Wall clock time and date at job start Tue Mar 31 2020 22:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47430 * 2 1 4 4 H 1.08998 * 109.67346 * 64.23106 * 3 2 1 5 5 C 1.53297 * 109.68326 * 303.71429 * 3 2 1 6 6 O 1.42961 * 109.22228 * 187.97239 * 5 3 2 7 7 C 1.42966 * 114.16750 * 62.57967 * 6 5 3 8 8 H 1.09000 * 109.50688 * 57.39132 * 7 6 5 9 9 C 1.52999 * 109.51212 * 177.49371 * 7 6 5 10 10 C 1.53298 * 109.22213 * 297.42233 * 7 6 5 11 11 N 1.47146 * 108.38415 * 52.29850 * 10 7 6 12 12 S 1.65607 * 120.97992 * 129.44679 * 11 10 7 13 13 O 1.42103 * 106.39921 * 14.09714 * 12 11 10 14 14 O 1.42101 * 106.40260 * 147.01453 * 12 11 10 15 15 C 1.76199 * 107.21633 * 260.55566 * 12 11 10 16 16 C 1.38657 * 119.87412 * 262.17343 * 15 12 11 17 17 C 1.38617 * 120.49634 * 179.72084 * 16 15 12 18 18 C 1.37641 * 120.25159 * 0.55565 * 17 16 15 19 19 C 1.40708 * 119.73956 * 359.71947 * 18 17 16 20 20 C 1.41394 * 120.23830 * 179.97438 * 19 18 17 21 21 H 1.07994 * 119.99819 * 212.41807 * 20 19 18 22 22 C 1.39946 * 120.00394 * 32.42326 * 20 19 18 23 23 N 1.30833 * 119.99705 * 7.01082 * 22 20 19 24 24 Si 1.86799 * 120.00371 * 187.00594 * 22 20 19 25 25 H 1.48502 * 109.46992 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46949 * 119.99967 * 24 22 20 27 27 H 1.48491 * 109.47402 * 240.00329 * 24 22 20 28 28 C 1.37600 * 119.87505 * 82.44518 * 15 12 11 29 29 H 1.09003 * 109.47653 * 65.40004 * 1 2 3 30 30 H 1.08998 * 109.47861 * 185.40433 * 1 2 3 31 31 H 1.09002 * 109.46596 * 305.40589 * 1 2 3 32 32 H 1.09005 * 109.46400 * 240.00442 * 2 1 3 33 33 H 1.08995 * 109.47173 * 120.00917 * 2 1 3 34 34 H 1.09002 * 109.50941 * 68.05014 * 5 3 2 35 35 H 1.09000 * 109.51194 * 307.89637 * 5 3 2 36 36 H 1.09000 * 109.46849 * 60.00639 * 9 7 6 37 37 H 1.09001 * 109.46616 * 179.97438 * 9 7 6 38 38 H 1.08990 * 109.47279 * 299.99999 * 9 7 6 39 39 H 1.08998 * 109.68220 * 172.02619 * 10 7 6 40 40 H 1.09001 * 109.67917 * 292.57579 * 10 7 6 41 41 H 1.07994 * 119.75271 * 359.97423 * 16 15 12 42 42 H 1.08000 * 119.87580 * 180.27438 * 17 16 15 43 43 H 1.07998 * 120.13372 * 179.70568 * 18 17 16 44 44 H 0.96999 * 119.99241 * 180.02562 * 23 22 20 45 45 H 1.08000 * 120.12313 * 359.97438 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.7417 1.9372 0.9243 5 6 1.4569 2.1964 -1.2006 6 8 2.0799 3.4793 -1.2987 7 6 3.4888 3.4292 -1.5363 8 1 3.6840 2.8677 -2.4500 9 6 4.0330 4.8514 -1.6843 10 6 4.1760 2.7384 -0.3529 11 7 3.5070 1.4494 -0.1156 12 16 4.3792 0.0479 0.0169 13 8 5.7355 0.4344 0.1916 14 8 3.6800 -0.7739 0.9416 15 6 4.2916 -0.7702 -1.5412 16 6 3.3706 -1.7882 -1.7359 17 6 3.2866 -2.4366 -2.9582 18 6 4.1266 -2.0832 -3.9897 19 6 5.0690 -1.0554 -3.8016 20 6 5.9374 -0.6843 -4.8539 21 1 6.9343 -0.3328 -4.6327 22 6 5.5051 -0.7722 -6.1820 23 7 4.2576 -1.0653 -6.4457 24 14 6.7091 -0.4711 -7.5781 25 1 8.0488 -0.1600 -7.0180 26 1 6.7979 -1.6870 -8.4260 27 1 6.2381 0.6723 -8.4000 28 6 5.1413 -0.4002 -2.5583 29 1 -0.3634 0.4278 -0.9344 30 1 -0.3635 -1.0230 0.0968 31 1 -0.3632 0.5954 0.8377 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 0.3828 2.3227 -1.0644 35 1 1.6449 1.6297 -2.1126 36 1 3.8390 5.4116 -0.7696 37 1 5.1072 4.8124 -1.8650 38 1 3.5407 5.3434 -2.5230 39 1 5.2271 2.5689 -0.5866 40 1 4.0933 3.3640 0.5358 41 1 2.7108 -2.0753 -0.9305 42 1 2.5625 -3.2251 -3.1002 43 1 4.0628 -2.5929 -4.9397 44 1 3.9582 -1.1266 -7.3663 45 1 5.8607 0.3903 -2.4031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619475822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:55 Heat of formation + Delta-G solvation = -94.867260 kcal Electronic energy + Delta-G solvation = -29373.445265 eV Core-core repulsion = 25482.881846 eV Total energy + Delta-G solvation = -3890.563419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.53566 -37.77064 -37.13491 -35.56505 -35.25935 -33.88436 -33.70380 -31.39628 -30.12626 -29.88856 -27.46382 -26.02208 -25.54915 -23.88131 -21.98069 -21.52694 -21.02517 -20.76447 -18.65839 -17.99195 -16.83357 -16.64015 -16.10132 -15.92837 -15.23081 -15.14859 -14.87214 -14.72481 -14.57917 -14.44304 -13.54511 -13.47559 -13.40665 -12.94999 -12.63382 -12.50389 -12.41523 -12.30880 -12.06023 -11.76747 -11.70640 -11.62031 -11.49011 -11.38801 -11.30271 -11.19931 -11.07257 -11.03517 -11.02510 -10.62367 -10.36334 -10.18214 -9.86312 -9.76945 -9.51210 -9.40936 -8.61570 -8.08735 -7.66069 -6.88729 -4.60745 0.89200 2.10556 2.56153 2.99341 2.99966 3.04712 3.31527 3.80117 3.82419 4.16956 4.40066 4.64566 4.70373 4.86823 5.04854 5.12474 5.16569 5.29293 5.31430 5.44039 5.45677 5.49714 5.65991 5.67380 5.73305 5.77649 5.88376 5.95431 6.00002 6.07276 6.14614 6.15826 6.26114 6.33733 6.54349 6.58561 6.66149 6.70692 6.86308 7.02993 7.15467 7.26435 7.28702 7.63923 7.77912 7.88511 8.35855 8.63395 8.68249 10.07078 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011576 B = 0.004790 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.234835 B = 5843.879153 C = 6544.092381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.204 4.204 3 C 0.133 3.867 4 H 0.081 0.919 5 C 0.051 3.949 6 O -0.378 6.378 7 C 0.070 3.930 8 H 0.071 0.929 9 C -0.143 4.143 10 C 0.094 3.906 11 N -1.000 6.000 12 S 2.687 3.313 13 O -0.971 6.971 14 O -0.968 6.968 15 C -0.638 4.638 16 C -0.143 4.143 17 C -0.124 4.124 18 C -0.105 4.105 19 C 0.092 3.908 20 C -0.464 4.464 21 H 0.081 0.919 22 C 0.072 3.928 23 N -0.808 5.808 24 Si 0.914 3.086 25 H -0.260 1.260 26 H -0.272 1.272 27 H -0.273 1.273 28 C -0.115 4.115 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.115 0.885 42 H 0.100 0.900 43 H 0.126 0.874 44 H 0.281 0.719 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.388 6.406 6.746 10.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.242 4.242 3 C 0.027 3.973 4 H 0.099 0.901 5 C -0.027 4.027 6 O -0.297 6.297 7 C 0.011 3.989 8 H 0.089 0.911 9 C -0.200 4.200 10 C -0.032 4.032 11 N -0.837 5.837 12 S 2.786 3.214 13 O -0.962 6.962 14 O -0.959 6.959 15 C -0.730 4.730 16 C -0.164 4.164 17 C -0.144 4.144 18 C -0.125 4.125 19 C 0.089 3.911 20 C -0.494 4.494 21 H 0.100 0.900 22 C -0.144 4.144 23 N -0.434 5.434 24 Si 0.739 3.261 25 H -0.183 1.183 26 H -0.197 1.197 27 H -0.199 1.199 28 C -0.136 4.136 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.145 0.855 34 H 0.120 0.880 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.132 0.868 42 H 0.118 0.882 43 H 0.144 0.856 44 H 0.092 0.908 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.173 6.299 7.360 10.982 hybrid contribution 0.297 -0.219 -1.632 1.673 sum -4.877 6.080 5.728 9.673 Atomic orbital electron populations 1.21657 0.94556 1.02176 1.01513 1.23114 0.98056 0.95144 1.07915 1.21615 0.78649 0.97756 0.99287 0.90130 1.23087 0.97334 0.84686 0.97567 1.87889 1.20664 1.28153 1.93015 1.22503 0.81648 0.97516 0.97240 0.91058 1.21728 1.01055 0.94404 1.02851 1.22134 0.97693 0.84365 0.98997 1.57964 1.15520 1.21541 1.88721 1.01820 0.72258 0.72167 0.75178 1.93505 1.33570 1.82592 1.86503 1.93424 1.73164 1.67440 1.61838 1.29829 1.09295 1.13478 1.20361 1.20217 0.99745 0.98727 0.97718 1.20861 0.99770 0.99913 0.93807 1.21698 0.96659 0.96081 0.98014 1.17702 0.92277 0.89768 0.91380 1.19606 1.00520 1.39210 0.90084 0.90039 1.25886 0.95513 0.92630 1.00354 1.69733 1.15400 1.36371 1.21891 0.86149 0.81133 0.78753 0.80091 1.18348 1.19726 1.19863 1.20813 0.98749 1.00052 0.94033 0.92718 0.92064 0.92681 0.89071 0.85464 0.87992 0.91967 0.91828 0.90638 0.91536 0.87990 0.90629 0.86751 0.88237 0.85644 0.90780 0.87405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.30 37.16 0.35 -1.24 16 2 C -0.20 -2.93 3.79 -26.73 -0.10 -3.03 16 3 C 0.13 1.88 3.23 -67.42 -0.22 1.66 16 4 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 5 C 0.05 0.70 5.57 37.31 0.21 0.91 16 6 O -0.38 -5.50 10.38 -35.23 -0.37 -5.87 16 7 C 0.07 0.98 3.40 -26.58 -0.09 0.89 16 8 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 9 C -0.14 -1.56 9.57 37.16 0.36 -1.21 16 10 C 0.09 1.33 5.91 -3.53 -0.02 1.31 16 11 N -1.00 -15.94 3.34 -106.04 -0.35 -16.29 16 12 S 2.69 50.90 5.15 -107.50 -0.55 50.35 16 13 O -0.97 -20.39 16.02 -57.17 -0.92 -21.31 16 14 O -0.97 -18.81 13.18 -57.17 -0.75 -19.57 16 15 C -0.64 -13.56 5.62 -39.66 -0.22 -13.79 16 16 C -0.14 -2.97 7.56 -39.29 -0.30 -3.27 16 17 C -0.12 -2.68 10.02 -39.66 -0.40 -3.08 16 18 C -0.10 -2.53 8.64 -38.87 -0.34 -2.87 16 19 C 0.09 2.31 5.52 -106.82 -0.59 1.72 16 20 C -0.46 -11.66 9.05 -37.74 -0.34 -12.00 16 21 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 22 C 0.07 1.72 5.30 -17.34 -0.09 1.63 16 23 N -0.81 -19.72 10.90 55.55 0.61 -19.11 16 24 Si 0.91 17.96 29.57 -169.99 -5.03 12.94 16 25 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 26 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 27 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 28 C -0.12 -2.68 9.26 -38.88 -0.36 -3.04 16 29 H 0.05 0.57 6.89 -51.93 -0.36 0.21 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 1.47 3.87 -51.93 -0.20 1.27 16 33 H 0.13 2.00 5.36 -51.95 -0.28 1.72 16 34 H 0.10 1.15 7.00 -51.93 -0.36 0.78 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 1.46 7.00 -51.93 -0.36 1.10 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.11 2.13 6.12 -52.49 -0.32 1.81 16 42 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 43 H 0.13 3.11 6.37 -52.49 -0.33 2.78 16 44 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 45 H 0.11 2.40 7.79 -52.49 -0.41 1.99 16 LS Contribution 359.50 15.07 5.42 5.42 Total: -1.00 -28.70 359.50 -10.51 -39.21 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.40 Total: 9.64 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: -2.16 Total: -35.39 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.25 Total: -35.41 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -2.04 Total: -46.75 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.94 kcal Atomic # 16 Polarization: 50.90 SS G_CDS: -0.55 Total: 50.35 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.70 -10.51 -39.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619475822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.661 kcal (2) G-P(sol) polarization free energy of solvation -28.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds