Wall clock time and date at job start Tue Mar 31 2020 22:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46924 * 2 1 4 4 H 1.08991 * 109.47024 * 305.37916 * 3 2 1 5 5 C 1.50700 * 109.47118 * 185.37762 * 3 2 1 6 6 H 1.08000 * 119.99723 * 244.80432 * 5 3 2 7 7 C 1.37872 * 120.00220 * 64.80007 * 5 3 2 8 8 N 1.31521 * 119.99933 * 7.04138 * 7 5 3 9 9 Si 1.86800 * 120.00066 * 187.04704 * 7 5 3 10 10 H 1.48493 * 109.47466 * 84.99228 * 9 7 5 11 11 H 1.48507 * 109.46835 * 204.99188 * 9 7 5 12 12 H 1.48497 * 109.46960 * 324.98940 * 9 7 5 13 13 N 1.46497 * 109.46925 * 65.37834 * 3 2 1 14 14 C 1.34778 * 120.00112 * 274.99863 * 13 3 2 15 15 O 1.21287 * 119.99626 * 0.02562 * 14 13 3 16 16 C 1.50698 * 120.00134 * 180.02562 * 14 13 3 17 17 H 1.08996 * 109.47237 * 299.99698 * 16 14 13 18 18 C 1.53003 * 109.47149 * 60.00148 * 16 14 13 19 19 C 1.50706 * 109.46910 * 179.97438 * 16 14 13 20 20 C 1.38230 * 120.00084 * 299.72829 * 19 16 14 21 21 C 1.38232 * 120.00062 * 179.81587 * 20 19 16 22 22 C 1.38238 * 120.00030 * 0.41394 * 21 20 19 23 23 S 1.76196 * 120.00112 * 179.79711 * 22 21 20 24 24 C 1.81400 * 104.44842 * 270.01677 * 23 22 21 25 25 O 1.42096 * 104.28218 * 26.09101 * 23 22 21 26 26 O 1.42107 * 104.27850 * 153.95079 * 23 22 21 27 27 C 1.38236 * 119.99783 * 359.81145 * 22 21 20 28 28 C 1.38231 * 119.99748 * 120.00137 * 19 16 14 29 29 H 1.09000 * 109.46972 * 299.99465 * 1 2 3 30 30 H 1.09005 * 109.46688 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47314 * 59.99538 * 1 2 3 32 32 H 1.09005 * 109.47430 * 120.00047 * 2 1 3 33 33 H 1.09000 * 109.46972 * 240.00535 * 2 1 3 34 34 H 0.96998 * 119.99724 * 180.02562 * 8 7 5 35 35 H 0.96996 * 120.00190 * 95.00124 * 13 3 2 36 36 H 1.08996 * 109.47104 * 299.99832 * 18 16 14 37 37 H 1.09001 * 109.47106 * 59.99985 * 18 16 14 38 38 H 1.09003 * 109.47190 * 179.97438 * 18 16 14 39 39 H 1.07997 * 120.00019 * 359.97438 * 20 19 16 40 40 H 1.08005 * 120.00542 * 180.20746 * 21 20 19 41 41 H 1.09003 * 109.46924 * 60.00046 * 24 23 22 42 42 H 1.09005 * 109.47232 * 180.02562 * 24 23 22 43 43 H 1.09000 * 109.47230 * 300.00484 * 24 23 22 44 44 H 1.08003 * 120.00390 * 179.97438 * 27 22 21 45 45 H 1.08008 * 120.00455 * 359.97438 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6001 1.9834 -0.8378 5 6 3.5411 1.4447 -0.1332 6 1 4.1543 1.8170 0.6742 7 6 4.1316 0.9713 -1.2855 8 7 3.3876 0.6477 -2.3206 9 14 5.9885 0.7894 -1.3767 10 1 6.3862 -0.5216 -0.8038 11 1 6.4240 0.8627 -2.7946 12 1 6.6315 1.8826 -0.6043 13 7 1.6602 2.0947 1.2556 14 6 0.4436 2.6613 1.3796 15 8 -0.3369 2.6309 0.4518 16 6 0.0531 3.3327 2.6710 17 1 0.0895 2.6069 3.4834 18 6 1.0254 4.4768 2.9654 19 6 -1.3452 3.8813 2.5492 20 6 -1.6344 4.8286 1.5850 21 6 -2.9179 5.3290 1.4707 22 6 -3.9103 4.8884 2.3263 23 16 -5.5451 5.5302 2.1841 24 6 -5.5598 6.9776 3.2775 25 8 -5.6473 5.9311 0.8247 26 8 -6.3726 4.5008 2.7086 27 6 -3.6200 3.9445 3.2935 28 6 -2.3373 3.4413 3.4053 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.8031 0.3143 -3.1312 35 1 2.2843 2.1188 1.9978 36 1 2.0369 4.0804 3.0534 37 1 0.9890 5.2027 2.1530 38 1 0.7427 4.9627 3.8993 39 1 -0.8582 5.1759 0.9192 40 1 -3.1448 6.0668 0.7152 41 1 -4.8105 7.6944 2.9414 42 1 -6.5453 7.4425 3.2516 43 1 -5.3323 6.6653 4.2967 44 1 -4.3952 3.6004 3.9623 45 1 -2.1105 2.7040 4.1613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613037844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:51 Heat of formation + Delta-G solvation = -91.031334 kcal Electronic energy + Delta-G solvation = -27413.821103 eV Core-core repulsion = 23523.424022 eV Total energy + Delta-G solvation = -3890.397081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.12150 -38.57648 -37.27355 -36.11279 -35.23062 -34.13455 -32.37064 -31.13381 -31.04706 -29.97251 -29.45756 -26.99380 -24.89056 -23.24109 -22.93051 -22.12131 -20.05113 -19.30891 -19.18749 -17.97274 -17.24331 -16.43298 -16.31624 -15.87263 -15.64188 -15.30647 -14.91223 -14.67536 -14.43307 -14.14033 -13.69775 -13.62151 -13.53515 -13.35516 -13.14471 -12.92811 -12.71273 -12.34973 -12.25415 -12.14916 -12.06796 -11.76679 -11.51522 -11.44859 -11.35848 -11.30451 -11.06370 -11.01072 -10.80752 -10.70383 -10.36773 -10.23128 -9.71112 -9.28374 -9.12699 -9.02502 -8.88361 -8.52570 -7.88135 -6.17407 -4.24341 -0.15489 0.76537 1.30466 2.67976 3.21835 3.28251 3.29670 3.29857 3.34695 3.76698 3.89233 4.08355 4.34358 4.42770 4.50123 4.54735 4.74865 4.83428 5.11224 5.12479 5.15935 5.26635 5.30440 5.38061 5.41861 5.66594 5.68868 5.78488 5.92924 6.02123 6.03370 6.17944 6.33372 6.37713 6.49311 6.58544 6.80430 6.96639 7.14827 7.29889 7.38622 7.57205 7.67689 7.81218 8.05323 8.61544 8.75008 9.07817 9.42229 10.90365 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023900 B = 0.002448 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.255576 B =11436.291217 C =11680.578435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.270 3.730 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.705 5.705 14 C 0.505 3.495 15 O -0.538 6.538 16 C -0.088 4.088 17 H 0.102 0.898 18 C -0.139 4.139 19 C 0.002 3.998 20 C -0.102 4.102 21 C -0.026 4.026 22 C -0.665 4.665 23 S 2.502 3.498 24 C -0.651 4.651 25 O -0.938 6.938 26 O -0.941 6.941 27 C -0.028 4.028 28 C -0.136 4.136 29 H 0.040 0.960 30 H 0.023 0.977 31 H 0.051 0.949 32 H 0.033 0.967 33 H 0.082 0.918 34 H 0.265 0.735 35 H 0.387 0.613 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.132 0.868 40 H 0.139 0.861 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.138 0.862 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.055 11.875 15.719 23.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.168 3.832 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.726 3.274 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.353 5.353 14 C 0.289 3.711 15 O -0.416 6.416 16 C -0.109 4.109 17 H 0.120 0.880 18 C -0.197 4.197 19 C 0.001 3.999 20 C -0.121 4.121 21 C -0.045 4.045 22 C -0.752 4.752 23 S 2.682 3.318 24 C -0.801 4.801 25 O -0.935 6.935 26 O -0.938 6.938 27 C -0.047 4.047 28 C -0.155 4.155 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.220 0.780 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.150 0.850 40 H 0.157 0.843 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.156 0.844 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.245 11.441 14.311 22.608 hybrid contribution 2.148 -0.092 0.695 2.260 sum -11.097 11.349 15.006 21.843 Atomic orbital electron populations 1.21836 0.98041 0.98158 1.01455 1.21860 0.92904 0.99906 1.01292 1.18792 0.94391 0.88975 0.81020 0.92719 1.21167 0.90598 1.43644 1.02128 0.92151 1.24891 0.98454 0.95091 0.95110 1.69969 1.35427 1.42936 1.03310 0.86522 0.85022 0.78611 0.77294 1.20444 1.21144 1.19938 1.46462 1.14306 1.55955 1.18554 1.20034 0.83017 0.79622 0.88474 1.90723 1.50796 1.59448 1.40610 1.20551 0.92680 0.98891 0.98823 0.88002 1.21773 0.98498 0.97171 1.02217 1.19760 0.94175 0.92819 0.93128 1.21101 0.96947 0.96687 0.97385 1.20879 0.91914 0.96831 0.94844 1.30329 1.22823 1.13821 1.08278 1.05045 0.74483 0.76521 0.75774 1.30241 1.11620 1.20893 1.17317 1.93591 1.85639 1.83780 1.30535 1.93577 1.65480 1.53547 1.81214 1.20799 0.96739 0.92513 0.94666 1.21133 0.92810 1.01057 1.00511 0.94133 0.95818 0.93002 0.94845 0.89934 0.92512 0.78024 0.91079 0.91676 0.91770 0.85012 0.84303 0.84996 0.85230 0.85068 0.84375 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.52 37.16 0.32 -2.72 16 2 C -0.12 -2.85 5.49 -26.73 -0.15 -3.00 16 3 C 0.27 6.54 2.11 -69.08 -0.15 6.40 16 4 H 0.05 1.56 7.55 -51.93 -0.39 1.17 16 5 C -0.54 -13.74 8.67 -34.44 -0.30 -14.04 16 6 H 0.06 1.47 7.73 -52.49 -0.41 1.06 16 7 C 0.07 1.81 5.19 -17.82 -0.09 1.71 16 8 N -0.88 -24.56 12.00 55.43 0.67 -23.90 16 9 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.71 -13.60 4.92 -54.93 -0.27 -13.87 16 14 C 0.50 9.20 5.61 -10.99 -0.06 9.14 16 15 O -0.54 -11.89 12.27 5.55 0.07 -11.82 16 16 C -0.09 -1.14 2.90 -92.92 -0.27 -1.41 16 17 H 0.10 1.11 7.88 -51.93 -0.41 0.70 16 18 C -0.14 -1.48 8.90 37.16 0.33 -1.15 16 19 C 0.00 0.02 4.39 -104.62 -0.46 -0.44 16 20 C -0.10 -1.41 7.94 -39.59 -0.31 -1.73 16 21 C -0.03 -0.32 9.47 -39.58 -0.37 -0.69 16 22 C -0.66 -7.44 5.66 -39.58 -0.22 -7.66 16 23 S 2.50 23.24 5.80 -107.50 -0.62 22.61 16 24 C -0.65 -2.83 10.80 101.05 1.09 -1.74 16 25 O -0.94 -12.09 17.13 -57.54 -0.99 -13.08 16 26 O -0.94 -11.60 17.13 -57.54 -0.99 -12.58 16 27 C -0.03 -0.31 9.47 -39.58 -0.37 -0.69 16 28 C -0.14 -1.59 9.67 -39.58 -0.38 -1.97 16 29 H 0.04 0.87 5.64 -51.93 -0.29 0.57 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 1.24 7.87 -51.93 -0.41 0.83 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 2.17 6.64 -51.93 -0.34 1.82 16 34 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.39 6.40 7.95 -40.82 -0.32 6.08 16 36 H 0.07 0.72 7.56 -51.93 -0.39 0.33 16 37 H 0.06 0.74 7.37 -51.93 -0.38 0.36 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.13 1.85 7.51 -52.49 -0.39 1.46 16 40 H 0.14 1.47 7.57 -52.48 -0.40 1.08 16 41 H 0.13 0.41 8.14 -51.92 -0.42 -0.02 16 42 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 43 H 0.13 0.37 8.14 -51.92 -0.42 -0.06 16 44 H 0.14 1.21 7.57 -52.48 -0.40 0.81 16 45 H 0.13 1.20 7.95 -52.48 -0.42 0.78 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -35.65 378.85 -9.48 -45.14 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.63 Total: 6.56 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -1.41 Total: -19.99 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.39 Total: -37.77 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -1.90 Total: -37.48 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 23.24 SS G_CDS: -0.62 Total: 22.61 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.65 -9.48 -45.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.896 kcal (2) G-P(sol) polarization free energy of solvation -35.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds