Wall clock time and date at job start Tue Mar 31 2020 22:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47006 * 2 1 4 4 H 1.08997 * 109.71275 * 55.54066 * 3 2 1 5 5 C 1.53300 * 109.68175 * 176.07640 * 3 2 1 6 6 O 1.42965 * 109.22541 * 67.41552 * 5 3 2 7 7 C 1.42960 * 114.16316 * 62.58077 * 6 5 3 8 8 H 1.09004 * 109.51238 * 57.39844 * 7 6 5 9 9 C 1.53001 * 109.50936 * 177.49351 * 7 6 5 10 10 C 1.53710 * 109.14933 * 297.29086 * 7 6 5 11 11 N 1.47146 * 108.16371 * 52.53851 * 10 7 6 12 12 S 1.65604 * 120.98427 * 129.43414 * 11 10 7 13 13 O 1.42098 * 106.40332 * 156.17960 * 12 11 10 14 14 O 1.42102 * 106.39829 * 23.25357 * 12 11 10 15 15 C 1.76205 * 107.21604 * 269.72058 * 12 11 10 16 16 C 1.38660 * 119.87428 * 270.22919 * 15 12 11 17 17 C 1.38610 * 120.50142 * 180.23712 * 16 15 12 18 18 C 1.37636 * 120.25119 * 359.78677 * 17 16 15 19 19 C 1.40703 * 119.74091 * 359.97438 * 18 17 16 20 20 C 1.41389 * 120.24121 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99750 * 155.31192 * 20 19 18 22 22 C 1.39944 * 120.00512 * 335.31678 * 20 19 18 23 23 N 1.30824 * 119.99761 * 342.22863 * 22 20 19 24 24 Si 1.86796 * 120.00509 * 162.23441 * 22 20 19 25 25 H 1.48496 * 109.47224 * 94.66092 * 24 22 20 26 26 H 1.48501 * 109.47310 * 214.66307 * 24 22 20 27 27 H 1.48502 * 109.46796 * 334.66372 * 24 22 20 28 28 C 1.37589 * 119.88023 * 89.99516 * 15 12 11 29 29 H 1.08999 * 109.47103 * 299.99801 * 1 2 3 30 30 H 1.08991 * 109.47087 * 60.00335 * 1 2 3 31 31 H 1.09001 * 109.46961 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46965 * 239.99661 * 2 1 3 33 33 H 1.09003 * 109.47253 * 120.00024 * 2 1 3 34 34 H 1.08997 * 109.51459 * 187.34619 * 5 3 2 35 35 H 1.09003 * 109.50686 * 307.49484 * 5 3 2 36 36 H 1.08999 * 109.47057 * 60.00916 * 9 7 6 37 37 H 1.09002 * 109.47122 * 180.02562 * 9 7 6 38 38 H 1.08999 * 109.47673 * 300.00431 * 9 7 6 39 39 H 1.08999 * 109.83897 * 292.85430 * 10 7 6 40 40 H 1.09004 * 109.74529 * 172.16532 * 10 7 6 41 41 H 1.08005 * 119.74838 * 0.02562 * 16 15 12 42 42 H 1.08005 * 119.87261 * 179.76855 * 17 16 15 43 43 H 1.07997 * 120.12912 * 180.02562 * 18 17 16 44 44 H 0.97000 * 120.00211 * 179.97438 * 23 22 20 45 45 H 1.08006 * 120.12496 * 0.02562 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6151 1.9826 0.8460 5 6 3.5698 1.4493 0.0988 6 8 4.1215 0.9046 -1.1024 7 6 3.8189 1.6577 -2.2793 8 1 4.1725 2.6815 -2.1574 9 6 4.5092 1.0190 -3.4862 10 6 2.2978 1.6578 -2.5007 11 7 1.6531 2.1049 -1.2558 12 16 0.5206 3.3130 -1.2685 13 8 -0.2769 3.1277 -0.1071 14 8 -0.0170 3.3451 -2.5835 15 6 1.3794 4.8353 -1.0448 16 6 1.5952 5.3250 0.2343 17 6 2.2649 6.5235 0.4251 18 6 2.7273 7.2391 -0.6559 19 6 2.5184 6.7493 -1.9582 20 6 2.9885 7.4760 -3.0763 21 1 3.1968 6.9642 -4.0042 22 6 3.1839 8.8585 -2.9805 23 7 2.6220 9.5328 -2.0105 24 14 4.2467 9.7409 -4.2378 25 1 3.3859 10.2877 -5.3172 26 1 4.9768 10.8520 -3.5763 27 1 5.2225 8.7845 -4.8196 28 6 1.8375 5.5311 -2.1398 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.9216 2.4725 0.2298 35 1 3.8822 0.8442 0.9499 36 1 4.1538 -0.0041 -3.6087 37 1 4.2785 1.5939 -4.3830 38 1 5.5875 1.0125 -3.3267 39 1 1.9600 0.6514 -2.7482 40 1 2.0437 2.3406 -3.3114 41 1 1.2358 4.7700 1.0884 42 1 2.4242 6.8973 1.4258 43 1 3.2493 8.1724 -0.5049 44 1 2.7577 10.4910 -1.9438 45 1 1.6712 5.1462 -3.1352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619475823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:58 Heat of formation + Delta-G solvation = -126.105610 kcal Electronic energy + Delta-G solvation = -29028.526552 eV Core-core repulsion = 25136.608537 eV Total energy + Delta-G solvation = -3891.918015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.68294 -39.48196 -38.41640 -36.99858 -36.50281 -35.69905 -34.51929 -32.36199 -31.95273 -31.61553 -29.19158 -27.38305 -26.90366 -24.60882 -23.69669 -23.11910 -22.81343 -21.25383 -20.09428 -19.53331 -18.79151 -17.80268 -17.66889 -17.04819 -16.88765 -16.59968 -16.36296 -15.93383 -15.69184 -15.41573 -15.23317 -15.01641 -14.74876 -14.34980 -13.98395 -13.77708 -13.47421 -13.32145 -13.27660 -13.17625 -13.13214 -13.09579 -12.97150 -12.89730 -12.88708 -12.62475 -12.61933 -12.38993 -12.21847 -11.87972 -11.76965 -11.62670 -11.53479 -11.29974 -11.15818 -10.99951 -9.90400 -9.73489 -9.59711 -8.75806 -6.48108 -0.62694 0.36228 0.80783 1.36261 1.43037 1.51662 1.94572 2.16168 2.53021 2.71163 2.80444 3.25704 3.45774 3.63580 3.74371 3.98577 4.02615 4.11024 4.24789 4.27375 4.30445 4.39252 4.47178 4.56633 4.62704 4.72433 4.74383 4.79737 4.86375 4.87705 4.96545 4.99947 5.01908 5.10999 5.13345 5.16807 5.25385 5.35767 5.37160 5.47507 5.51782 5.59703 5.84774 5.90075 6.06810 6.21641 6.49082 6.76843 6.81190 8.22566 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014712 B = 0.004116 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.704237 B = 6800.803931 C = 7583.981358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C 0.110 3.890 4 H 0.104 0.896 5 C 0.054 3.946 6 O -0.375 6.375 7 C 0.073 3.927 8 H 0.049 0.951 9 C -0.139 4.139 10 C 0.090 3.910 11 N -0.989 5.989 12 S 2.705 3.295 13 O -0.975 6.975 14 O -0.993 6.993 15 C -0.641 4.641 16 C -0.149 4.149 17 C -0.121 4.121 18 C -0.140 4.140 19 C 0.065 3.935 20 C -0.497 4.497 21 H 0.081 0.919 22 C 0.037 3.963 23 N -0.824 5.824 24 Si 0.984 3.016 25 H -0.264 1.264 26 H -0.264 1.264 27 H -0.255 1.255 28 C -0.147 4.147 29 H 0.055 0.945 30 H 0.024 0.976 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.047 0.953 35 H 0.135 0.865 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.113 0.887 44 H 0.292 0.708 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.454 -15.269 2.593 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C 0.004 3.996 4 H 0.121 0.879 5 C -0.024 4.024 6 O -0.294 6.294 7 C 0.014 3.986 8 H 0.067 0.933 9 C -0.197 4.197 10 C -0.035 4.035 11 N -0.829 5.829 12 S 2.801 3.199 13 O -0.965 6.965 14 O -0.984 6.984 15 C -0.729 4.729 16 C -0.169 4.169 17 C -0.140 4.140 18 C -0.160 4.160 19 C 0.062 3.938 20 C -0.526 4.526 21 H 0.100 0.900 22 C -0.179 4.179 23 N -0.450 5.450 24 Si 0.804 3.196 25 H -0.189 1.189 26 H -0.188 1.188 27 H -0.179 1.179 28 C -0.168 4.168 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.066 0.934 35 H 0.153 0.847 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.131 0.869 44 H 0.103 0.897 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.591 -15.306 2.569 15.930 hybrid contribution 0.417 1.850 -0.414 1.941 sum 4.008 -13.455 2.155 14.204 Atomic orbital electron populations 1.21818 0.96405 1.02111 1.01008 1.21744 0.95356 0.94226 1.04316 1.22035 0.96871 0.95602 0.85051 0.87855 1.23088 0.90816 1.00007 0.88489 1.87896 1.74585 1.51930 1.14995 1.22568 0.93112 0.95552 0.87408 0.93310 1.21737 1.01079 1.02047 0.94824 1.22378 0.93555 1.02493 0.85037 1.57747 1.60334 1.50417 1.14366 1.01263 0.73490 0.72851 0.72322 1.93485 1.66299 1.86041 1.50712 1.93482 1.77177 1.87420 1.40302 1.30346 1.19747 1.22563 1.00289 1.20432 1.03951 0.98357 0.94191 1.21144 0.99144 0.95210 0.98546 1.21646 1.01680 1.00265 0.92429 1.18028 0.89987 0.91802 0.94008 1.19874 1.40577 0.93416 0.98685 0.90040 1.26785 0.94540 0.98171 0.98387 1.69823 1.33669 1.10156 1.31313 0.85164 0.78571 0.77977 0.77914 1.18875 1.18781 1.17879 1.20779 1.01481 0.98654 0.95852 0.92543 0.95707 0.90735 0.90679 0.88046 0.93435 0.84750 0.90452 0.89981 0.91159 0.88368 0.89324 0.85155 0.85467 0.86876 0.89701 0.87479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 9.41 71.98 0.68 -2.79 16 2 C -0.12 -2.26 5.34 30.59 0.16 -2.09 16 3 C 0.11 2.59 2.55 44.97 0.11 2.71 16 4 H 0.10 2.48 7.25 -2.39 -0.02 2.46 16 5 C 0.05 1.15 6.36 72.08 0.46 1.61 16 6 O -0.38 -8.77 10.10 -148.98 -1.50 -10.28 16 7 C 0.07 1.76 3.41 30.83 0.11 1.87 16 8 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 9 C -0.14 -2.57 9.57 71.98 0.69 -1.88 16 10 C 0.09 2.34 5.48 86.50 0.47 2.82 16 11 N -0.99 -28.91 2.50 -488.63 -1.22 -30.13 16 12 S 2.71 102.96 5.52 -56.49 -0.31 102.65 16 13 O -0.98 -38.32 15.68 -128.00 -2.01 -40.33 16 14 O -0.99 -42.89 16.06 -128.00 -2.06 -44.94 16 15 C -0.64 -28.24 5.96 22.22 0.13 -28.11 16 16 C -0.15 -6.31 9.53 22.46 0.21 -6.10 16 17 C -0.12 -5.38 10.02 22.22 0.22 -5.15 16 18 C -0.14 -7.11 8.70 22.73 0.20 -6.91 16 19 C 0.06 3.44 5.57 -21.29 -0.12 3.33 16 20 C -0.50 -26.08 9.05 23.46 0.21 -25.86 16 21 H 0.08 4.10 7.91 -2.91 -0.02 4.08 16 22 C 0.04 1.79 5.14 85.26 0.44 2.23 16 23 N -0.82 -41.74 10.97 21.83 0.24 -41.50 16 24 Si 0.98 36.74 29.59 68.60 2.03 38.77 16 25 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 26 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 27 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 28 C -0.15 -7.23 9.26 22.73 0.21 -7.02 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.02 0.64 7.58 -2.39 -0.02 0.62 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.42 7.12 -2.39 -0.02 1.41 16 33 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.10 2.13 7.52 -2.39 -0.02 2.12 16 40 H 0.09 2.48 7.24 -2.39 -0.02 2.46 16 41 H 0.13 4.79 7.61 -2.91 -0.02 4.77 16 42 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 43 H 0.11 5.88 6.18 -2.91 -0.02 5.86 16 44 H 0.29 13.27 8.30 -92.71 -0.77 12.51 16 45 H 0.11 5.15 7.60 -2.91 -0.02 5.12 16 Total: -1.00 -65.12 372.71 0.34 -64.78 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: 0.98 Total: 32.33 kcal Atomic # 6 Polarization: -75.55 SS G_CDS: 4.19 Total: -71.36 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -0.98 Total: -71.63 kcal Atomic # 8 Polarization: -89.98 SS G_CDS: -5.57 Total: -95.55 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.77 kcal Atomic # 16 Polarization: 102.96 SS G_CDS: -0.31 Total: 102.65 kcal Total: -65.12 0.34 -64.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619475823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.327 kcal (2) G-P(sol) polarization free energy of solvation -65.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds