1.98 -69.56 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: 0.17 Total: 36.30 kcal Atomic # 6 Polarization: -74.96 SS G_CDS: 3.54 Total: -71.42 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -1.36 Total: -78.03 kcal Atomic # 8 Polarization: -114.98 SS G_CDS: -5.85 Total: -120.83 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 1.80 Total: 37.47 kcal Atomic # 16 Polarization: 127.23 SS G_CDS: -0.29 Total: 126.95 kcal Total: -67.58 -1.98 -69.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601471512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.793 kcal (2) G-P(sol) polarization free energy of solvation -67.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds