Wall clock time and date at job start Tue Mar 31 2020 22:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47308 * 2 1 4 4 H 1.08998 * 109.47640 * 54.99342 * 3 2 1 5 5 C 1.50703 * 109.47424 * 174.99478 * 3 2 1 6 6 H 1.07997 * 119.99891 * 119.99668 * 5 3 2 7 7 C 1.37871 * 119.99985 * 300.00020 * 5 3 2 8 8 N 1.31515 * 119.99995 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99957 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46936 * 89.99797 * 9 7 5 11 11 H 1.48505 * 109.46884 * 209.99687 * 9 7 5 12 12 H 1.48492 * 109.47144 * 329.99587 * 9 7 5 13 13 N 1.46505 * 109.46707 * 294.99738 * 3 2 1 14 14 C 1.34772 * 120.00264 * 85.00008 * 13 3 2 15 15 O 1.21278 * 120.00073 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99952 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.47066 * 300.00127 * 16 14 13 18 18 C 1.53001 * 109.46947 * 59.99929 * 16 14 13 19 19 C 1.50700 * 109.47310 * 179.97438 * 16 14 13 20 20 C 1.38227 * 119.99928 * 119.99852 * 19 16 14 21 21 C 1.38243 * 119.99892 * 179.97438 * 20 19 16 22 22 C 1.38228 * 119.99666 * 359.97421 * 21 20 19 23 23 S 1.76203 * 119.99649 * 180.02562 * 22 21 20 24 24 C 1.81404 * 104.44838 * 90.00553 * 23 22 21 25 25 O 1.42100 * 104.28012 * 333.93528 * 23 22 21 26 26 O 1.42100 * 104.27885 * 206.07639 * 23 22 21 27 27 C 1.38234 * 120.00757 * 0.28176 * 22 21 20 28 28 C 1.38234 * 119.99832 * 299.98330 * 19 16 14 29 29 H 1.08996 * 109.47551 * 300.00803 * 1 2 3 30 30 H 1.09003 * 109.46558 * 60.00960 * 1 2 3 31 31 H 1.09001 * 109.46994 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47551 * 239.99196 * 2 1 3 33 33 H 1.09010 * 109.46863 * 119.99262 * 2 1 3 34 34 H 0.97002 * 120.00233 * 180.02562 * 8 7 5 35 35 H 0.97004 * 119.99622 * 264.99904 * 13 3 2 36 36 H 1.08994 * 109.47209 * 179.97438 * 18 16 14 37 37 H 1.09005 * 109.47357 * 299.99902 * 18 16 14 38 38 H 1.09000 * 109.47075 * 60.00205 * 18 16 14 39 39 H 1.08000 * 120.00145 * 359.97438 * 20 19 16 40 40 H 1.08001 * 119.99594 * 180.02562 * 21 20 19 41 41 H 1.09002 * 109.47124 * 299.99881 * 24 23 22 42 42 H 1.09001 * 109.46975 * 180.02562 * 24 23 22 43 43 H 1.09004 * 109.47147 * 59.99966 * 24 23 22 44 44 H 1.08001 * 120.00506 * 179.72371 * 27 22 21 45 45 H 1.07998 * 120.00389 * 359.97438 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5420 1.4443 0.1240 6 1 4.1473 1.8888 -0.6521 7 6 4.1432 0.8784 1.2281 8 7 3.4061 0.3375 2.1734 9 14 6.0049 0.8801 1.3814 10 1 6.4426 2.1130 2.0839 11 1 6.4389 -0.3110 2.1550 12 1 6.6131 0.8394 0.0274 13 7 1.6525 2.0974 -1.2519 14 6 0.4353 2.6642 -1.3672 15 8 -0.3392 2.6327 -0.4344 16 6 0.0369 3.3384 -2.6548 17 1 0.7284 4.1539 -2.8670 18 6 0.0810 2.3219 -3.7975 19 6 -1.3611 3.8857 -2.5237 20 6 -1.5897 5.2407 -2.6737 21 6 -2.8721 5.7427 -2.5539 22 6 -3.9259 4.8896 -2.2848 23 16 -5.5606 5.5293 -2.1329 24 6 -6.2319 5.4604 -3.8167 25 8 -5.3729 6.8777 -1.7257 26 8 -6.2255 4.5961 -1.2924 27 6 -3.6966 3.5352 -2.1296 28 6 -2.4148 3.0327 -2.2538 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8290 -0.0602 2.9505 35 1 2.2721 2.1229 -1.9979 36 1 -0.2075 2.8094 -4.7287 37 1 1.0920 1.9256 -3.8925 38 1 -0.6104 1.5065 -3.5853 39 1 -0.7664 5.9072 -2.8843 40 1 -3.0507 6.8013 -2.6715 41 1 -5.6164 6.0698 -4.4785 42 1 -7.2528 5.8425 -3.8167 43 1 -6.2298 4.4281 -4.1668 44 1 -4.5193 2.8693 -1.9149 45 1 -2.2363 1.9739 -2.1373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613037842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:44 Heat of formation + Delta-G solvation = -89.770571 kcal Electronic energy + Delta-G solvation = -27461.957671 eV Core-core repulsion = 23571.615262 eV Total energy + Delta-G solvation = -3890.342410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.13286 -38.57575 -37.27617 -36.11513 -35.23280 -34.13776 -32.39098 -31.11894 -31.00066 -29.98310 -29.48383 -26.96552 -24.90428 -23.26955 -22.92244 -22.12236 -20.02063 -19.29524 -19.18657 -17.97479 -17.21850 -16.44440 -16.36257 -15.88664 -15.68123 -15.13587 -14.99731 -14.65853 -14.46708 -14.20507 -13.73524 -13.55862 -13.53764 -13.33966 -13.10556 -12.89283 -12.69849 -12.50446 -12.25670 -12.15168 -12.01917 -11.76004 -11.57650 -11.44787 -11.32868 -11.27712 -11.01208 -10.99540 -10.86716 -10.70061 -10.34874 -10.21608 -9.66572 -9.28834 -9.08773 -9.03490 -8.89265 -8.52738 -7.86936 -6.15532 -4.25342 -0.15725 0.76302 1.30294 2.67716 3.21794 3.27611 3.29432 3.31231 3.34279 3.76465 3.88963 4.07690 4.34658 4.42478 4.49783 4.54395 4.74643 4.83341 5.10399 5.11417 5.16326 5.26276 5.29925 5.37764 5.41601 5.64907 5.68473 5.77147 5.92475 6.00532 6.02034 6.16811 6.35028 6.41159 6.48818 6.61638 6.80136 6.98924 7.16121 7.32634 7.40734 7.58032 7.69048 7.86474 8.14689 8.61390 8.73785 9.07832 9.42234 10.89728 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023823 B = 0.002438 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.037497 B =11482.520098 C =11671.176317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.705 5.705 14 C 0.505 3.495 15 O -0.538 6.538 16 C -0.088 4.088 17 H 0.103 0.897 18 C -0.139 4.139 19 C 0.002 3.998 20 C -0.136 4.136 21 C -0.028 4.028 22 C -0.665 4.665 23 S 2.502 3.498 24 C -0.651 4.651 25 O -0.941 6.941 26 O -0.938 6.938 27 C -0.026 4.026 28 C -0.102 4.102 29 H 0.050 0.950 30 H 0.037 0.963 31 H 0.022 0.978 32 H 0.030 0.970 33 H 0.099 0.901 34 H 0.265 0.735 35 H 0.388 0.612 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.139 0.861 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.047 7.794 -17.118 23.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.353 5.353 14 C 0.289 3.711 15 O -0.416 6.416 16 C -0.110 4.110 17 H 0.121 0.879 18 C -0.196 4.196 19 C 0.001 3.999 20 C -0.155 4.155 21 C -0.047 4.047 22 C -0.752 4.752 23 S 2.682 3.318 24 C -0.801 4.801 25 O -0.938 6.938 26 O -0.936 6.936 27 C -0.045 4.045 28 C -0.121 4.121 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.117 0.883 34 H 0.075 0.925 35 H 0.220 0.780 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.148 0.852 40 H 0.156 0.844 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.157 0.843 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.961 7.936 -15.482 22.946 hybrid contribution 1.960 -0.353 -0.836 2.160 sum -13.001 7.583 -16.318 22.199 Atomic orbital electron populations 1.21839 0.98384 0.98001 1.01174 1.21925 0.92569 0.99802 1.02257 1.18788 0.94184 0.89160 0.80939 0.93343 1.21217 0.90706 1.39120 1.06318 0.92140 1.24886 0.98603 0.94785 0.95396 1.69891 1.35160 1.37529 1.09286 0.86461 0.84854 0.77678 0.78172 1.20571 1.21056 1.19879 1.46475 1.14428 1.55843 1.18542 1.20025 0.83088 0.79594 0.88427 1.90718 1.51298 1.59482 1.40137 1.20552 0.94306 0.99913 0.96222 0.87897 1.21770 1.03294 0.98201 0.96364 1.19759 0.94225 0.93441 0.92472 1.21142 0.97192 0.94714 1.02413 1.20802 0.91971 0.98964 0.92963 1.30325 1.21968 1.03392 1.19562 1.05048 0.74871 0.74608 0.77306 1.30240 1.13172 1.12041 1.24607 1.93577 1.85327 1.35067 1.79825 1.93590 1.73959 1.63670 1.62337 1.20875 0.98107 0.92986 0.92534 1.21090 0.91860 1.00637 0.98537 0.93136 0.94378 0.95879 0.95073 0.88319 0.92523 0.78002 0.91721 0.91146 0.91770 0.85167 0.84356 0.85064 0.85230 0.85004 0.84313 0.85089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.52 37.16 0.32 -2.63 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.59 2.24 -69.08 -0.15 6.43 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.54 -13.77 8.73 -34.44 -0.30 -14.07 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.44 11.29 55.43 0.63 -23.81 16 9 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 N -0.71 -13.66 4.91 -54.93 -0.27 -13.93 16 14 C 0.50 9.22 5.59 -10.99 -0.06 9.16 16 15 O -0.54 -11.91 12.25 5.56 0.07 -11.84 16 16 C -0.09 -1.15 2.90 -92.92 -0.27 -1.42 16 17 H 0.10 1.14 7.88 -51.93 -0.41 0.73 16 18 C -0.14 -1.44 8.90 37.16 0.33 -1.11 16 19 C 0.00 0.02 4.39 -104.63 -0.46 -0.44 16 20 C -0.14 -1.60 9.67 -39.58 -0.38 -1.98 16 21 C -0.03 -0.31 9.47 -39.58 -0.37 -0.69 16 22 C -0.66 -7.44 5.66 -39.59 -0.22 -7.67 16 23 S 2.50 23.23 5.80 -107.50 -0.62 22.60 16 24 C -0.65 -2.81 10.80 101.05 1.09 -1.72 16 25 O -0.94 -11.63 17.13 -57.54 -0.99 -12.62 16 26 O -0.94 -12.05 17.12 -57.54 -0.99 -13.04 16 27 C -0.03 -0.32 9.47 -39.58 -0.37 -0.70 16 28 C -0.10 -1.40 7.93 -39.58 -0.31 -1.72 16 29 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 30 H 0.04 0.77 5.65 -51.93 -0.29 0.48 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.10 2.61 5.95 -51.92 -0.31 2.30 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 35 H 0.39 6.45 7.96 -40.82 -0.32 6.13 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.69 7.56 -51.93 -0.39 0.30 16 38 H 0.06 0.70 7.38 -51.93 -0.38 0.32 16 39 H 0.13 1.23 7.95 -52.49 -0.42 0.81 16 40 H 0.14 1.22 7.57 -52.49 -0.40 0.82 16 41 H 0.13 0.36 8.14 -51.92 -0.42 -0.06 16 42 H 0.13 0.36 8.14 -51.92 -0.42 -0.06 16 43 H 0.13 0.40 8.14 -51.92 -0.42 -0.02 16 44 H 0.14 1.46 7.57 -52.49 -0.40 1.07 16 45 H 0.13 1.82 7.52 -52.49 -0.39 1.42 16 LS Contribution 377.69 15.07 5.69 5.69 Total: -1.00 -35.57 377.69 -9.51 -45.09 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.60 Total: 6.57 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -1.42 Total: -20.01 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.36 Total: -37.74 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -1.90 Total: -37.50 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 23.23 SS G_CDS: -0.62 Total: 22.60 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.57 -9.51 -45.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.685 kcal (2) G-P(sol) polarization free energy of solvation -35.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds