Wall clock time and date at job start Tue Mar 31 2020 22:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47430 * 2 1 4 4 H 1.08998 * 109.67346 * 64.23106 * 3 2 1 5 5 C 1.53297 * 109.68326 * 303.71429 * 3 2 1 6 6 O 1.42961 * 109.22228 * 187.97239 * 5 3 2 7 7 C 1.42966 * 114.16750 * 62.57967 * 6 5 3 8 8 H 1.09000 * 109.50688 * 57.39132 * 7 6 5 9 9 C 1.52999 * 109.51212 * 177.49371 * 7 6 5 10 10 C 1.53298 * 109.22213 * 297.42233 * 7 6 5 11 11 N 1.47146 * 108.38415 * 52.29850 * 10 7 6 12 12 S 1.65607 * 120.97992 * 129.44679 * 11 10 7 13 13 O 1.42103 * 106.39921 * 14.09714 * 12 11 10 14 14 O 1.42101 * 106.40260 * 147.01453 * 12 11 10 15 15 C 1.76199 * 107.21633 * 260.55566 * 12 11 10 16 16 C 1.38657 * 119.87412 * 262.17343 * 15 12 11 17 17 C 1.38617 * 120.49634 * 179.72084 * 16 15 12 18 18 C 1.37641 * 120.25159 * 0.55565 * 17 16 15 19 19 C 1.40708 * 119.73956 * 359.71947 * 18 17 16 20 20 C 1.41394 * 120.23830 * 179.97438 * 19 18 17 21 21 H 1.07994 * 119.99819 * 212.41807 * 20 19 18 22 22 C 1.39946 * 120.00394 * 32.42326 * 20 19 18 23 23 N 1.30833 * 119.99705 * 7.01082 * 22 20 19 24 24 Si 1.86799 * 120.00371 * 187.00594 * 22 20 19 25 25 H 1.48502 * 109.46992 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46949 * 119.99967 * 24 22 20 27 27 H 1.48491 * 109.47402 * 240.00329 * 24 22 20 28 28 C 1.37600 * 119.87505 * 82.44518 * 15 12 11 29 29 H 1.09003 * 109.47653 * 65.40004 * 1 2 3 30 30 H 1.08998 * 109.47861 * 185.40433 * 1 2 3 31 31 H 1.09002 * 109.46596 * 305.40589 * 1 2 3 32 32 H 1.09005 * 109.46400 * 240.00442 * 2 1 3 33 33 H 1.08995 * 109.47173 * 120.00917 * 2 1 3 34 34 H 1.09002 * 109.50941 * 68.05014 * 5 3 2 35 35 H 1.09000 * 109.51194 * 307.89637 * 5 3 2 36 36 H 1.09000 * 109.46849 * 60.00639 * 9 7 6 37 37 H 1.09001 * 109.46616 * 179.97438 * 9 7 6 38 38 H 1.08990 * 109.47279 * 299.99999 * 9 7 6 39 39 H 1.08998 * 109.68220 * 172.02619 * 10 7 6 40 40 H 1.09001 * 109.67917 * 292.57579 * 10 7 6 41 41 H 1.07994 * 119.75271 * 359.97423 * 16 15 12 42 42 H 1.08000 * 119.87580 * 180.27438 * 17 16 15 43 43 H 1.07998 * 120.13372 * 179.70568 * 18 17 16 44 44 H 0.96999 * 119.99241 * 180.02562 * 23 22 20 45 45 H 1.08000 * 120.12313 * 359.97438 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.7417 1.9372 0.9243 5 6 1.4569 2.1964 -1.2006 6 8 2.0799 3.4793 -1.2987 7 6 3.4888 3.4292 -1.5363 8 1 3.6840 2.8677 -2.4500 9 6 4.0330 4.8514 -1.6843 10 6 4.1760 2.7384 -0.3529 11 7 3.5070 1.4494 -0.1156 12 16 4.3792 0.0479 0.0169 13 8 5.7355 0.4344 0.1916 14 8 3.6800 -0.7739 0.9416 15 6 4.2916 -0.7702 -1.5412 16 6 3.3706 -1.7882 -1.7359 17 6 3.2866 -2.4366 -2.9582 18 6 4.1266 -2.0832 -3.9897 19 6 5.0690 -1.0554 -3.8016 20 6 5.9374 -0.6843 -4.8539 21 1 6.9343 -0.3328 -4.6327 22 6 5.5051 -0.7722 -6.1820 23 7 4.2576 -1.0653 -6.4457 24 14 6.7091 -0.4711 -7.5781 25 1 8.0488 -0.1600 -7.0180 26 1 6.7979 -1.6870 -8.4260 27 1 6.2381 0.6723 -8.4000 28 6 5.1413 -0.4002 -2.5583 29 1 -0.3634 0.4278 -0.9344 30 1 -0.3635 -1.0230 0.0968 31 1 -0.3632 0.5954 0.8377 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 0.3828 2.3227 -1.0644 35 1 1.6449 1.6297 -2.1126 36 1 3.8390 5.4116 -0.7696 37 1 5.1072 4.8124 -1.8650 38 1 3.5407 5.3434 -2.5230 39 1 5.2271 2.5689 -0.5866 40 1 4.0933 3.3640 0.5358 41 1 2.7108 -2.0753 -0.9305 42 1 2.5625 -3.2251 -3.1002 43 1 4.0628 -2.5929 -4.9397 44 1 3.9582 -1.1266 -7.3663 45 1 5.8607 0.3903 -2.4031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619475822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:54 Heat of formation + Delta-G solvation = -112.240943 kcal Electronic energy + Delta-G solvation = -29374.198645 eV Core-core repulsion = 25482.881846 eV Total energy + Delta-G solvation = -3891.316798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.68268 -39.52839 -38.65780 -37.05277 -36.55832 -35.64295 -34.88238 -32.45174 -31.91164 -31.64780 -28.48861 -27.43343 -27.10272 -24.95129 -23.70410 -22.95686 -22.46661 -21.97735 -20.22678 -19.58407 -18.26248 -17.84414 -17.66799 -17.34590 -16.85849 -16.61388 -16.36687 -15.93608 -15.83620 -15.67201 -15.24931 -15.08252 -14.62501 -14.28650 -14.04395 -13.81834 -13.64193 -13.36300 -13.35610 -13.20167 -13.19303 -13.15771 -13.00502 -12.85117 -12.75008 -12.72464 -12.40189 -12.29004 -12.18554 -12.13125 -11.61667 -11.52621 -11.45383 -11.25705 -11.14901 -10.89596 -9.92938 -9.76358 -9.47317 -8.67552 -6.50068 -0.62005 0.35117 0.79783 1.36736 1.41728 1.50762 1.89502 2.17606 2.56220 2.68527 2.73860 3.26905 3.42734 3.53402 3.71119 3.91799 4.04130 4.06423 4.22814 4.24877 4.33572 4.37413 4.42841 4.48416 4.63446 4.67447 4.77286 4.78823 4.82777 4.85671 4.88988 4.99622 5.00784 5.12060 5.19180 5.25823 5.26523 5.33896 5.37360 5.46840 5.50752 5.58042 5.83666 5.93530 6.07237 6.15368 6.50350 6.79381 6.83049 8.30339 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011576 B = 0.004790 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.234835 B = 5843.879153 C = 6544.092381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.206 4.206 3 C 0.129 3.871 4 H 0.105 0.895 5 C 0.052 3.948 6 O -0.382 6.382 7 C 0.068 3.932 8 H 0.043 0.957 9 C -0.138 4.138 10 C 0.087 3.913 11 N -0.997 5.997 12 S 2.709 3.291 13 O -0.993 6.993 14 O -0.970 6.970 15 C -0.646 4.646 16 C -0.135 4.135 17 C -0.126 4.126 18 C -0.125 4.125 19 C 0.063 3.937 20 C -0.500 4.500 21 H 0.076 0.924 22 C 0.035 3.965 23 N -0.835 5.835 24 Si 0.984 3.016 25 H -0.260 1.260 26 H -0.264 1.264 27 H -0.265 1.265 28 C -0.132 4.132 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.132 0.868 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.139 0.861 42 H 0.129 0.871 43 H 0.112 0.888 44 H 0.289 0.711 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.618 7.539 7.737 12.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.244 4.244 3 C 0.024 3.976 4 H 0.123 0.877 5 C -0.026 4.026 6 O -0.300 6.300 7 C 0.009 3.991 8 H 0.061 0.939 9 C -0.196 4.196 10 C -0.038 4.038 11 N -0.836 5.836 12 S 2.804 3.196 13 O -0.983 6.983 14 O -0.961 6.961 15 C -0.734 4.734 16 C -0.156 4.156 17 C -0.145 4.145 18 C -0.145 4.145 19 C 0.060 3.940 20 C -0.530 4.530 21 H 0.094 0.906 22 C -0.178 4.178 23 N -0.462 5.462 24 Si 0.805 3.195 25 H -0.184 1.184 26 H -0.189 1.189 27 H -0.190 1.190 28 C -0.153 4.153 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.150 0.850 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.157 0.843 42 H 0.146 0.854 43 H 0.130 0.870 44 H 0.099 0.901 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.410 7.407 8.337 12.863 hybrid contribution 0.569 -0.557 -1.803 1.971 sum -5.840 6.850 6.534 11.123 Atomic orbital electron populations 1.21667 0.91982 1.03150 1.02831 1.23063 1.00431 0.94818 1.06076 1.21877 0.77172 0.98026 1.00500 0.87678 1.23175 0.98931 0.84193 0.96321 1.87892 1.20825 1.28446 1.92871 1.22553 0.81683 0.98999 0.95863 0.93869 1.21742 1.01587 0.92479 1.03789 1.22378 0.97355 0.83762 1.00319 1.57812 1.16495 1.20969 1.88364 1.01219 0.71857 0.72449 0.74028 1.93472 1.35395 1.83038 1.86444 1.93434 1.73052 1.68279 1.61294 1.30310 1.08283 1.13604 1.21250 1.20573 0.99297 0.97705 0.98001 1.21183 0.99555 1.00367 0.93408 1.21681 0.97844 0.96611 0.98384 1.18035 0.93108 0.90567 0.92324 1.19807 1.00673 1.41152 0.91378 0.90599 1.26670 0.97104 0.91894 1.02163 1.69783 1.16771 1.36839 1.22837 0.85122 0.78637 0.78960 0.76829 1.18379 1.18863 1.19014 1.20863 0.99664 1.00461 0.94358 0.92014 0.91551 0.90570 0.91263 0.86591 0.85028 0.94351 0.90152 0.89568 0.91379 0.88562 0.87864 0.84314 0.85360 0.86965 0.90068 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.30 71.98 0.67 -2.03 16 2 C -0.21 -5.49 3.79 30.59 0.12 -5.38 16 3 C 0.13 3.37 3.23 44.97 0.15 3.51 16 4 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 5 C 0.05 1.33 5.57 72.08 0.40 1.73 16 6 O -0.38 -10.41 10.38 -148.98 -1.55 -11.96 16 7 C 0.07 1.85 3.40 30.69 0.10 1.95 16 8 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 9 C -0.14 -2.80 9.57 71.98 0.69 -2.11 16 10 C 0.09 2.36 5.91 86.36 0.51 2.87 16 11 N -1.00 -30.59 3.34 -489.39 -1.63 -32.22 16 12 S 2.71 101.39 5.15 -56.49 -0.29 101.10 16 13 O -0.99 -41.73 16.02 -128.00 -2.05 -43.78 16 14 O -0.97 -36.48 13.18 -128.00 -1.69 -38.17 16 15 C -0.65 -27.83 5.62 22.22 0.12 -27.71 16 16 C -0.14 -5.59 7.56 22.46 0.17 -5.42 16 17 C -0.13 -5.47 10.02 22.22 0.22 -5.24 16 18 C -0.13 -6.28 8.64 22.73 0.20 -6.09 16 19 C 0.06 3.30 5.52 -21.29 -0.12 3.18 16 20 C -0.50 -26.32 9.05 23.46 0.21 -26.11 16 21 H 0.08 3.90 7.85 -2.91 -0.02 3.88 16 22 C 0.04 1.72 5.30 85.26 0.45 2.17 16 23 N -0.84 -41.97 10.90 21.83 0.24 -41.74 16 24 Si 0.98 37.40 29.57 68.60 2.03 39.42 16 25 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 26 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 27 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 28 C -0.13 -6.43 9.26 22.73 0.21 -6.22 16 29 H 0.06 1.11 6.89 -2.39 -0.02 1.10 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 2.15 3.87 -2.38 -0.01 2.14 16 33 H 0.12 3.40 5.36 -2.65 -0.01 3.38 16 34 H 0.13 2.56 7.00 -2.39 -0.02 2.54 16 35 H 0.04 1.16 8.14 -2.39 -0.02 1.15 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.10 2.73 7.00 -2.39 -0.02 2.71 16 40 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.14 5.00 6.12 -2.91 -0.02 4.98 16 42 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 43 H 0.11 5.83 6.37 -2.91 -0.02 5.81 16 44 H 0.29 13.11 8.30 -92.71 -0.77 12.34 16 45 H 0.11 5.00 7.79 -2.91 -0.02 4.98 16 Total: -1.00 -63.20 359.50 0.16 -63.04 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: 1.00 Total: 35.20 kcal Atomic # 6 Polarization: -75.00 SS G_CDS: 4.11 Total: -70.89 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: -1.40 Total: -73.96 kcal Atomic # 8 Polarization: -88.63 SS G_CDS: -5.28 Total: -93.91 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.42 kcal Atomic # 16 Polarization: 101.39 SS G_CDS: -0.29 Total: 101.10 kcal Total: -63.20 0.16 -63.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619475822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.204 kcal (2) G-P(sol) polarization free energy of solvation -63.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds