Wall clock time and date at job start Tue Mar 31 2020 22:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46924 * 2 1 4 4 H 1.08991 * 109.47024 * 305.37916 * 3 2 1 5 5 C 1.50700 * 109.47118 * 185.37762 * 3 2 1 6 6 H 1.08000 * 119.99723 * 244.80432 * 5 3 2 7 7 C 1.37872 * 120.00220 * 64.80007 * 5 3 2 8 8 N 1.31521 * 119.99933 * 7.04138 * 7 5 3 9 9 Si 1.86800 * 120.00066 * 187.04704 * 7 5 3 10 10 H 1.48493 * 109.47466 * 84.99228 * 9 7 5 11 11 H 1.48507 * 109.46835 * 204.99188 * 9 7 5 12 12 H 1.48497 * 109.46960 * 324.98940 * 9 7 5 13 13 N 1.46497 * 109.46925 * 65.37834 * 3 2 1 14 14 C 1.34778 * 120.00112 * 274.99863 * 13 3 2 15 15 O 1.21287 * 119.99626 * 0.02562 * 14 13 3 16 16 C 1.50698 * 120.00134 * 180.02562 * 14 13 3 17 17 H 1.08996 * 109.47237 * 299.99698 * 16 14 13 18 18 C 1.53003 * 109.47149 * 60.00148 * 16 14 13 19 19 C 1.50706 * 109.46910 * 179.97438 * 16 14 13 20 20 C 1.38230 * 120.00084 * 299.72829 * 19 16 14 21 21 C 1.38232 * 120.00062 * 179.81587 * 20 19 16 22 22 C 1.38238 * 120.00030 * 0.41394 * 21 20 19 23 23 S 1.76196 * 120.00112 * 179.79711 * 22 21 20 24 24 C 1.81400 * 104.44842 * 270.01677 * 23 22 21 25 25 O 1.42096 * 104.28218 * 26.09101 * 23 22 21 26 26 O 1.42107 * 104.27850 * 153.95079 * 23 22 21 27 27 C 1.38236 * 119.99783 * 359.81145 * 22 21 20 28 28 C 1.38231 * 119.99748 * 120.00137 * 19 16 14 29 29 H 1.09000 * 109.46972 * 299.99465 * 1 2 3 30 30 H 1.09005 * 109.46688 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47314 * 59.99538 * 1 2 3 32 32 H 1.09005 * 109.47430 * 120.00047 * 2 1 3 33 33 H 1.09000 * 109.46972 * 240.00535 * 2 1 3 34 34 H 0.96998 * 119.99724 * 180.02562 * 8 7 5 35 35 H 0.96996 * 120.00190 * 95.00124 * 13 3 2 36 36 H 1.08996 * 109.47104 * 299.99832 * 18 16 14 37 37 H 1.09001 * 109.47106 * 59.99985 * 18 16 14 38 38 H 1.09003 * 109.47190 * 179.97438 * 18 16 14 39 39 H 1.07997 * 120.00019 * 359.97438 * 20 19 16 40 40 H 1.08005 * 120.00542 * 180.20746 * 21 20 19 41 41 H 1.09003 * 109.46924 * 60.00046 * 24 23 22 42 42 H 1.09005 * 109.47232 * 180.02562 * 24 23 22 43 43 H 1.09000 * 109.47230 * 300.00484 * 24 23 22 44 44 H 1.08003 * 120.00390 * 179.97438 * 27 22 21 45 45 H 1.08008 * 120.00455 * 359.97438 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6001 1.9834 -0.8378 5 6 3.5411 1.4447 -0.1332 6 1 4.1543 1.8170 0.6742 7 6 4.1316 0.9713 -1.2855 8 7 3.3876 0.6477 -2.3206 9 14 5.9885 0.7894 -1.3767 10 1 6.3862 -0.5216 -0.8038 11 1 6.4240 0.8627 -2.7946 12 1 6.6315 1.8826 -0.6043 13 7 1.6602 2.0947 1.2556 14 6 0.4436 2.6613 1.3796 15 8 -0.3369 2.6309 0.4518 16 6 0.0531 3.3327 2.6710 17 1 0.0895 2.6069 3.4834 18 6 1.0254 4.4768 2.9654 19 6 -1.3452 3.8813 2.5492 20 6 -1.6344 4.8286 1.5850 21 6 -2.9179 5.3290 1.4707 22 6 -3.9103 4.8884 2.3263 23 16 -5.5451 5.5302 2.1841 24 6 -5.5598 6.9776 3.2775 25 8 -5.6473 5.9311 0.8247 26 8 -6.3726 4.5008 2.7086 27 6 -3.6200 3.9445 3.2935 28 6 -2.3373 3.4413 3.4053 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.8031 0.3143 -3.1312 35 1 2.2843 2.1188 1.9978 36 1 2.0369 4.0804 3.0534 37 1 0.9890 5.2027 2.1530 38 1 0.7427 4.9627 3.8993 39 1 -0.8582 5.1759 0.9192 40 1 -3.1448 6.0668 0.7152 41 1 -4.8105 7.6944 2.9414 42 1 -6.5453 7.4425 3.2516 43 1 -5.3323 6.6653 4.2967 44 1 -4.3952 3.6004 3.9623 45 1 -2.1105 2.7040 4.1613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613037844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:50 Heat of formation + Delta-G solvation = -116.918304 kcal Electronic energy + Delta-G solvation = -27414.943646 eV Core-core repulsion = 23523.424022 eV Total energy + Delta-G solvation = -3891.519624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.33767 -39.81975 -38.11762 -37.00906 -36.91780 -35.30550 -34.23182 -32.78201 -32.01714 -30.75035 -30.14503 -28.86743 -25.95838 -25.01309 -23.85693 -23.40618 -21.69155 -20.87817 -19.99399 -18.96353 -18.69031 -17.53083 -17.36665 -17.13266 -16.92121 -16.60978 -16.33334 -15.77457 -15.71895 -15.39829 -14.93059 -14.61142 -14.48852 -14.26764 -14.01221 -13.90519 -13.85633 -13.65266 -13.50781 -13.30560 -13.12484 -13.06841 -13.01887 -12.91447 -12.78278 -12.62066 -12.40126 -12.19875 -12.10585 -12.02822 -11.96703 -11.62705 -11.52503 -11.08511 -10.59567 -10.50247 -10.07182 -9.94774 -9.60912 -8.19009 -6.33237 -0.82250 -0.15719 0.37869 1.44032 1.44791 1.54258 1.87761 1.94565 2.30684 2.43301 2.79318 3.09255 3.12866 3.21923 3.50082 3.74586 3.98141 4.03554 4.14630 4.17013 4.23897 4.32591 4.39896 4.44205 4.51452 4.56182 4.70122 4.78072 4.83227 4.88515 4.98780 5.02340 5.04071 5.11424 5.16578 5.22309 5.27765 5.40172 5.53147 5.54657 5.62212 5.74642 5.89701 5.93576 6.08821 6.76799 7.01707 7.34127 7.62321 8.89158 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023900 B = 0.002448 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.255576 B =11436.291217 C =11680.578435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.113 4.113 3 C 0.279 3.721 4 H -0.001 1.001 5 C -0.546 4.546 6 H 0.074 0.926 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.967 3.033 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.262 1.262 13 N -0.702 5.702 14 C 0.500 3.500 15 O -0.582 6.582 16 C -0.074 4.074 17 H 0.134 0.866 18 C -0.135 4.135 19 C -0.018 4.018 20 C -0.124 4.124 21 C -0.041 4.041 22 C -0.666 4.666 23 S 2.504 3.496 24 C -0.618 4.618 25 O -0.985 6.985 26 O -0.977 6.977 27 C -0.034 4.034 28 C -0.137 4.137 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.021 0.979 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.264 0.736 35 H 0.404 0.596 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.145 0.855 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.158 0.842 44 H 0.163 0.837 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.947 12.794 19.512 26.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.152 4.152 3 C 0.175 3.825 4 H 0.017 0.983 5 C -0.584 4.584 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.557 5.557 9 Si 0.792 3.208 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.186 1.186 13 N -0.351 5.351 14 C 0.287 3.713 15 O -0.462 6.462 16 C -0.095 4.095 17 H 0.151 0.849 18 C -0.193 4.193 19 C -0.019 4.019 20 C -0.143 4.143 21 C -0.060 4.060 22 C -0.752 4.752 23 S 2.688 3.312 24 C -0.772 4.772 25 O -0.982 6.982 26 O -0.974 6.974 27 C -0.053 4.053 28 C -0.156 4.156 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.239 0.761 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.113 0.887 39 H 0.132 0.868 40 H 0.162 0.838 41 H 0.170 0.830 42 H 0.173 0.827 43 H 0.177 0.823 44 H 0.180 0.820 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.108 12.329 18.124 25.541 hybrid contribution 1.998 -0.269 -0.453 2.067 sum -11.109 12.060 17.671 24.106 Atomic orbital electron populations 1.21669 0.96955 0.99106 1.00299 1.21708 0.93757 0.99328 1.00424 1.18315 0.93689 0.88916 0.81575 0.98300 1.21556 0.91407 1.42990 1.02413 0.90771 1.25788 1.03133 0.94827 0.94779 1.70132 1.37440 1.44185 1.03935 0.85436 0.79335 0.79051 0.76996 1.19613 1.21654 1.18624 1.46197 1.15421 1.56071 1.17420 1.20990 0.81798 0.78566 0.89968 1.90710 1.51948 1.60751 1.42829 1.20514 0.93137 0.99824 0.96012 0.84870 1.21793 0.98225 0.96119 1.03137 1.19876 0.94790 0.93300 0.93900 1.21123 0.97292 0.97878 0.97968 1.21019 0.91887 0.97490 0.95598 1.30634 1.23253 1.13732 1.07582 1.04904 0.73046 0.77626 0.75661 1.29991 1.14034 1.16872 1.16323 1.93533 1.85792 1.84526 1.34364 1.93527 1.65842 1.56513 1.81504 1.21193 0.97258 0.91981 0.94822 1.21477 0.92494 1.01055 1.00551 0.93385 0.93648 0.96011 0.93248 0.92997 0.92745 0.76095 0.90417 0.93201 0.88691 0.86814 0.83751 0.82961 0.82689 0.82331 0.81964 0.82431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.52 71.98 0.61 -4.94 16 2 C -0.11 -5.46 5.49 30.60 0.17 -5.30 16 3 C 0.28 13.95 2.11 44.25 0.09 14.04 16 4 H 0.00 -0.06 7.55 -2.39 -0.02 -0.08 16 5 C -0.55 -28.16 8.67 25.60 0.22 -27.94 16 6 H 0.07 3.53 7.73 -2.91 -0.02 3.51 16 7 C 0.01 0.80 5.19 84.65 0.44 1.24 16 8 N -0.92 -53.27 12.00 21.45 0.26 -53.01 16 9 Si 0.97 41.62 29.54 68.60 2.03 43.65 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 13 N -0.70 -27.12 4.92 -446.10 -2.19 -29.31 16 14 C 0.50 18.38 5.61 87.66 0.49 18.87 16 15 O -0.58 -26.92 12.27 -3.05 -0.04 -26.95 16 16 C -0.07 -1.80 2.90 -12.28 -0.04 -1.84 16 17 H 0.13 2.43 7.88 -2.39 -0.02 2.41 16 18 C -0.14 -2.62 8.90 71.98 0.64 -1.98 16 19 C -0.02 -0.47 4.39 -19.87 -0.09 -0.55 16 20 C -0.12 -3.52 7.94 22.27 0.18 -3.34 16 21 C -0.04 -1.04 9.47 22.27 0.21 -0.83 16 22 C -0.67 -14.36 5.66 22.27 0.13 -14.23 16 23 S 2.50 43.74 5.80 -56.49 -0.33 43.42 16 24 C -0.62 -2.82 10.80 113.37 1.22 -1.60 16 25 O -0.98 -25.77 17.13 -127.65 -2.19 -27.95 16 26 O -0.98 -23.19 17.13 -127.65 -2.19 -25.38 16 27 C -0.03 -0.68 9.47 22.27 0.21 -0.47 16 28 C -0.14 -2.89 9.67 22.27 0.22 -2.68 16 29 H 0.05 2.07 5.64 -2.39 -0.01 2.05 16 30 H 0.04 1.80 8.14 -2.38 -0.02 1.79 16 31 H 0.02 1.07 7.87 -2.39 -0.02 1.05 16 32 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.05 2.82 6.64 -2.39 -0.02 2.81 16 34 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 35 H 0.40 12.81 7.95 -92.71 -0.74 12.08 16 36 H 0.08 1.40 7.56 -2.39 -0.02 1.38 16 37 H 0.05 1.12 7.37 -2.39 -0.02 1.10 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.11 3.50 7.51 -2.91 -0.02 3.48 16 40 H 0.14 3.27 7.57 -2.91 -0.02 3.25 16 41 H 0.15 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.15 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.16 0.04 8.14 -2.39 -0.02 0.02 16 44 H 0.16 2.39 7.57 -2.91 -0.02 2.37 16 45 H 0.16 2.33 7.95 -2.91 -0.02 2.31 16 Total: -1.00 -82.76 378.85 0.33 -82.43 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.26 Total: 24.66 kcal Atomic # 6 Polarization: -36.26 SS G_CDS: 4.71 Total: -31.55 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -1.94 Total: -82.32 kcal Atomic # 8 Polarization: -75.87 SS G_CDS: -4.41 Total: -80.28 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: 43.74 SS G_CDS: -0.33 Total: 43.42 kcal Total: -82.76 0.33 -82.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.490 kcal (2) G-P(sol) polarization free energy of solvation -82.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds