Wall clock time and date at job start Tue Mar 31 2020 22:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47279 * 2 1 4 4 N 1.46501 * 109.47446 * 119.99871 * 2 1 3 5 5 C 1.46507 * 119.99729 * 87.10702 * 4 2 1 6 6 C 1.50695 * 109.47059 * 89.99973 * 5 4 2 7 7 H 1.08000 * 120.00289 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00085 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00488 * 180.02562 * 8 6 5 10 10 Si 1.86808 * 119.99916 * 0.02562 * 8 6 5 11 11 H 1.48494 * 109.47116 * 89.99547 * 10 8 6 12 12 H 1.48491 * 109.47082 * 209.99867 * 10 8 6 13 13 H 1.48505 * 109.46743 * 330.00096 * 10 8 6 14 14 C 1.34774 * 120.00321 * 267.10689 * 4 2 1 15 15 O 1.21551 * 120.00138 * 221.47170 * 14 4 2 16 16 C 1.47849 * 119.99894 * 41.47399 * 14 4 2 17 17 C 1.39598 * 120.14235 * 337.15196 * 16 14 4 18 18 C 1.37940 * 119.85220 * 179.79333 * 17 16 14 19 19 C 1.38379 * 120.13994 * 0.47985 * 18 17 16 20 20 C 1.38342 * 120.29708 * 359.74894 * 19 18 17 21 21 C 1.50699 * 119.92598 * 179.97438 * 20 19 18 22 22 S 1.81403 * 109.47284 * 270.02153 * 21 20 19 23 23 C 1.81399 * 101.92044 * 179.97438 * 22 21 20 24 24 O 1.42095 * 108.58014 * 294.49077 * 22 21 20 25 25 O 1.42103 * 108.57467 * 65.51862 * 22 21 20 26 26 C 1.37979 * 120.14295 * 0.02562 * 20 19 18 27 27 H 1.09001 * 109.46723 * 301.58064 * 1 2 3 28 28 H 1.08993 * 109.47097 * 61.57767 * 1 2 3 29 29 H 1.08998 * 109.47445 * 181.58246 * 1 2 3 30 30 H 1.08999 * 109.47102 * 240.00359 * 2 1 3 31 31 H 1.08997 * 109.46823 * 223.29691 * 3 2 1 32 32 H 1.08996 * 109.47014 * 343.29786 * 3 2 1 33 33 H 1.09002 * 109.47240 * 103.29788 * 3 2 1 34 34 H 1.09006 * 109.47092 * 330.00206 * 5 4 2 35 35 H 1.08998 * 109.46858 * 210.00250 * 5 4 2 36 36 H 0.97002 * 120.00361 * 180.02562 * 9 8 6 37 37 H 1.08007 * 120.07240 * 359.97438 * 17 16 14 38 38 H 1.07993 * 119.92706 * 180.20865 * 18 17 16 39 39 H 1.08002 * 119.84880 * 179.76944 * 19 18 17 40 40 H 1.08998 * 109.47235 * 30.02605 * 21 20 19 41 41 H 1.08997 * 109.46619 * 150.02030 * 21 20 19 42 42 H 1.09007 * 109.46753 * 60.00049 * 23 22 21 43 43 H 1.08996 * 109.47335 * 179.97438 * 23 22 21 44 44 H 1.08993 * 109.47674 * 300.00684 * 23 22 21 45 45 H 1.07998 * 120.06941 * 179.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.2022 -2.1440 1.1791 6 6 3.6030 -2.4678 0.7278 7 1 4.2880 -1.6709 0.4789 8 6 4.0105 -3.7816 0.6335 9 7 5.2331 -4.0644 0.2401 10 14 2.8259 -5.1602 1.0646 11 1 2.0748 -5.5656 -0.1505 12 1 3.5882 -6.3229 1.5863 13 1 1.8728 -4.6878 2.1009 14 6 2.2986 0.0111 2.3122 15 8 3.2903 -0.2534 2.9634 16 6 1.3997 1.1024 2.7445 17 6 0.5643 1.7306 1.8191 18 6 -0.2751 2.7452 2.2298 19 6 -0.2830 3.1473 3.5538 20 6 0.5458 2.5322 4.4750 21 6 0.5308 2.9772 5.9147 22 16 1.7506 4.2987 6.1520 23 6 1.5612 4.6709 7.9173 24 8 3.0483 3.7606 5.9388 25 8 1.3388 5.4345 5.4038 26 6 1.3868 1.5129 4.0782 27 1 -0.3633 0.5382 0.8755 28 1 -0.3633 0.4891 -0.9037 29 1 -0.3634 -1.0272 0.0284 30 1 1.8933 -0.5138 -0.8900 31 1 2.8663 1.5357 -0.7047 32 1 1.2331 2.1132 -0.2953 33 1 2.3840 1.7063 1.0001 34 1 1.4858 -2.5928 0.4910 35 1 2.0420 -2.5422 2.1811 36 1 5.5197 -4.9887 0.1734 37 1 0.5732 1.4208 0.7845 38 1 -0.9242 3.2297 1.5156 39 1 -0.9394 3.9448 3.8695 40 1 -0.4617 3.3487 6.1699 41 1 0.7794 2.1334 6.5584 42 1 1.7793 3.7774 8.5024 43 1 2.2525 5.4658 8.1972 44 1 0.5384 4.9927 8.1131 45 1 2.0336 1.0338 4.7983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608813848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:05 Heat of formation + Delta-G solvation = 16.430187 kcal Electronic energy + Delta-G solvation = -28115.021284 eV Core-core repulsion = 24229.284085 eV Total energy + Delta-G solvation = -3885.737199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.03127 -38.29438 -37.18328 -36.74690 -36.19832 -33.81729 -32.55628 -31.43220 -31.09891 -30.01846 -27.96595 -27.42375 -26.98177 -23.94510 -22.42797 -21.84674 -21.56315 -19.16870 -18.22055 -17.45817 -16.94099 -16.79910 -16.45383 -16.38733 -15.96007 -15.75903 -14.95723 -14.79537 -14.65360 -13.99942 -13.88446 -13.72661 -13.58325 -13.53923 -13.23879 -12.94985 -12.81265 -12.54229 -12.32367 -12.26249 -12.17842 -12.10989 -11.97526 -11.72663 -11.40332 -11.33858 -11.27598 -11.07069 -10.94300 -10.80268 -10.51710 -10.11949 -9.76320 -9.51444 -9.18375 -8.93198 -8.59822 -8.54314 -7.55422 -6.02259 -3.99940 -0.40110 0.95612 1.29580 2.45182 3.01901 3.27228 3.35332 3.36768 3.37659 3.66208 3.72418 3.89297 4.17866 4.30116 4.41193 4.42020 4.66308 4.78313 4.87029 4.95060 5.02306 5.11231 5.14791 5.19509 5.24328 5.28912 5.44451 5.54956 5.66030 5.75093 5.80812 5.87703 5.90749 6.15850 6.26974 6.30027 6.36120 6.40880 6.46984 6.70242 6.79642 6.87881 7.48560 7.66334 8.26535 8.50729 8.79694 9.07643 9.57390 11.11545 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016510 B = 0.003199 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.500345 B = 8749.765425 C = 9612.661960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.139 3.861 3 C -0.187 4.187 4 N -0.620 5.620 5 C 0.227 3.773 6 C -0.522 4.522 7 H 0.079 0.921 8 C 0.069 3.931 9 N -0.897 5.897 10 Si 0.872 3.128 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.267 1.267 14 C 0.566 3.434 15 O -0.493 6.493 16 C -0.133 4.133 17 C -0.138 4.138 18 C -0.141 4.141 19 C -0.083 4.083 20 C -0.115 4.115 21 C -0.558 4.558 22 S 2.412 3.588 23 C -0.661 4.661 24 O -0.925 6.925 25 O -0.935 6.935 26 C -0.048 4.048 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.028 0.972 35 H 0.027 0.973 36 H 0.263 0.737 37 H 0.214 0.786 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.906 17.530 10.062 26.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C 0.035 3.965 3 C -0.243 4.243 4 N -0.355 5.355 5 C 0.107 3.893 6 C -0.561 4.561 7 H 0.097 0.903 8 C -0.132 4.132 9 N -0.536 5.536 10 Si 0.699 3.301 11 H -0.201 1.201 12 H -0.210 1.210 13 H -0.191 1.191 14 C 0.353 3.647 15 O -0.366 6.366 16 C -0.137 4.137 17 C -0.154 4.154 18 C -0.159 4.159 19 C -0.102 4.102 20 C -0.117 4.117 21 C -0.686 4.686 22 S 2.594 3.406 23 C -0.809 4.809 24 O -0.922 6.922 25 O -0.932 6.932 26 C -0.068 4.068 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.230 0.770 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.629 17.603 9.831 25.511 hybrid contribution -1.125 -1.225 0.988 1.934 sum -16.754 16.379 10.819 25.807 Atomic orbital electron populations 1.23293 0.96842 1.03946 1.03163 1.21019 0.92649 0.92774 0.90057 1.23008 1.01563 0.95703 1.04067 1.47509 1.68797 1.08865 1.10290 1.19584 0.97635 0.74979 0.97083 1.21428 0.96569 0.93588 1.44510 0.90341 1.24897 0.95059 0.98447 0.94834 1.69901 1.17136 1.19063 1.47521 0.86918 0.81530 0.82479 0.79160 1.20119 1.21001 1.19147 1.18021 0.83952 0.81228 0.81518 1.90781 1.23847 1.65332 1.56617 1.20544 0.99553 0.99234 0.94341 1.24488 0.91782 0.93848 1.05294 1.21128 1.00471 0.98556 0.95737 1.21241 0.97223 0.98308 0.93463 1.18689 1.01088 1.00010 0.91880 1.29270 1.18396 1.19014 1.01882 1.08342 0.77148 0.77064 0.78026 1.30334 1.11675 1.12328 1.26597 1.93654 1.35165 1.79456 1.83921 1.93589 1.83513 1.48157 1.67961 1.21244 0.95655 0.93999 0.95923 0.89014 0.91425 0.91500 0.88427 0.91633 0.90813 0.90497 0.95391 0.95506 0.92684 0.77027 0.85158 0.85382 0.84211 0.84009 0.85268 0.85254 0.85467 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.62 8.59 37.16 0.32 -2.30 16 2 C 0.14 2.23 3.13 -67.93 -0.21 2.02 16 3 C -0.19 -2.63 7.92 37.16 0.29 -2.33 16 4 N -0.62 -12.92 2.42 -168.57 -0.41 -13.32 16 5 C 0.23 5.51 4.25 -5.19 -0.02 5.49 16 6 C -0.52 -15.20 9.80 -34.44 -0.34 -15.54 16 7 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 8 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 9 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 10 Si 0.87 21.40 27.47 -169.99 -4.67 16.74 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 14 C 0.57 12.12 5.64 -12.33 -0.07 12.05 16 15 O -0.49 -12.76 16.91 5.32 0.09 -12.67 16 16 C -0.13 -2.24 5.11 -104.97 -0.54 -2.78 16 17 C -0.14 -1.83 4.51 -39.18 -0.18 -2.01 16 18 C -0.14 -1.54 10.03 -39.64 -0.40 -1.94 16 19 C -0.08 -0.90 9.69 -39.49 -0.38 -1.28 16 20 C -0.12 -1.37 5.13 -104.68 -0.54 -1.91 16 21 C -0.56 -4.06 5.93 36.01 0.21 -3.85 16 22 S 2.41 21.19 5.34 -107.50 -0.57 20.62 16 23 C -0.66 -2.78 10.62 101.05 1.07 -1.71 16 24 O -0.92 -12.86 18.10 -57.83 -1.05 -13.90 16 25 O -0.94 -11.15 18.10 -57.83 -1.05 -12.20 16 26 C -0.05 -0.74 9.24 -39.19 -0.36 -1.11 16 27 H 0.09 1.07 4.11 -53.99 -0.22 0.85 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.10 1.64 8.09 -51.93 -0.42 1.22 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.76 6.53 -51.93 -0.34 0.42 16 33 H 0.08 1.25 4.08 -51.93 -0.21 1.04 16 34 H 0.03 0.63 7.50 -51.93 -0.39 0.24 16 35 H 0.03 0.68 7.09 -51.93 -0.37 0.32 16 36 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 37 H 0.21 2.58 0.64 -100.34 -0.06 2.51 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.14 0.50 8.08 -51.92 -0.42 0.08 16 41 H 0.14 0.73 8.08 -51.93 -0.42 0.31 16 42 H 0.13 0.34 8.14 -51.92 -0.42 -0.08 16 43 H 0.13 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.13 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.14 2.17 7.82 -52.49 -0.41 1.76 16 LS Contribution 371.48 15.07 5.60 5.60 Total: -1.00 -41.19 371.48 -8.75 -49.94 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.24 Total: 1.77 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -1.23 Total: -15.24 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.37 Total: -40.65 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -2.00 Total: -38.77 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.74 kcal Atomic # 16 Polarization: 21.19 SS G_CDS: -0.57 Total: 20.62 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -41.19 -8.75 -49.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608813848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.367 kcal (2) G-P(sol) polarization free energy of solvation -41.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds