Wall clock time and date at job start Tue Mar 31 2020 23:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 N 1.46500 * 109.46998 * 120.00051 * 2 1 3 5 5 C 1.46505 * 120.00078 * 299.99998 * 4 2 1 6 6 C 1.50699 * 109.46973 * 84.99625 * 5 4 2 7 7 H 1.07999 * 120.00674 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99778 * 180.02562 * 6 5 4 9 9 N 1.31508 * 120.00372 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99815 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47283 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47445 * 120.00225 * 10 8 6 13 13 H 1.48504 * 109.46879 * 239.99840 * 10 8 6 14 14 S 1.65594 * 120.00077 * 119.99765 * 4 2 1 15 15 O 1.42103 * 106.40425 * 203.53865 * 14 4 2 16 16 O 1.42099 * 106.40087 * 336.46170 * 14 4 2 17 17 C 1.76199 * 107.21773 * 90.00156 * 14 4 2 18 18 C 1.38281 * 120.11675 * 269.72466 * 17 14 4 19 19 C 1.37931 * 120.35602 * 179.97438 * 18 17 14 20 20 C 1.39291 * 120.23380 * 0.54893 * 19 18 17 21 21 C 1.38878 * 118.87618 * 359.41157 * 20 19 18 22 22 C 1.37738 * 120.78903 * 0.42462 * 21 20 19 23 23 C 1.51650 * 107.03646 * 180.68120 * 21 20 19 24 24 C 1.54706 * 101.91997 * 15.47677 * 23 21 20 25 25 H 1.08991 * 110.74958 * 93.01870 * 24 23 21 26 26 C 1.53001 * 110.74569 * 216.18565 * 24 23 21 27 27 O 1.36133 * 129.88218 * 179.09516 * 20 19 18 28 28 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 31 31 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 35 35 H 1.08995 * 109.47293 * 204.99893 * 5 4 2 36 36 H 1.09000 * 109.46987 * 325.00019 * 5 4 2 37 37 H 0.96999 * 120.00856 * 180.02562 * 9 8 6 38 38 H 1.08003 * 119.82829 * 0.17232 * 18 17 14 39 39 H 1.07993 * 119.88584 * 180.31905 * 19 18 17 40 40 H 1.08001 * 120.01353 * 179.81308 * 22 21 20 41 41 H 1.08995 * 110.93726 * 133.63148 * 23 21 20 42 42 H 1.08999 * 110.94154 * 257.28080 * 23 21 20 43 43 H 1.09004 * 109.47408 * 59.99771 * 26 24 23 44 44 H 1.08993 * 109.47304 * 179.97438 * 26 24 23 45 45 H 1.09007 * 109.47443 * 299.99926 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6644 -0.1901 2.5268 6 6 0.3224 -0.7438 2.9311 7 1 -0.2132 -1.4029 2.2640 8 6 -0.2218 -0.4088 4.1529 9 7 0.4300 0.3941 4.9652 10 14 -1.8849 -1.0957 4.6544 11 1 -2.4076 -1.9671 3.5716 12 1 -1.7375 -1.8890 5.9011 13 1 -2.8323 0.0235 4.8892 14 16 2.9703 -2.0370 1.0443 15 8 2.8227 -2.7712 2.2519 16 8 2.6903 -2.5839 -0.2370 17 6 4.6444 -1.4895 0.9965 18 6 5.2421 -1.1897 -0.2140 19 6 6.5521 -0.7601 -0.2571 20 6 7.2884 -0.6355 0.9187 21 6 6.6769 -0.9386 2.1283 22 6 5.3676 -1.3641 2.1693 23 6 7.7034 -0.6965 3.2180 24 6 8.7691 0.1415 2.4727 25 1 8.5795 1.2074 2.5986 26 6 10.1758 -0.2174 2.9555 27 8 8.5813 -0.2510 1.1024 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 2.4196 -0.5059 3.2465 36 1 1.6165 0.8986 2.5046 37 1 0.0474 0.6295 5.8249 38 1 4.6792 -1.2893 -1.1303 39 1 7.0097 -0.5232 -1.2061 40 1 4.9054 -1.5993 3.1166 41 1 7.2699 -0.1309 4.0427 42 1 8.1246 -1.6373 3.5723 43 1 10.3655 -1.2744 2.7686 44 1 10.9090 0.3836 2.4177 45 1 10.2553 -0.0175 4.0242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610084785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:09 Heat of formation + Delta-G solvation = -83.153213 kcal Electronic energy + Delta-G solvation = -28433.525689 eV Core-core repulsion = 24543.470230 eV Total energy + Delta-G solvation = -3890.055460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.34748 -37.66628 -36.92211 -36.56093 -35.14850 -33.41894 -32.75731 -31.34305 -30.62144 -30.31173 -27.00602 -26.81191 -26.50787 -23.11025 -22.79113 -21.99356 -21.94359 -20.30970 -18.31454 -17.72947 -17.35080 -17.01148 -16.74955 -16.27689 -15.72789 -15.14239 -14.51446 -14.31607 -14.17270 -13.78065 -13.67360 -13.56511 -13.33139 -13.20508 -13.07247 -12.76899 -12.69985 -12.37703 -12.29959 -12.10379 -11.71501 -11.62051 -11.47421 -11.38861 -11.19562 -11.13642 -11.01854 -10.92685 -10.90242 -10.77037 -10.53702 -10.46153 -10.24047 -9.82131 -9.54046 -9.01958 -8.53284 -8.41426 -8.03574 -6.04574 -4.06356 0.80012 1.11640 1.24177 2.91036 3.31850 3.32519 3.40176 3.45381 3.79288 4.17921 4.24979 4.38809 4.47575 4.61258 4.72904 4.79909 4.93383 5.03919 5.21278 5.26471 5.29503 5.32900 5.36766 5.46773 5.57495 5.64391 5.67339 5.72592 5.73449 5.84883 5.94826 6.01494 6.15785 6.19323 6.20879 6.29596 6.44068 6.51473 6.56871 6.80199 6.97943 7.16240 7.29099 7.43880 7.66212 7.93748 8.23351 8.95751 9.57510 11.04140 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.003848 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.159921 B = 7274.053711 C = 8156.483295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.149 3.851 3 C -0.162 4.162 4 N -0.977 5.977 5 C 0.255 3.745 6 C -0.519 4.519 7 H 0.064 0.936 8 C 0.062 3.938 9 N -0.897 5.897 10 Si 0.893 3.107 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.285 1.285 14 S 2.686 3.314 15 O -0.943 6.943 16 O -0.977 6.977 17 C -0.700 4.700 18 C 0.012 3.988 19 C -0.162 4.162 20 C 0.152 3.848 21 C -0.198 4.198 22 C 0.035 3.965 23 C -0.106 4.106 24 C 0.074 3.926 25 H 0.090 0.910 26 C -0.149 4.149 27 O -0.301 6.301 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.036 0.964 36 H 0.040 0.960 37 H 0.262 0.738 38 H 0.146 0.854 39 H 0.134 0.866 40 H 0.145 0.855 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.200 2.327 -7.238 16.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 C -0.221 4.221 4 N -0.817 5.817 5 C 0.134 3.866 6 C -0.559 4.559 7 H 0.082 0.918 8 C -0.140 4.140 9 N -0.536 5.536 10 Si 0.721 3.279 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.211 1.211 14 S 2.775 3.225 15 O -0.933 6.933 16 O -0.967 6.967 17 C -0.784 4.784 18 C -0.007 4.007 19 C -0.182 4.182 20 C 0.105 3.895 21 C -0.200 4.200 22 C 0.016 3.984 23 C -0.143 4.143 24 C 0.019 3.981 25 H 0.108 0.892 26 C -0.206 4.206 27 O -0.215 6.215 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.164 0.836 39 H 0.152 0.848 40 H 0.163 0.837 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 15.152 1.580 -7.240 16.867 hybrid contribution -0.290 0.254 0.615 0.726 sum 14.863 1.834 -6.625 16.376 Atomic orbital electron populations 1.22134 0.94427 1.02454 1.02195 1.20674 0.95752 0.92721 0.86592 1.22173 1.00564 0.96911 1.02403 1.57552 1.62184 1.48051 1.13933 1.19074 0.96294 0.95935 0.75346 1.21565 1.03499 1.28840 1.01991 0.91759 1.24906 0.97810 0.95118 0.96182 1.69921 1.38376 1.35507 1.09840 0.86519 0.83824 0.78838 0.78747 1.19596 1.20937 1.21109 1.02153 0.72968 0.73987 0.73359 1.93596 1.85159 1.68497 1.46063 1.93495 1.84171 1.76624 1.42406 1.31458 1.27519 1.20744 0.98676 1.20636 0.93414 0.89916 0.96744 1.20308 0.93977 1.07661 0.96223 1.19784 0.83467 0.91269 0.94934 1.20807 0.96218 1.08059 0.94869 1.20112 0.91300 0.89242 0.97745 1.21892 0.93506 1.01447 0.97469 1.23466 0.96782 0.99291 0.78577 0.89180 1.21886 0.93913 1.03061 1.01730 1.86840 1.23900 1.80041 1.30702 0.93470 0.92670 0.89722 0.90049 0.91199 0.93182 0.92405 0.94575 0.94223 0.92871 0.83637 0.84793 0.83739 0.88435 0.88851 0.91350 0.91311 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.21 37.16 0.30 -2.38 16 2 C 0.15 2.56 3.24 -67.93 -0.22 2.34 16 3 C -0.16 -2.40 9.16 37.16 0.34 -2.06 16 4 N -0.98 -19.68 2.73 -108.57 -0.30 -19.98 16 5 C 0.26 6.08 4.67 -5.19 -0.02 6.06 16 6 C -0.52 -13.84 7.53 -34.44 -0.26 -14.10 16 7 H 0.06 1.72 7.07 -52.49 -0.37 1.35 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.90 -25.35 13.29 55.43 0.74 -24.62 16 10 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 S 2.69 53.35 5.64 -107.50 -0.61 52.74 16 15 O -0.94 -22.06 16.27 -57.17 -0.93 -22.99 16 16 O -0.98 -19.85 15.85 -57.17 -0.91 -20.76 16 17 C -0.70 -11.72 5.98 -39.52 -0.24 -11.96 16 18 C 0.01 0.17 9.50 -39.68 -0.38 -0.20 16 19 C -0.16 -2.15 10.06 -39.30 -0.40 -2.54 16 20 C 0.15 2.11 7.04 -38.95 -0.27 1.83 16 21 C -0.20 -2.81 6.27 -104.10 -0.65 -3.46 16 22 C 0.04 0.57 9.51 -39.72 -0.38 0.19 16 23 C -0.11 -1.13 6.64 -26.52 -0.18 -1.30 16 24 C 0.07 0.71 4.25 -25.83 -0.11 0.60 16 25 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 26 C -0.15 -1.02 9.59 37.16 0.36 -0.67 16 27 O -0.30 -3.79 10.82 -20.16 -0.22 -4.01 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 30 H 0.08 1.67 6.65 -51.93 -0.35 1.32 16 31 H 0.08 1.28 6.91 -51.93 -0.36 0.92 16 32 H 0.07 1.15 6.69 -51.93 -0.35 0.80 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.04 0.92 7.61 -51.93 -0.40 0.52 16 36 H 0.04 0.96 6.45 -51.93 -0.33 0.62 16 37 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.15 1.83 7.61 -52.48 -0.40 1.43 16 39 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.14 2.37 7.63 -52.49 -0.40 1.97 16 41 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 0.88 7.93 -51.93 -0.41 0.47 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 LS Contribution 376.55 15.07 5.67 5.67 Total: -1.00 -32.46 376.55 -10.48 -42.95 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.72 Total: 0.70 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: -2.20 Total: -26.06 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.44 Total: -44.59 kcal Atomic # 8 Polarization: -45.70 SS G_CDS: -2.05 Total: -47.76 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 53.35 SS G_CDS: -0.61 Total: 52.74 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.46 -10.48 -42.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610084785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.206 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds