Wall clock time and date at job start Tue Mar 31 2020 23:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 N 1.46500 * 109.46998 * 120.00051 * 2 1 3 5 5 C 1.46505 * 120.00078 * 299.99998 * 4 2 1 6 6 C 1.50699 * 109.46973 * 84.99625 * 5 4 2 7 7 H 1.07999 * 120.00674 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99778 * 180.02562 * 6 5 4 9 9 N 1.31508 * 120.00372 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99815 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47283 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47445 * 120.00225 * 10 8 6 13 13 H 1.48504 * 109.46879 * 239.99840 * 10 8 6 14 14 S 1.65594 * 120.00077 * 119.99765 * 4 2 1 15 15 O 1.42103 * 106.40425 * 203.53865 * 14 4 2 16 16 O 1.42099 * 106.40087 * 336.46170 * 14 4 2 17 17 C 1.76199 * 107.21773 * 90.00156 * 14 4 2 18 18 C 1.38281 * 120.11675 * 269.72466 * 17 14 4 19 19 C 1.37931 * 120.35602 * 179.97438 * 18 17 14 20 20 C 1.39291 * 120.23380 * 0.54893 * 19 18 17 21 21 C 1.38878 * 118.87618 * 359.41157 * 20 19 18 22 22 C 1.37738 * 120.78903 * 0.42462 * 21 20 19 23 23 C 1.51650 * 107.03646 * 180.68120 * 21 20 19 24 24 C 1.54706 * 101.91997 * 15.47677 * 23 21 20 25 25 H 1.08991 * 110.74958 * 93.01870 * 24 23 21 26 26 C 1.53001 * 110.74569 * 216.18565 * 24 23 21 27 27 O 1.36133 * 129.88218 * 179.09516 * 20 19 18 28 28 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 31 31 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 35 35 H 1.08995 * 109.47293 * 204.99893 * 5 4 2 36 36 H 1.09000 * 109.46987 * 325.00019 * 5 4 2 37 37 H 0.96999 * 120.00856 * 180.02562 * 9 8 6 38 38 H 1.08003 * 119.82829 * 0.17232 * 18 17 14 39 39 H 1.07993 * 119.88584 * 180.31905 * 19 18 17 40 40 H 1.08001 * 120.01353 * 179.81308 * 22 21 20 41 41 H 1.08995 * 110.93726 * 133.63148 * 23 21 20 42 42 H 1.08999 * 110.94154 * 257.28080 * 23 21 20 43 43 H 1.09004 * 109.47408 * 59.99771 * 26 24 23 44 44 H 1.08993 * 109.47304 * 179.97438 * 26 24 23 45 45 H 1.09007 * 109.47443 * 299.99926 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6644 -0.1901 2.5268 6 6 0.3224 -0.7438 2.9311 7 1 -0.2132 -1.4029 2.2640 8 6 -0.2218 -0.4088 4.1529 9 7 0.4300 0.3941 4.9652 10 14 -1.8849 -1.0957 4.6544 11 1 -2.4076 -1.9671 3.5716 12 1 -1.7375 -1.8890 5.9011 13 1 -2.8323 0.0235 4.8892 14 16 2.9703 -2.0370 1.0443 15 8 2.8227 -2.7712 2.2519 16 8 2.6903 -2.5839 -0.2370 17 6 4.6444 -1.4895 0.9965 18 6 5.2421 -1.1897 -0.2140 19 6 6.5521 -0.7601 -0.2571 20 6 7.2884 -0.6355 0.9187 21 6 6.6769 -0.9386 2.1283 22 6 5.3676 -1.3641 2.1693 23 6 7.7034 -0.6965 3.2180 24 6 8.7691 0.1415 2.4727 25 1 8.5795 1.2074 2.5986 26 6 10.1758 -0.2174 2.9555 27 8 8.5813 -0.2510 1.1024 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 2.4196 -0.5059 3.2465 36 1 1.6165 0.8986 2.5046 37 1 0.0474 0.6295 5.8249 38 1 4.6792 -1.2893 -1.1303 39 1 7.0097 -0.5232 -1.2061 40 1 4.9054 -1.5993 3.1166 41 1 7.2699 -0.1309 4.0427 42 1 8.1246 -1.6373 3.5723 43 1 10.3655 -1.2744 2.7686 44 1 10.9090 0.3836 2.4177 45 1 10.2553 -0.0175 4.0242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610084785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:08 Heat of formation + Delta-G solvation = -103.731994 kcal Electronic energy + Delta-G solvation = -28434.418052 eV Core-core repulsion = 24543.470230 eV Total energy + Delta-G solvation = -3890.947823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.33022 -38.74951 -38.46852 -38.21991 -36.82533 -34.76159 -34.29804 -32.25711 -32.22576 -31.44164 -28.84986 -27.86828 -27.69757 -24.74885 -24.22600 -23.06784 -22.76023 -21.76550 -19.78344 -18.89832 -18.73893 -18.53308 -18.15548 -17.88392 -16.94828 -16.58775 -16.23536 -15.51855 -15.36872 -15.15845 -14.99692 -14.76968 -14.57955 -14.31148 -14.16315 -14.02175 -13.75983 -13.69113 -13.53656 -13.44776 -13.10795 -13.08968 -12.97432 -12.92118 -12.71493 -12.60206 -12.43713 -12.36675 -12.13589 -12.11917 -12.02360 -11.89952 -11.81816 -11.49899 -11.32679 -10.52302 -10.13595 -9.77790 -9.55532 -8.13981 -6.21612 -0.56054 -0.25448 0.12153 1.39806 1.43003 1.53754 1.95932 2.05719 2.41678 2.46099 2.87721 3.15012 3.18311 3.41208 3.52937 3.67530 3.94634 3.95019 4.03095 4.09374 4.16377 4.35423 4.36439 4.44070 4.57933 4.59307 4.65123 4.71765 4.81175 4.88605 4.92776 4.96204 4.99823 5.02179 5.10440 5.13711 5.16704 5.20017 5.27629 5.37986 5.42181 5.61131 5.71656 5.84067 5.95990 6.03983 6.19345 6.85307 7.44744 8.94074 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.003848 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.159921 B = 7274.053711 C = 8156.483295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.137 3.863 3 C -0.154 4.154 4 N -0.982 5.982 5 C 0.273 3.727 6 C -0.528 4.528 7 H 0.056 0.944 8 C 0.013 3.987 9 N -0.926 5.926 10 Si 0.948 3.052 11 H -0.270 1.270 12 H -0.283 1.283 13 H -0.273 1.273 14 S 2.692 3.308 15 O -0.991 6.991 16 O -0.985 6.985 17 C -0.707 4.707 18 C 0.011 3.989 19 C -0.157 4.157 20 C 0.152 3.848 21 C -0.205 4.205 22 C 0.013 3.987 23 C -0.108 4.108 24 C 0.071 3.929 25 H 0.103 0.897 26 C -0.144 4.144 27 O -0.305 6.305 28 H 0.084 0.916 29 H 0.037 0.963 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.013 0.987 36 H 0.034 0.966 37 H 0.264 0.736 38 H 0.166 0.834 39 H 0.167 0.833 40 H 0.129 0.871 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.870 3.316 -8.739 19.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.032 3.968 3 C -0.213 4.213 4 N -0.822 5.822 5 C 0.150 3.850 6 C -0.568 4.568 7 H 0.074 0.926 8 C -0.186 4.186 9 N -0.566 5.566 10 Si 0.774 3.226 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.198 1.198 14 S 2.787 3.213 15 O -0.981 6.981 16 O -0.976 6.976 17 C -0.796 4.796 18 C -0.009 4.009 19 C -0.176 4.176 20 C 0.105 3.895 21 C -0.207 4.207 22 C -0.007 4.007 23 C -0.145 4.145 24 C 0.016 3.984 25 H 0.120 0.880 26 C -0.201 4.201 27 O -0.219 6.219 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.031 0.969 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.183 0.817 39 H 0.185 0.815 40 H 0.147 0.853 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 16.772 2.560 -8.757 19.093 hybrid contribution -0.654 -0.033 1.029 1.220 sum 16.119 2.527 -7.728 18.053 Atomic orbital electron populations 1.22106 0.94888 1.01416 1.02656 1.21030 0.95573 0.94269 0.85924 1.22107 1.01185 0.95080 1.02878 1.57429 1.63257 1.47977 1.13489 1.18603 0.94403 0.95253 0.76787 1.21843 1.04571 1.28392 1.01984 0.92600 1.25628 1.00999 0.95568 0.96364 1.70007 1.39796 1.36602 1.10225 0.85660 0.80358 0.78476 0.78153 1.19425 1.20942 1.19848 1.01509 0.73915 0.73619 0.72283 1.93529 1.86426 1.70201 1.47980 1.93466 1.85009 1.76973 1.42132 1.30808 1.25221 1.23319 1.00224 1.20896 0.94231 0.89407 0.96317 1.20638 0.93285 1.06183 0.97482 1.20032 0.84020 0.90465 0.94979 1.21110 0.95750 1.07019 0.96835 1.20080 0.92599 0.90892 0.97084 1.22058 0.92928 1.02519 0.97013 1.23775 0.97938 0.99765 0.76907 0.87968 1.21918 0.92144 1.02994 1.03056 1.86850 1.22857 1.79662 1.32496 0.89762 0.94418 0.92446 0.88040 0.93395 0.92174 0.89136 0.96904 0.94761 0.92678 0.81677 0.81524 0.85342 0.87477 0.87689 0.91672 0.90430 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.27 8.21 71.98 0.59 -4.68 16 2 C 0.14 4.63 3.24 44.99 0.15 4.77 16 3 C -0.15 -4.34 9.16 71.98 0.66 -3.68 16 4 N -0.98 -40.57 2.73 -497.40 -1.36 -41.93 16 5 C 0.27 13.58 4.67 85.63 0.40 13.98 16 6 C -0.53 -29.17 7.53 25.60 0.19 -28.98 16 7 H 0.06 3.11 7.07 -2.91 -0.02 3.09 16 8 C 0.01 0.74 5.46 84.66 0.46 1.20 16 9 N -0.93 -53.68 13.29 21.45 0.28 -53.39 16 10 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 13 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 14 S 2.69 110.14 5.64 -56.49 -0.32 109.82 16 15 O -0.99 -49.04 16.27 -128.00 -2.08 -51.12 16 16 O -0.99 -40.18 15.85 -128.00 -2.03 -42.21 16 17 C -0.71 -23.82 5.98 22.31 0.13 -23.69 16 18 C 0.01 0.29 9.50 22.21 0.21 0.50 16 19 C -0.16 -3.72 10.06 22.45 0.23 -3.50 16 20 C 0.15 3.90 7.04 22.68 0.16 4.06 16 21 C -0.21 -5.68 6.27 -19.53 -0.12 -5.80 16 22 C 0.01 0.43 9.51 22.18 0.21 0.64 16 23 C -0.11 -2.13 6.64 30.73 0.20 -1.93 16 24 C 0.07 1.18 4.25 31.18 0.13 1.31 16 25 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 26 C -0.14 -1.55 9.59 71.98 0.69 -0.86 16 27 O -0.30 -6.86 10.82 -95.07 -1.03 -7.89 16 28 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.04 1.40 7.93 -2.39 -0.02 1.38 16 30 H 0.06 2.30 6.65 -2.39 -0.02 2.28 16 31 H 0.10 3.02 6.91 -2.39 -0.02 3.00 16 32 H 0.05 1.56 6.69 -2.39 -0.02 1.55 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.01 0.70 7.61 -2.39 -0.02 0.68 16 36 H 0.03 1.73 6.45 -2.39 -0.02 1.72 16 37 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 38 H 0.17 3.74 7.61 -2.91 -0.02 3.72 16 39 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 40 H 0.13 4.57 7.63 -2.91 -0.02 4.55 16 41 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.10 1.81 7.93 -2.39 -0.02 1.80 16 43 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 44 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 Total: -1.00 -71.99 376.55 0.78 -71.21 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.99 Total: 15.55 kcal Atomic # 6 Polarization: -50.93 SS G_CDS: 4.30 Total: -46.63 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -1.07 Total: -95.32 kcal Atomic # 8 Polarization: -96.08 SS G_CDS: -5.14 Total: -101.22 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: 110.14 SS G_CDS: -0.32 Total: 109.82 kcal Total: -71.99 0.78 -71.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610084785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.525 kcal (2) G-P(sol) polarization free energy of solvation -71.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds